mRNA_L-elsbetiae_contig5734.14127.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5734.14127.1
Unique NamemRNA_L-elsbetiae_contig5734.14127.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.620e-27
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:   10 QITVKNIHIRYEDELSLDDGV-TVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGGKGGE 189
            QITVKNIHIRYEDELSLDDG  TVPRPLSAG+TLRQLVVQTVDEQWTPTYVQ AGGGK GE
Sbjct:  162 QITVKNIHIRYEDELSLDDGTGTVPRPLSAGITLRQLVVQTVDEQWTPTYVQGAGGGKAGE 222
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.630e-27
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:   10 QITVKNIHIRYEDELSLDDGV-TVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGGKGGE 189
            QITVKNIHIRYEDELSLDDG  TVPRPLSAG+TLRQLVVQTVDEQWTPTYVQ AGGGK GE
Sbjct:  193 QITVKNIHIRYEDELSLDDGTGTVPRPLSAGITLRQLVVQTVDEQWTPTYVQGAGGGKAGE 253
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A8H8JLR6_9AGAM (Vacuolar protein sorting-associated protein 13 n=3 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JLR6_9AGAM)

HSP 1 Score: 64.7 bits (156), Expect = 1.360e-10
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGG 177
            N  Q+TVKNIHIRYED +S         P SAG+TL     Q+V+EQW PT++Q+  GG
Sbjct:  158 NNVQVTVKNIHIRYEDSISAPG-----HPFSAGITLAGFTAQSVNEQWVPTFIQDTKGG 211
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A8H3AS95_9AGAM (Hypothetical protein (Fragment) n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AS95_9AGAM)

HSP 1 Score: 60.8 bits (146), Expect = 3.080e-9
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGG 177
            N  QITVKNIHIRYED +S         P SAG+TL     ++VDE W PT++Q+   G
Sbjct:  158 NNLQITVKNIHIRYEDSISAPG-----HPFSAGITLAGFTAKSVDENWIPTFIQDTRAG 211
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A074SBX0_9AGAM (Vacuolar protein sorting-associated protein vps13 n=5 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074SBX0_9AGAM)

HSP 1 Score: 60.8 bits (146), Expect = 3.100e-9
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGG 177
            N  QITVKNIHIRYED +S         P SAG+TL     ++VDE W PT++Q+   G
Sbjct:  158 NNLQITVKNIHIRYEDSISAPG-----HPFSAGITLAGFTAKSVDENWIPTFIQDTRAG 211
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: L8X206_THACA (Vacuolar protein sorting-associated protein vps13 n=1 Tax=Thanatephorus cucumeris (strain AG1-IA) TaxID=983506 RepID=L8X206_THACA)

HSP 1 Score: 60.5 bits (145), Expect = 4.210e-9
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGG 177
            N  QITVKNIHIRYED +S         P SAG+TL      +VDE W PT++Q+   G
Sbjct:  175 NNVQITVKNIHIRYEDSISAPG-----HPFSAGITLAGFTANSVDENWIPTFIQDTRAG 228
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A8H7IKR8_9AGAM (Vacuolar protein sorting-associated protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7IKR8_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 4.230e-9
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGG 177
            N  QITVKNIHIRYED +S         P SAG+TL      +VDE W PT++Q+   G
Sbjct:  123 NNVQITVKNIHIRYEDSISAPG-----HPFSAGITLAGFTANSVDENWIPTFIQDTRAG 176
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A8H8NWG8_9AGAM (Vacuolar protein sorting-associated protein 13 n=10 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NWG8_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 4.230e-9
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGG 177
            N  QITVKNIHIRYED +S         P SAG+TL      +VDE W PT++Q+   G
Sbjct:  158 NNVQITVKNIHIRYEDSISAPG-----HPFSAGITLAGFTANSVDENWIPTFIQDTRAG 211
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A166M4Y0_9AGAM (DUF1162-domain-containing protein n=3 Tax=unclassified Peniophora TaxID=2635284 RepID=A0A166M4Y0_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 7.910e-9
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGG 174
            N  QIT+KNIH+RYED+LS+ D      P +AG+TL  L   +V++QW P +++   G
Sbjct:  153 NNLQITIKNIHVRYEDKLSVPD-----HPFAAGLTLASLTAFSVNDQWQPAFIESTAG 205
[Close]
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Match: A0A6G1HFY2_9PEZI (Vacuolar protein sorting-associated protein n=1 Tax=Aulographum hederae CBS 113979 TaxID=1176131 RepID=A0A6G1HFY2_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 7.910e-9
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   10 QITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTPTYVQEAGGG 177
            Q+T+KNIHIRYED +S D G     P + G+TL      + DE WTPT++Q + GG
Sbjct:  152 QVTIKNIHIRYEDSIS-DQG----HPFALGITLESFDAVSTDENWTPTFIQSSSGG 202
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5734.14127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6C3_9PHAE1.620e-2791.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF5_ECTSI1.630e-2791.80FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8H8JLR6_9AGAM1.360e-1050.85Vacuolar protein sorting-associated protein 13 n=3... [more]
A0A8H3AS95_9AGAM3.080e-949.15Hypothetical protein (Fragment) n=1 Tax=Rhizoctoni... [more]
A0A074SBX0_9AGAM3.100e-949.15Vacuolar protein sorting-associated protein vps13 ... [more]
L8X206_THACA4.210e-949.15Vacuolar protein sorting-associated protein vps13 ... [more]
A0A8H7IKR8_9AGAM4.230e-949.15Vacuolar protein sorting-associated protein n=1 Ta... [more]
A0A8H8NWG8_9AGAM4.230e-949.15Vacuolar protein sorting-associated protein 13 n=1... [more]
A0A166M4Y0_9AGAM7.910e-944.83DUF1162-domain-containing protein n=3 Tax=unclassi... [more]
A0A6G1HFY2_9PEZI7.910e-948.21Vacuolar protein sorting-associated protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5734contigL-elsbetiae_contig5734:3195..3389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue5.8e-23
Seed eggNOG ortholog2880.D7FMF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816612.9977994-CDS-L-elsbetiae_contig5734:3194..33891622816612.9977994-CDS-L-elsbetiae_contig5734:3194..3389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5734 3195..3389 +
1691683684.9486957-CDS-L-elsbetiae_contig5734:3194..33891691683684.9486957-CDS-L-elsbetiae_contig5734:3194..3389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5734 3195..3389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5734.14127.1prot_L-elsbetiae_contig5734.14127.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5734 3195..3389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5734.14127.1

>prot_L-elsbetiae_contig5734.14127.1 ID=prot_L-elsbetiae_contig5734.14127.1|Name=mRNA_L-elsbetiae_contig5734.14127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
NKKQITVKNIHIRYEDELSLDDGVTVPRPLSAGVTLRQLVVQTVDEQWTP
TYVQEAGGGKGGER*
back to top

mRNA from alignment at L-elsbetiae_contig5734:3195..3389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5734.14127.1 ID=mRNA_L-elsbetiae_contig5734.14127.1|Name=mRNA_L-elsbetiae_contig5734.14127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=195bp|location=Sequence derived from alignment at L-elsbetiae_contig5734:3195..3389+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAAAAACAGATCACGGTGAAGAACATTCACATCCGGTACGAGGACGA
ACTGAGCCTTGACGACGGCGTGACAGTCCCGCGCCCCCTGTCGGCCGGAG
TCACCCTTCGGCAGCTCGTGGTGCAGACCGTCGACGAGCAGTGGACGCCG
ACGTACGTGCAGGAAGCTGGCGGTGGCAAGGGGGGCGAAAGGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5734:3195..3389+

>mRNA_L-elsbetiae_contig5734.14127.1 ID=mRNA_L-elsbetiae_contig5734.14127.1|Name=mRNA_L-elsbetiae_contig5734.14127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig5734:3195..3389+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAAAAACAGATCACGGTGAAGAACATTCACATCCGGTACGAGGACGA
ACTGAGCCTTGACGACGGCGTGACAGTCCCGCGCCCCCTGTCGGCCGGAG
TCACCCTTCGGCAGCTCGTGGTGCAGACCGTCGACGAGCAGTGGACGCCG
ACGTACGTGCAGGAAGCTGGCGGTGGCAAGGGGGGCGAAAGGTAAAACAA
AAAACAGATCACGGTGAAGAACATTCACATCCGGTACGAGGACGAACTGA
GCCTTGACGACGGCGTGACAGTCCCGCGCCCCCTGTCGGCCGGAGTCACC
CTTCGGCAGCTCGTGGTGCAGACCGTCGACGAGCAGTGGACGCCGACGTA
CGTGCAGGAAGCTGGCGGTGGCAAGGGGGGCGAAAGGTAA
back to top