mRNA_L-elsbetiae_contig574.14140.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig574.14140.1
Unique NamemRNA_L-elsbetiae_contig574.14140.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig574.14140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig574contigL-elsbetiae_contig574:35336..35905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size544
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig574.14140.1prot_L-elsbetiae_contig574.14140.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig574 35436..35878 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.2830167-UTR-L-elsbetiae_contig574:35335..354351622816614.2830167-UTR-L-elsbetiae_contig574:35335..35435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig574 35336..35435 -
1691683685.7291346-UTR-L-elsbetiae_contig574:35335..354351691683685.7291346-UTR-L-elsbetiae_contig574:35335..35435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig574 35336..35435 -
1622816614.3244514-UTR-L-elsbetiae_contig574:35878..359051622816614.3244514-UTR-L-elsbetiae_contig574:35878..35905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig574 35879..35905 -
1691683685.7588582-UTR-L-elsbetiae_contig574:35878..359051691683685.7588582-UTR-L-elsbetiae_contig574:35878..35905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig574 35879..35905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.297036-CDS-L-elsbetiae_contig574:35435..355411622816614.297036-CDS-L-elsbetiae_contig574:35435..35541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig574 35436..35541 -
1691683685.7394235-CDS-L-elsbetiae_contig574:35435..355411691683685.7394235-CDS-L-elsbetiae_contig574:35435..35541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig574 35436..35541 -
1622816614.3091178-CDS-L-elsbetiae_contig574:35567..358781622816614.3091178-CDS-L-elsbetiae_contig574:35567..35878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig574 35568..35878 -
1691683685.750346-CDS-L-elsbetiae_contig574:35567..358781691683685.750346-CDS-L-elsbetiae_contig574:35567..35878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig574 35568..35878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig574.14140.1

>prot_L-elsbetiae_contig574.14140.1 ID=prot_L-elsbetiae_contig574.14140.1|Name=mRNA_L-elsbetiae_contig574.14140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MYVYTTQTLCCTLCCRSTDNNGHTCEHTHMPGPSSSVAFRLLQGEGPRVS
KVSYALLLQQLKPHGFEHYGQSRSAGLSGLRLAKVAHEINTLEVLGTLDQ
YCPLTLTRSPFPDPVVIECMRFTLPQLQQPKPTEDTKK*
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mRNA from alignment at L-elsbetiae_contig574:35336..35905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig574.14140.1 ID=mRNA_L-elsbetiae_contig574.14140.1|Name=mRNA_L-elsbetiae_contig574.14140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig574:35336..35905- (Laminarionema elsbetiae ELsaHSoW15)
GGGCGGGGGGAGATTCAGACACCACGTATGTATGTGTATACAACGCAAAC
ACTGTGTTGTACGTTATGCTGCCGATCAACAGACAACAACGGTCACACGT
GTGAACACACACATATGCCAGGCCCTTCCTCATCCGTGGCTTTCCGTCTG
CTTCAGGGGGAGGGGCCCCGGGTATCAAAAGTAAGTTATGCCTTGCTCTT
ACAGCAGCTCAAACCTCACGGCTTTGAACACTACGGTCAGAGCAGATCAG
CCGGGCTCAGCGGCCTACGTTTAGCAAAAGTGGCACATGAAATAAACACA
CTAGAAGTCCTGGGCACGCTCGACCAGTACTGTCCATTGCTGATTTTGTT
ATACTGTTTTGTAGAACCCTAACCCGATCACCATTCCCCGACCCCGTGGT
GATAGAGTGCATGCGTTTTACCCTTCCCCAACTTCAGCAACCAAAGCCAA
CAGAGGACACCAAAAAATAATGATACTCGGATGAAGAATTTGCACAGCAG
TGCTGCACTGCCAAGCCACAATCGCAGCCGATCGAACTTCATCGACCTCG
AGAAGCCCAACCGAAACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig574:35336..35905-

>mRNA_L-elsbetiae_contig574.14140.1 ID=mRNA_L-elsbetiae_contig574.14140.1|Name=mRNA_L-elsbetiae_contig574.14140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig574:35336..35905- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTGTATACAACGCAAACACTGTGTTGTACGTTATGCTGCCGATC
AACAGACAACAACGGTCACACGTGTGAACACACACATATGCCAGGCCCTT
CCTCATCCGTGGCTTTCCGTCTGCTTCAGGGGGAGGGGCCCCGGGTATCA
AAAGTAAGTTATGCCTTGCTCTTACAGCAGCTCAAACCTCACGGCTTTGA
ACACTACGGTCAGAGCAGATCAGCCGGGCTCAGCGGCCTACGTTTAGCAA
AAGTGGCACATGAAATAAACACACTAGAAGTCCTGGGCACGCTCGACCAG
TACTGTCCATTATGTATGTGTATACAACGCAAACACTGTGTTGTACGTTA
TGCTGCCGATCAACAGACAACAACGGTCACACGTGTGAACACACACATAT
GCCAGGCCCTTCCTCATCCGTGGCTTTCCGTCTGCTTCAGGGGGAGGGGC
CCCGGGTATCAAAAGTAAGTTATGCCTTGCTCTTACAGCAGCTCAAACCT
CACGGCTTTGAACACTACGGTCAGAGCAGATCAGCCGGGCTCAGCGGCCT
ACGTTTAGCAAAAGTGGCACATGAAATAAACACACTAGAAGTCCTGGGCA
CGCTCGACCAGTACTGTCCATTAACCCTAACCCGATCACCATTCCCCGAC
CCCGTGGTGATAGAGTGCATGCGTTTTACCCTTCCCCAACTTCAGCAACC
AAAGCCAACAGAGGACACCAAAAAATAAAACCCTAACCCGATCACCATTC
CCCGACCCCGTGGTGATAGAGTGCATGCGTTTTACCCTTCCCCAACTTCA
GCAACCAAAGCCAACAGAGGACACCAAAAAATAA
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