mRNA_L-elsbetiae_contig5718.14105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5718.14105.1
Unique NamemRNA_L-elsbetiae_contig5718.14105.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5718.14105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5718contigL-elsbetiae_contig5718:264..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.9445658-CDS-L-elsbetiae_contig5718:263..3601622816610.9445658-CDS-L-elsbetiae_contig5718:263..360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5718 264..360 -
1691683683.426119-CDS-L-elsbetiae_contig5718:263..3601691683683.426119-CDS-L-elsbetiae_contig5718:263..360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5718 264..360 -
1622816610.9577193-CDS-L-elsbetiae_contig5718:678..8391622816610.9577193-CDS-L-elsbetiae_contig5718:678..839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5718 679..839 -
1691683683.4364421-CDS-L-elsbetiae_contig5718:678..8391691683683.4364421-CDS-L-elsbetiae_contig5718:678..839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5718 679..839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5718.14105.1prot_L-elsbetiae_contig5718.14105.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5718 264..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5718.14105.1

>prot_L-elsbetiae_contig5718.14105.1 ID=prot_L-elsbetiae_contig5718.14105.1|Name=mRNA_L-elsbetiae_contig5718.14105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
LRSGLSYSPPTPASAPEPPEKEQVSDEPDAGQQGPAAESREDSAAASFLE
RMNGTASGAWKPEAAAGASTPPPPAAEFPSSSDSSD
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mRNA from alignment at L-elsbetiae_contig5718:264..839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5718.14105.1 ID=mRNA_L-elsbetiae_contig5718.14105.1|Name=mRNA_L-elsbetiae_contig5718.14105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig5718:264..839- (Laminarionema elsbetiae ELsaHSoW15)
CTCCGGTCCGGTTTGTCGTACTCCCCCCCCACGCCGGCGTCGGCCCCCGA GCCCCCGGAGAAGGAGCAGGTTAGCGACGAGCCTGATGCGGGACAGCAAG GCCCCGCGGCGGAATCGAGGGAAGATTCCGCGGCGGCAAGCTTCCTGGAG AGAATGAATGGGTGAGAGCCGTATGCACCATACCATATACCGTATTCGTG TTTGAGAACCCCCCCCCCCCCTCCCCATCACCACCTTTTCGGCCGATTAG AATCCCCCACGTGACCTCAAAAACGTTACCGAAATCGAAAATATTTCCCG CCGATTAGAACTTTCAGTCAACCTATCACATCGGCGGCCCCCAGGGGATA TCCGCGGTAATCGATTTCGCTCCTGGCGCGGGGGCACTGATTGTCCAGAT TCGAGCCCCAAATTCGATTCCAATTCGCTTCCTCCAAATTGGCTGACATT TCTAACGTTAAAGACCCGCCCCTCAACAGGACGGCGTCAGGGGCCTGGAA ACCCGAAGCAGCCGCCGGCGCATCGACGCCACCCCCTCCCGCCGCTGAGT TCCCTTCTTCTTCCGACTCTTCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5718:264..839-

>mRNA_L-elsbetiae_contig5718.14105.1 ID=mRNA_L-elsbetiae_contig5718.14105.1|Name=mRNA_L-elsbetiae_contig5718.14105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig5718:264..839- (Laminarionema elsbetiae ELsaHSoW15)
CTCCGGTCCGGTTTGTCGTACTCCCCCCCCACGCCGGCGTCGGCCCCCGA
GCCCCCGGAGAAGGAGCAGGTTAGCGACGAGCCTGATGCGGGACAGCAAG
GCCCCGCGGCGGAATCGAGGGAAGATTCCGCGGCGGCAAGCTTCCTGGAG
AGAATGAATGGCTCCGGTCCGGTTTGTCGTACTCCCCCCCCACGCCGGCG
TCGGCCCCCGAGCCCCCGGAGAAGGAGCAGGTTAGCGACGAGCCTGATGC
GGGACAGCAAGGCCCCGCGGCGGAATCGAGGGAAGATTCCGCGGCGGCAA
GCTTCCTGGAGAGAATGAATGGGACGGCGTCAGGGGCCTGGAAACCCGAA
GCAGCCGCCGGCGCATCGACGCCACCCCCTCCCGCCGCTGAGTTCCCTTC
TTCTTCCGACTCTTCCGACGACGGCGTCAGGGGCCTGGAAACCCGAAGCA
GCCGCCGGCGCATCGACGCCACCCCCTCCCGCCGCTGAGTTCCCTTCTTC
TTCCGACTCTTCCGAC
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