mRNA_L-elsbetiae_contig5740.14141.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5740.14141.1
Unique NamemRNA_L-elsbetiae_contig5740.14141.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5740.14141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5740contigL-elsbetiae_contig5740:3709..4279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size573
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.478146-CDS-L-elsbetiae_contig5740:3708..40261622816614.478146-CDS-L-elsbetiae_contig5740:3708..4026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5740 3709..4026 +
1691683685.8489635-CDS-L-elsbetiae_contig5740:3708..40261691683685.8489635-CDS-L-elsbetiae_contig5740:3708..4026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5740 3709..4026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.4904156-UTR-L-elsbetiae_contig5740:4026..42791622816614.4904156-UTR-L-elsbetiae_contig5740:4026..4279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5740 4027..4279 +
1691683685.859843-UTR-L-elsbetiae_contig5740:4026..42791691683685.859843-UTR-L-elsbetiae_contig5740:4026..4279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5740 4027..4279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5740.14141.1prot_L-elsbetiae_contig5740.14141.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5740 3709..4026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5740.14141.1

>prot_L-elsbetiae_contig5740.14141.1 ID=prot_L-elsbetiae_contig5740.14141.1|Name=mRNA_L-elsbetiae_contig5740.14141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
PRRLFSSSAAVAEGRGRRRGCHLKATAQPGCESEQPRLILSPAYPLRTQL
RPACVLDCCRAMICSRCQCVCLVSHRVARVDCHRGGVMVVQSHCSALQRP
YKIDV*
back to top

mRNA from alignment at L-elsbetiae_contig5740:3709..4279+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5740.14141.1 ID=mRNA_L-elsbetiae_contig5740.14141.1|Name=mRNA_L-elsbetiae_contig5740.14141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=571bp|location=Sequence derived from alignment at L-elsbetiae_contig5740:3709..4279+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGGCGCCTATTCAGCAGTTCAGCAGCAGTAGCCGAAGGTAGAGGTAG
GCGCCGAGGGTGCCATCTCAAAGCAACCGCACAACCAGGGTGCGAGAGCG
AGCAGCCACGCCTCATATTGTCACCCGCCTATCCGCTGCGAACTCAACTT
CGCCCTGCTTGCGTGCTTGACTGCTGCCGTGCTATGATATGTTCTCGCTG
CCAATGCGTGTGTCTTGTCTCCCACCGTGTCGCCCGTGTGGACTGTCACC
GCGGCGGTGTGATGGTGGTCCAATCACACTGCTCCGCCTTACAAAGGCCT
TACAAAATCGACGTGTGATTGGTGGGAGATAGGCCGCCGCCTACTCTAAA
ACGTAGTCAAATTGGGAAAAGTTCCTCCGGCCTTACAAAAAAAATGCTTA
TGTATGGGGGCTGTTCCAGATTAGTCTTACGGGAAACATGCACTACAATA
TGGAGGCATGTGTCCGTACATATATACATACATATACATACGTACGTCCA
ATAAAAAAATAAAAAACAGACAGGCAGACAGGCAGACAGGTACTCGTCCT
GAATTGCCGAAGCAGAAGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5740:3709..4279+

>mRNA_L-elsbetiae_contig5740.14141.1 ID=mRNA_L-elsbetiae_contig5740.14141.1|Name=mRNA_L-elsbetiae_contig5740.14141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5740:3709..4279+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGGCGCCTATTCAGCAGTTCAGCAGCAGTAGCCGAAGGTAGAGGTAG
GCGCCGAGGGTGCCATCTCAAAGCAACCGCACAACCAGGGTGCGAGAGCG
AGCAGCCACGCCTCATATTGTCACCCGCCTATCCGCTGCGAACTCAACTT
CGCCCTGCTTGCGTGCTTGACTGCTGCCGTGCTATGATATGTTCTCGCTG
CCAATGCGTGTGTCTTGTCTCCCACCGTGTCGCCCGTGTGGACTGTCACC
GCGGCGGTGTGATGGTGGTCCAATCACACTGCTCCGCCTTACAAAGGCCT
TACAAAATCGACGTGTGACCGCGGCGCCTATTCAGCAGTTCAGCAGCAGT
AGCCGAAGGTAGAGGTAGGCGCCGAGGGTGCCATCTCAAAGCAACCGCAC
AACCAGGGTGCGAGAGCGAGCAGCCACGCCTCATATTGTCACCCGCCTAT
CCGCTGCGAACTCAACTTCGCCCTGCTTGCGTGCTTGACTGCTGCCGTGC
TATGATATGTTCTCGCTGCCAATGCGTGTGTCTTGTCTCCCACCGTGTCG
CCCGTGTGGACTGTCACCGCGGCGGTGTGATGGTGGTCCAATCACACTGC
TCCGCCTTACAAAGGCCTTACAAAATCGACGTGTGA
back to top