mRNA_L-elsbetiae_contig5752.14155.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5752.14155.1
Unique NamemRNA_L-elsbetiae_contig5752.14155.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5752.14155.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.800e-19
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:   86 VVIIEAEDLEVSGAWSVISDTRASGNEYIAWEGLGFQEQNDDYREGDVITTIIHIPTAGTYSFQWLM 286
            VVIIEAEDL V+G W ++ D  ASG  YI WEGL   + N D  +GD+I+T + IPTAGTYSF+W M
Sbjct:  733 VVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNSDPADGDIISTSVQIPTAGTYSFKWAM 799
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BLAST of mRNA_L-elsbetiae_contig5752.14155.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.180e-18
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:   86 VVIIEAEDLEVSGAWSVISDTRASGNEYIAWEGLGFQEQNDDYREGDVITTIIHIPTAGTYSFQWLM 286
            VVIIEAEDL V+G W ++ D  ASG  YI WEGL   + N D  +GD+I+T + IPTAGTYSF+W M
Sbjct:  314 VVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNRDPGDGDIISTSVQIPTAGTYSFKWAM 380
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BLAST of mRNA_L-elsbetiae_contig5752.14155.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.560e-17
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2 
Query:   74 GCTAVVIIEAEDLEVSGAWSVISDTRASGNEYIAWEGLGFQEQNDDYREGDVITTIIHIPTAGTYSFQWLM 286
            GC  VV +EAEDL V G W V++D  ASG +YI WEGL   + N D  +GD+++  I +PTAGTYSF+WLM
Sbjct:  593 GCM-VVRMEAEDLPVLGDWRVVNDADASGGKYITWEGLSEGQNNGDPADGDIMSASIQVPTAGTYSFKWLM 662
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5752.14155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LED7_ECTSI9.800e-1958.21EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMV6_9PHAE2.180e-1858.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU28_ECTSI5.560e-1754.93EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5752contigL-elsbetiae_contig5752:2714..3138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816615.936344-CDS-L-elsbetiae_contig5752:2714..29341622816615.936344-CDS-L-elsbetiae_contig5752:2714..2934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5752 2715..2934 -
1691683686.9270854-CDS-L-elsbetiae_contig5752:2714..29341691683686.9270854-CDS-L-elsbetiae_contig5752:2714..2934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5752 2715..2934 -
1622816615.9467952-CDS-L-elsbetiae_contig5752:3070..31381622816615.9467952-CDS-L-elsbetiae_contig5752:3070..3138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5752 3071..3138 -
1691683686.9356852-CDS-L-elsbetiae_contig5752:3070..31381691683686.9356852-CDS-L-elsbetiae_contig5752:3070..3138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5752 3071..3138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5752.14155.1prot_L-elsbetiae_contig5752.14155.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5752 2715..3138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5752.14155.1

>prot_L-elsbetiae_contig5752.14155.1 ID=prot_L-elsbetiae_contig5752.14155.1|Name=mRNA_L-elsbetiae_contig5752.14155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
KRRPCHQRLLRPDNGSPVQNRRRLRLHRGGDNRGRRSRGIGRMERHFRHP
RKRKRVHRVGGPGLSRAERRLPGGRRHYHHHPHPHRRNLLLPVAYA
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mRNA from alignment at L-elsbetiae_contig5752:2714..3138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5752.14155.1 ID=mRNA_L-elsbetiae_contig5752.14155.1|Name=mRNA_L-elsbetiae_contig5752.14155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=425bp|location=Sequence derived from alignment at L-elsbetiae_contig5752:2714..3138- (Laminarionema elsbetiae ELsaHSoW15)
AAACGGCGTCCTTGCCACCAGAGACTTCTGCGGCCTGACAATGGAAGCCC
CGTGCAGAATCGGCGACGGTAAGTCGTTCTCCTGGTGGAAGAAGGAGACG
GTGGATGGGTGCATTGCAAGCGATGCCGGGGAAACAAAATATTGATTCAG
TGGCCGTCGTTTAAGCTCTAACAATACCTGCAATTTGTCTCCTTTTCCCC
GCAGGCTTCGGCTGCACCGCGGTGGTGATAATCGAGGCCGAAGATCTCGA
GGTATCGGGCGCATGGAGCGTCATTTCCGACACCCGCGCAAGCGGAAACG
AGTACATCGCGTGGGAGGGCCTGGGCTTTCAAGAGCAGAACGACGACTAC
CGGGAGGGCGACGTCATTACCACCATCATCCACATCCCCACCGCCGGAAC
CTACTCCTTCCAGTGGCTTATGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5752:2714..3138-

>mRNA_L-elsbetiae_contig5752.14155.1 ID=mRNA_L-elsbetiae_contig5752.14155.1|Name=mRNA_L-elsbetiae_contig5752.14155.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig5752:2714..3138- (Laminarionema elsbetiae ELsaHSoW15)
AAACGGCGTCCTTGCCACCAGAGACTTCTGCGGCCTGACAATGGAAGCCC
CGTGCAGAATCGGCGACGAAACGGCGTCCTTGCCACCAGAGACTTCTGCG
GCCTGACAATGGAAGCCCCGTGCAGAATCGGCGACGGCTTCGGCTGCACC
GCGGTGGTGATAATCGAGGCCGAAGATCTCGAGGTATCGGGCGCATGGAG
CGTCATTTCCGACACCCGCGCAAGCGGAAACGAGTACATCGCGTGGGAGG
GCCTGGGCTTTCAAGAGCAGAACGACGACTACCGGGAGGGCGACGTCATT
ACCACCATCATCCACATCCCCACCGCCGGAACCTACTCCTTCCAGTGGCT
TATGCGGCTTCGGCTGCACCGCGGTGGTGATAATCGAGGCCGAAGATCTC
GAGGTATCGGGCGCATGGAGCGTCATTTCCGACACCCGCGCAAGCGGAAA
CGAGTACATCGCGTGGGAGGGCCTGGGCTTTCAAGAGCAGAACGACGACT
ACCGGGAGGGCGACGTCATTACCACCATCATCCACATCCCCACCGCCGGA
ACCTACTCCTTCCAGTGGCTTATGCG
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