mRNA_L-elsbetiae_contig5756.14161.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 264 bits (674), Expect = 2.050e-82 Identity = 136/211 (64.45%), Postives = 155/211 (73.46%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHK 650 GDL R N R +A ACI+RY ELF R PF LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGEDPGQG+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GAE MASWHK Sbjct: 87 GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHK 297
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE) HSP 1 Score: 262 bits (669), Expect = 3.950e-80 Identity = 136/211 (64.45%), Postives = 153/211 (72.51%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHK 650 GDL R N R +A ACIRRY ELF R PF LK RLL +EA+ ALLYGCM W+PR DHY+LL + HH+LL RV YRRK GT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGEDPGQG+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GAE ASWHK Sbjct: 209 GDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFTASWHK 419
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 265 bits (677), Expect = 1.350e-79 Identity = 139/213 (65.26%), Postives = 155/213 (72.77%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHKKE 656 GDL R N R +A ACIRRY ELF R PF LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGE+PG+G PEQNW +CLKDDL+ FE I DW AAK E G WH GVL+GAE MASWHK E Sbjct: 370 GDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGE 582
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE) HSP 1 Score: 265 bits (677), Expect = 1.360e-78 Identity = 137/213 (64.32%), Postives = 156/213 (73.24%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHKKE 656 GDL R N R +A ACIRRY ELF R PF LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGEDPGQG+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GA+ MASWHK E Sbjct: 482 GDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGADRFMASWHKGE 694
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.050e-76 Identity = 135/211 (63.98%), Postives = 154/211 (72.99%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHK 650 GDL R N R +A ACI+RY ELF R PF LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGE PGQG+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GAE MASWHK Sbjct: 538 GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHK 748
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE) HSP 1 Score: 262 bits (669), Expect = 1.710e-75 Identity = 135/211 (63.98%), Postives = 155/211 (73.46%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHK 650 GDL R N R +A AC +RY ELF R PF+LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGEDPGQG+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GAE MASWHK Sbjct: 811 GDLTREINHRSKAAWACNKRYTTELFDRPGAPFSLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHK 1021
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.740e-75 Identity = 136/211 (64.45%), Postives = 155/211 (73.46%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHK 650 GDL R N R +A ACI+RY ELF R PF LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGEDPGQG+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GAE MASWHK Sbjct: 1154 GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHK 1364
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 262 bits (670), Expect = 1.930e-75 Identity = 135/211 (63.98%), Postives = 155/211 (73.46%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHK 650 GDL R N R +A ACI+RY ELF R PF LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGEDPG+G+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GAE MASWHK Sbjct: 867 GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHK 1077
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 264 bits (674), Expect = 2.040e-75 Identity = 136/211 (64.45%), Postives = 155/211 (73.46%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHK 650 GDL R N R +A ACI+RY ELF R PF LK RLL +EA+EALLYGCM W+PR +HY +L + HH+LL RV YRRKRGT+RQLSYAQALKRVG QSVE TVRQRRLLFA A+ARQP+GR PKRLMFGELVGGEDPGQG+PEQNW CLKDD++ FE + + W+ AAK E G WH GVL+GAE MASWHK Sbjct: 1358 GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHK 1568
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE) HSP 1 Score: 256 bits (655), Expect = 3.340e-74 Identity = 131/213 (61.50%), Postives = 152/213 (71.36%), Query Frame = 3 Query: 60 GDLKRGTNFRGRAGSACIRRYYPELFSRLVGPFALKIRLLGSEAMEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQALKRVGSQSVEVTVRQRRLLFAEALARQPNGRPPKRLMFGELVGGEDPGQGHPEQNWEMCLKDDLEAFE--------------ILSVDWARAAKAEEGSTWHEGVLRGAETLMASWHKKE 656 GDL R N+R +A AC+RRY ELF R PF LK RLL +EAMEALLYGCM WAPR D Y+ L +IHH+LL RV Y+R + T+RQLSYAQ LKRVG QSVE T+RQRRLLFA ALARQP+GR PKRLM GELVGGE G+G PEQNW+MCLKDDL+ FE +L W AK + G +WH GVL+GA+ +ASWHKKE Sbjct: 654 GDLTREINYRNKAAWACVRRYGQELFDRPRAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFEAEHGSTDAEPCFFGVLETTWVEKAKVDRGVSWHTGVLQGAQRCLASWHKKE 866 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5756.14161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5756.14161.1 >prot_L-elsbetiae_contig5756.14161.1 ID=prot_L-elsbetiae_contig5756.14161.1|Name=mRNA_L-elsbetiae_contig5756.14161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp MEALLYGCMAWAPRCDHYKLLASIHHQLLRRVNRYRRKRGTFRQLSYAQAback to top mRNA from alignment at L-elsbetiae_contig5756:2770..3881+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5756.14161.1 ID=mRNA_L-elsbetiae_contig5756.14161.1|Name=mRNA_L-elsbetiae_contig5756.14161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1112bp|location=Sequence derived from alignment at L-elsbetiae_contig5756:2770..3881+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5756:2770..3881+ >mRNA_L-elsbetiae_contig5756.14161.1 ID=mRNA_L-elsbetiae_contig5756.14161.1|Name=mRNA_L-elsbetiae_contig5756.14161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig5756:2770..3881+ (Laminarionema elsbetiae ELsaHSoW15)back to top |