mRNA_L-elsbetiae_contig5748.14146.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5748.14146.1
Unique NamemRNA_L-elsbetiae_contig5748.14146.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.260e-7
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   79 ELRPKRDGEPGVDKPVREVIGCLTWLAAFT 168
            EL PKRD EPGVDKPVR+ IGCL W A FT
Sbjct: 1011 ELGPKRDDEPGVDKPVRQAIGCLMWPATFT 1040
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.090e-6
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   79 ELRPKRDGEPGVDKPVREVIGCLTWLAAFT 168
            +L PKRD EPGVDKPVR+ IGCL W A FT
Sbjct: 1564 DLGPKRDDEPGVDKPVRQAIGCLMWPATFT 1593
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5KW61_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW61_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.860e-6
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    7 FRAEVEE----EAEAWGRGVKID----VLRTPELRPKRDGEPGVDKPVREVIGCLTW 153
            +R E++E    E +A+G  V        L  P+LRPKRD EP VDKPVRE IGCL W
Sbjct:   58 YRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMW 114
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5L519_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L519_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.240e-6
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   67 LRTPELRPKRDGEPGVDKPVREVIGCLTW 153
            L  P+LRPKRD EP VDKPVRE IGCL W
Sbjct:  103 LPDPQLRPKRDDEPAVDKPVREAIGCLMW 131
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5L5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.780e-6
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   67 LRTPELRPKRDGEPGVDKPVREVIGCLTW 153
            L  P+LRPKRD EP VDKPVRE IGCL W
Sbjct:  435 LPDPQLRPKRDDEPAVDKPVREAIGCLMW 463
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5KNB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB1_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.790e-6
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   67 LRTPELRPKRDGEPGVDKPVREVIGCLTWL 156
            L  P+LRPKRD E  VDKPVRE IGCL WL
Sbjct:  276 LHDPQLRPKRDDESSVDKPVREAIGCLMWL 305
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5JKB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB8_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.320e-5
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   28 EAEAWGRGVKIDV----LRTPELRPKRDGEPGVDKPVREVIGCLTW 153
            E +A+G  V   V    L  P+LRPKR+ EP VDKP RE IGCL W
Sbjct:  236 EQQAFGAEVDASVSSQPLPDPQLRPKRNDEPAVDKPAREAIGCLMW 281
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BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5KUU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.670e-5
Identity = 21/29 (72.41%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:   67 LRTPELRPKRDGEPGVDKPVREVIGCLTW 153
            L  P+LRP RD EP VDKPVRE IGCL W
Sbjct:   33 LPDPQLRPTRDDEPAVDKPVREAIGCLMW 61
[Close]
BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5LAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS2_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    7 FRAEVEE----EAEAWGRGVKID----VLRTPELRPKRDGEPGVDKPVREVIGCLTW 153
            +R E++E    E +A+G  V        L  P+LRPKRD E  VDKPVRE IGCL W
Sbjct:  220 YRREIQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDELAVDKPVREAIGCLMW 276
[Close]
BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.420e-5
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:   67 LRTPELRPKRDGEPGVDKPVREVIGCLTW 153
            L  P+LRP +D EP VDKPVRE IGCL W
Sbjct:  829 LPDPQLRPNKDDEPAVDKPVREAIGCLMW 857
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5748.14146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE4.260e-776.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.090e-673.33Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW61_9PHAE1.860e-650.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L519_9PHAE2.240e-675.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5G4_9PHAE2.780e-675.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNB1_9PHAE3.790e-673.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKB8_9PHAE1.320e-554.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU2_9PHAE1.670e-572.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAS2_9PHAE2.480e-549.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZI6_9PHAE3.420e-568.97Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5748contigL-elsbetiae_contig5748:10667..11715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.964593-CDS-L-elsbetiae_contig5748:10666..107511622816614.964593-CDS-L-elsbetiae_contig5748:10666..10751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5748 10667..10751 +
1691683686.2037199-CDS-L-elsbetiae_contig5748:10666..107511691683686.2037199-CDS-L-elsbetiae_contig5748:10666..10751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5748 10667..10751 +
1622816614.97825-CDS-L-elsbetiae_contig5748:11632..117151622816614.97825-CDS-L-elsbetiae_contig5748:11632..11715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5748 11633..11715 +
1691683686.2155788-CDS-L-elsbetiae_contig5748:11632..117151691683686.2155788-CDS-L-elsbetiae_contig5748:11632..11715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5748 11633..11715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5748.14146.1prot_L-elsbetiae_contig5748.14146.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5748 10667..11715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5748.14146.1

>prot_L-elsbetiae_contig5748.14146.1 ID=prot_L-elsbetiae_contig5748.14146.1|Name=mRNA_L-elsbetiae_contig5748.14146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MAFRAEVEEEAEAWGRGVKIDVLRTPELRPKRDGEPGVDKPVREVIGCLT
WLAAFT
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mRNA from alignment at L-elsbetiae_contig5748:10667..11715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5748.14146.1 ID=mRNA_L-elsbetiae_contig5748.14146.1|Name=mRNA_L-elsbetiae_contig5748.14146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1049bp|location=Sequence derived from alignment at L-elsbetiae_contig5748:10667..11715+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTCCGCGCTGAAGTGGAAGAAGAAGCAGAAGCCTGGGGGCGCGG
GGTCAAGATCGACGTGCTCCGCACCCCAGAGCTAAGTCCCAATTCGCCAA
TTGGGCACAAACCTACTGATGTAGAGGCTATCCCGATGTCGTACAAAGAT
GTGGAAAGGTCTCAATACTGAGACTTGTTGGAAAGGGCCATGCAGAAAGA
GATGGACGGTCATAAGACTACGGGAACTTTCGCGGATGTAGACAAAGTAC
CCGACGGGCGCAAACTTATCAGTTCTAAGTGGGTGTTCTCGTGGAAGGTT
AACGAGCAGGGACTGATTTCCGACCTCAAGGCCCGTATGGTTGCGCGTGG
GTTCTCCCAGATCCGAAACGTGGACTTTCACCACTATTCCTCTGCATGCC
CGTCTGTGGCATCCATCAAGACCGTGTTGGGTGTAGCCAATGAAAAAGAA
ATGGCTGTATATACCACTGGGATGTCACGCAGGCGTACACCCACGCCACC
CTGAAGGAAGAGATTTATATGAGGTATCCCCCTGGTTGCGGTAATTTATC
TGGGAAGGTTGCCAAGGTGGTGCGTGCACTTTACGATCTAAAGCAAAGTC
GACGTGAGTGGGGGAACGAGGCTGCCGATACTCTGATAGAGAACGGGTAT
GAGCAGTGCAGGGCTGATCCGTGCATTTTCCGCAAGATGGTAGACGGTGT
TGTGGTGAGCACCATTGTGGTGTATGTGGACGACCTCATGTATGGGGGTT
GCAAGAAAGAGCGTACGGATTTGCTTGCTTCCCTGTAGAAAGAGTTTCCA
ATCAAGGACTTGGGAGAGTGCGTATGGTACGACGGATGTTGGATAGAGAG
GAACGCCGAGTTAGGCACAACCACCCTGTCTCAGAAGGGTGACATTGCAG
GACTGATGGAACGGTTTAACATGACGACAACCTCCACCACCCCTGCTACC
CCCGGTGCTGTTCTAGGGCCAAAGCGAGACGGCGAGCCCGGGGTGGACAA
GCCTGTGAGAGAGGTGATCGGGTGCTTGACGTGGCTAGCTGCGTTCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5748:10667..11715+

>mRNA_L-elsbetiae_contig5748.14146.1 ID=mRNA_L-elsbetiae_contig5748.14146.1|Name=mRNA_L-elsbetiae_contig5748.14146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig5748:10667..11715+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTCCGCGCTGAAGTGGAAGAAGAAGCAGAAGCCTGGGGGCGCGG
GGTCAAGATCGACGTGCTCCGCACCCCAGAGCTAAATGGCGTTCCGCGCT
GAAGTGGAAGAAGAAGCAGAAGCCTGGGGGCGCGGGGTCAAGATCGACGT
GCTCCGCACCCCAGAGCTAAGGCCAAAGCGAGACGGCGAGCCCGGGGTGG
ACAAGCCTGTGAGAGAGGTGATCGGGTGCTTGACGTGGCTAGCTGCGTTC
ACGGGCCAAAGCGAGACGGCGAGCCCGGGGTGGACAAGCCTGTGAGAGAG
GTGATCGGGTGCTTGACGTGGCTAGCTGCGTTCACG
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