mRNA_L-elsbetiae_contig5715.14102.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5715.14102.1 vs. uniprot
Match: D8LF55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF55_ECTSI) HSP 1 Score: 731 bits (1887), Expect = 3.210e-226 Identity = 936/2033 (46.04%), Postives = 1055/2033 (51.89%), Query Frame = 1
Query: 1 MSGKRTLSLSAYKKNKEALAVAPAKRERRLGFGESASTREARAHELQLETQVIGRLDELLKRCGKDPGSSQAISNWLCAEGLEGHAKKGLSRILCHVKVWSRTLRSEGATPKKEAGEDAAEVRARAAFGACVSAINAVDSLSYRFAEKNNARNGESELVRVAGEVLAGIAEAMLGAGAKPRARGLHPTEHDQMSRMVDSWWKRGAMPPPSLEGIGKRLAALGPGDAGSSDGDDSTTATXTARSSKVRAESKNKRAAWARAPAAAAVRSANDSPGAATLGPAGVGGLSPPRRPSSGGSAG--GRVPVAPQTDSERQDGLEAALKELLSRSVAMAGGWWAQSFQGSGPFPQGPEGCWSLQFRRATEDPGYGQRQVTGPLGVNGEHRRELAGGGGDDGVDLGSMKTEAV--DGADSDA-APSTPSTVPSEXXXXXXXXXXLPAAVKTEEAKGLE-----AKPA-VDGGKNGTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDEARR-AGKEKGKAKALERERQKKXXXXXRQKIIADSRKXXXXXXXXXXXXXXX-HKADELARRSRGTAGQEEXXXXXXXXXXXXXXXXXXXXXEREKGRKRDPQAAAEKGADQPKGDAAEESRRDHRGNSRSREGQDRPXXXXXXXXXXXXXXXXXXXXXXRAGGVGGGVGSSGSGGRDKGESRRRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSRGRQELQEQPRAEDRGAGD----------------------GWRKQGSSSQRAREPDLTADGGRWALEG-REREAGDKGERKRRRSDPSEPEG--MSGRHGGGDRYLDEVAEDDRGGS--HRPSKKKSXXXXXXXXXXXGERHSDAAATRLLLARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYAAAALPQSDSGRRSLEAHRQRSEPELGRNGSEVRDAPRLGTCRPRKDSA-SPRRGDRRDGSEKRARRGSGG---DALNLQSRPGASRERHARDGG---RDSAVGASXXXXXXXXXXXLVDGGLGLPGMEGYSSAASPPVGLEL--GGVGTASS-----GHDRQGLGSLRALNAYGPALGRGGSPDGG-RRRRGDGGRESGGRPRLAAG-DAYGPGMDDSSRGGATRSERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------YSRSADKSLRESSGRRGDAGSRQPSSSNARGSRRSPERGTSAATARDGSYRRRPGSPSRDDSRGRSSGARDRDGRHSKGGXXXSGSSALSGXDSGSRLGSXXXXXXXXXXXXXXXXXVSIIGGTPVLMPVAKMMEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXEDRWAGNSPPSEDDLDRTGSRSEAHARRXXXXXXXXSHRSTADSRDEGQAQGQASPXXXXXX-EEGELVMESSSAPAVLPSPP--SRKKSRWGDFESEASPFGVGGGGGRSEGF--AASSRVDRWPSRGGEERSVGDGGGGVTMPTRGRNASSPERSSPRGSRSGKRHGSAADAGTEQRARRSGGGAEEGSPPRSKEPTEDGDPSPALGQDSGSPRAVPADPVGTAAAAQQEESVETGEPSSSPPPSPTAGEDGRGDSGSIEEGSLDAAAPVGDAPTAGSSAAGPAQTQAAVVAVAAAVAATGQEGAAPATGXXXXXXXXXXXXXXVRSSKDDAAGNSXXXXXXXXXXXXXXXXXXPNDGGASALAVSRSP-SAKGSDSDRSALSGGGP---ADARGGVTRRRSSGDLTPFLRKGGGSSRXKPGGEPDSPAD-PAADATAEPGGR-AGTTPSDDGPAVGDSAAAAAATTAV-TKPQRASVYSRLGAPPSEAKQD--TVKAAAGTPAPDSAAPPRGIASTWGSGGS--ADWASGRDGSGGXXXXXXXXXXXPAAAEVSDTTVVPIRRTK-NGSKEEARPVGGGAGRLMNAALSSSRD 5718
MSGKR +SLSAYKKNK ALAV P K+ERRLGFGES STREARAHELQLETQVIGRLD LLKRCG+DPGS QAISNWLCAEGLEGHAKKGLSRILC+V+VWSRTLR+EG PK + D AEV+ARAAFGACV AINAVDSLSYRFAEK + E+ELV+ AGEVLAG+ EA++GAG+KPR RGLHPTEH Q+SRMVD+W +RG++P PSLE IGK+L AL PG D + +SSK KRAAW R PAAAA+ +++ P V LSPPR PSSGG+ G APQT++ER LE+ L +LL+R+VA+ G WWAQ+FQG GPFPQGPEGCWSLQ++RA EDPG+ + QVTG +G NG+ R G GVDLGS+KTEA DG DSD APSTPSTVPSE XX+P VKTE K A PA V +NGT A XXXXXXXXXXXXXXXXXXXXXXXXXX AGKEKG XXXX RQ++IA S XXXXXXXXXXX +AD LARR++ XXXXXXXXXXXXXX REK R+RD Q +G+A EESR XXXXXXXXXXXXXXXXXX G G S +G DK E R G+ + GR+ E R D G G SSSQRAREPD A+G R + RERE G ERKRRRSD SE EG +S RH G DR+ D+ AEDDR S HRPSKKK XXXXXXXXXXXG HS+ GYAA AL Q D RS E R RSE E GR SE+RDAPR R R DS SPRR D GSEKRARRGS G D Q R G SRER + G RDS GAS XXXXXXXX L PGMEGY SA+SPP LE GG+G +S HDRQGLGS +AL+AY P LGR SPDGG RRRRGDGG++ G RPRLA+ D YGPG+D RGG RSER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YSR AD + RESSGRRGD GS S SNARGSR SPERGT + ARDG+ RRRPGSP+RDDSRGR XX X XXXXXXXX VSIIGGTPVLMPVAKMMEA XXXX XXXXX X +DRW S G XXXX RS ADS++E QA GQASP EEGELV++ S LP+PP S +KSRWGD E A+ G GGGG GF AA+ RW E+ VG GG P G +A E + + S KR+ + SP RS T A SPT D RG+ E S +AAAP D P GP V QEG ++ D A S P+ GG + R P S + SDSD S +GG P A A G RRRSSGD+ FLRKGG R +PG EP SPA PAADAT E + + P + P G +A +AV TKPQRASV+SRLGAPPSEAK+D T +AA AAP RG+ WGS S AD + +G AA + P+RR K +G K + R VGGGAGRLMNAALSSSR+
Sbjct: 1 MSGKR-ISLSAYKKNK-ALAVTPKKKERRLGFGESVSTREARAHELQLETQVIGRLDSLLKRCGRDPGSDQAISNWLCAEGLEGHAKKGLSRILCYVRVWSRTLRAEGVAPKDK-DRDKAEVKARAAFGACVCAINAVDSLSYRFAEKKTP-DAENELVKTAGEVLAGMMEAVVGAGSKPRRRGLHPTEHAQLSRMVDAWLRRGSVPSPSLESIGKQLLALDPGGDAVVSPDRNGARAGKGKSSK-------KRAAWVRVPAAAAIGDSSEG----KQSPGDVARLSPPRHPSSGGAGGPAASAGAAPQTEAERHASLESVLTDLLARNVAVPGAWWAQAFQGGGPFPQGPEGCWSLQYQRANEDPGHRRNQVTGLIGANGDRRL-----GAGSGVDLGSVKTEAAGADGLDSDGGAPSTPSTVPSEASPSPERVXXVPE-VKTEGGKDSATISPAAAPATVRSVENGTAAPAAARAQKGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKEKGXXXXXXXXXXXXXXXXQRQEMIAASXXXXXXXXXXXXXGKEAKERADSLARRTK------------LXXXXXXXXXXXXXXRGREKDRRRD----------QARGEAGEESRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERTNGRGKDEGRYSDAAGRLDKEERERGGAEGDR-----------------------------ASGRRXXXEGRRHHDLGEGSRGGXXXXXXXXXXXXXXXXXXXXXXXXXSSSQRAREPDFAAEGVRRKSDNSREREGG---ERKRRRSDLSESEGASVSARHDG-DRHPDDHAEDDRNSSNTHRPSKKKXXXXXXXXXXXXGXXHSEP--------------------------HHRPGRAGSSESSRKRSCDFDAAPQLEGYAAVAL-QPDPLHRSAETRRHRSEQESGRTSSELRDAPRR--SRSRADSGLSPRRDDGHSGSEKRARRGSNGGSGDGYAGQGRTGTSRERPSARRGMTPRDSVTGASSXXXXXXXXGAL-------PGMEGYGSASSPPASLEFSGGGLGGKTSERGRDAHDRQGLGSWKALDAYEPGLGRDSSPDGGGRRRRGDGGKDGGARPRLASSVDRYGPGVDSHGRGGGGRSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSELDYSRVADMNGRESSGRRGDIGSHPSSLSNARGSRWSPERGTQSTAARDGTNRRRPGSPARDDSRGR----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXMGNLGMGMGVSIIGGTPVLMPVAKMMEASLRGGXXXXDRHSASGGNRLDDRDXXXXXXXHGTGRREDER-------------DDRWGVRSRXXXXXXXXXGGXXXXXXXXXXXXGADI-RRSRADSKNEAQALGQASPQEPEEKPEEGELVLDPSMG---LPNPPAPSARKSRWGDVEKAATFAGTRGGGGGDRGFVAAAARGESRWSQEERGEKLVGSDDGGKRAPGDGDDAGG-ELTVATEATSSKRNSA--------------------SPQRSPRGT-------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPTVTADERGELNESGE-SGEAAAPANDNP-------GPEVLPEQTATVEDEGQQETQEGRDASSSAAGAEREAPVERSGAEEPSDSA---SCGKPSGGEASDGPEADATPSPGGDA-----RQPGSLQRSDSDHS--TGGTPDASAAAAGVRHRRRSSGDIGSFLRKGG---RRRPG-EPASPAAAPAADATVETAADPSSSAPDPNSPVEGTPSAPDMGGSAVETKPQRASVFSRLGAPPSEAKKDGKTPPSAANPSGTPEAAPARGL-DAWGSSSSTAADGPASGEGK---------NAAGATAASDDSPALTPVRRVKGSGDKNDGRKVGGGAGRLMNAALSSSRE 1828
BLAST of mRNA_L-elsbetiae_contig5715.14102.1 vs. uniprot
Match: A0A6H5JK50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK50_9PHAE) HSP 1 Score: 610 bits (1572), Expect = 6.320e-187 Identity = 712/1360 (52.35%), Postives = 796/1360 (58.53%), Query Frame = 1
Query: 1 MSGKRTLSLSAYKKNKEALAVAPAKRERRLGFGESASTREARAHELQLETQVIGRLDELLKRCGKDPGSSQAISNWLCAEGLEGHAKKGLSRILCHVKVWSRTLRSEGATPKKEAGEDAAEVRARAAFGACVSAINAVDSLSYRFAEKNNARNGESELVRVAGEVLAGIAEAMLGAGAKPRARGLHPTEHDQMSRMVDSWWKRGAMPPPSLEGIGKRLAALGPGDAGSSDGDDSTTATXT-ARSSKVRAESKNKRAAWARAPAAAAVRSANDSPGAATLGPAGVGGLSPPRRPSSGGSAGGRVP---VAPQTDSERQDGLEAALKELLSRSVAMAGGWWAQSFQGSGPFPQGPEGCWSLQFRRATEDPGYGQRQVTGPLGVNGEHRRELAGGGGDDGVDLGSMKTEAVD--GADSDA-APSTPSTVPSEXXXXXXXXXXLPAAVKTEEAKGLE-----AKPAVDGG-KNGTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDEARR-AGKEKGKAKALERERQKKXXXXXRQKIIADSRKXXXXXXXXXXXXXXX-HKADELARRSRGTAGQEEXXXXXXXXXXXXXXXXXXXXXEREKGRKRDPQAAAEKGADQPKGDAAEESRRDHR----------------------GNSRSREGQDRPXXXXXXXXXXXXXXXXXXXXXXRAGGVGGGVGSSGSGGRDKGESRRRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSRGRQELQEQPRAEDRGAGDGWRKQGSSSQRAREPDLTADGGRWALEG-REREAGDKGERKRRRSDPSEPEG--MSGRHGGGDRYLDEVAEDDRGGS--HRPSKKKSXXXXXXXXXXXGE-------RHSDAAATRLLLARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYAAAALPQSDSGRRSLEAHRQRSEPELGRNGSEVRDAPRLGTCRPRKDSA-SPRRGDRRDGSEKRARRGSGG---DALNLQSRPGASRER-HARDGG--RDSAVGASXXXXXXXXXXXLVDGGLGLPGMEGYSSAASPPVGLEL--GGVGTASS-----GHDRQGLGSLRALNAYGPALGRGGSPDGGRRRRGD-GGRESGGRPRLAAG-DAYGPGMDDSSRGGA----------------------TRSERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRSADKSLRESSGRRGDAGSRQPSSSNARGSRRSPERGTSAATARDGSYRRRPGSPSRDDSRGRSSGARDRDGRHSKGGXXXSGSSALSGXDSGSRLGSXXXXXXXXXXXXXXXXXVSIIGGTPVLMPVAKMMEA 3819
MSGKR +SLSAYK+NK ALA P K ERRLGFGES STREARAHELQLETQVIGRLD LLKRCG+DPGS QAISNWLCAEGLEGHAKKGLSRILC+V+VWSRTLR+EG +P+ + D AEV+ARAAF ACV AINAV+SLSYRFAEK + +GE+ELV+ AGEVLAG+ EA+LGAG+KPR RGLHPTEH Q+SRMVD+W +RG++P PSLE IGK+L AL PG GD + AR+ K ++ NKRAAW R PAAAA+ + + P V LSP R SSGG APQT++ER LE+ L ++L+R+VA+ G WWAQ+FQG GPFPQGPEGCWSLQ++RA EDPG+ + QVTG +G +G+HR G GVDLGS+KTEA D G DSD APSTPSTV XXXXXXXXXX A KTEE K L A PA G +NGT A XXXXXXXXXXXXXXXXXXXXXXXXXX AGKE XXX RQ++IA SR XXXXXXXXXXX +AD LARR++ XXXXXXXXXXXXXXXXXXX REK R+R Q +G+A EESR G SR+ ++R GG G SG RDK E RR XXXXXXXXXXXXXXXXXXXXXXX S SSQRAREPD A+G R + RERE G ERKRRRSD SE EG +S RH DR+ D+ AEDD S HRPSKKKSXXXXXXXXXXX R A ++ R+ GYAA AL Q D RS E R RSE E GR SE+RDAPR R R DS SPRR D GSEK ARRGS G D+ Q R G SRER AR G RDS GAS XX G LPGMEGY SA+SPP LE GG+G +S HDRQGLGSL+ L+AYGP LGR SPDG GG++ G RPRLA+ D Y PG+D RGG XXXXXXXXXXXXXXXXXXXXXXXXX Y R AD + RESSGRR D GS SSSNARGSR SPERGT + +RDG+ RRRPGSP+RDDSRG XXX X XXXXXXXXXXXXXXXX VSIIGGTPVLMPVAKMMEA
Sbjct: 1 MSGKR-ISLSAYKRNK-ALAGTPKKNERRLGFGESVSTREARAHELQLETQVIGRLDSLLKRCGRDPGSDQAISNWLCAEGLEGHAKKGLSRILCYVRVWSRTLRAEGVSPQDK---DKAEVKARAAFRACVCAINAVNSLSYRFAEKKKSPDGENELVKTAGEVLAGMMEAVLGAGSKPRRRGLHPTEHAQLSRMVDAWLQRGSVPLPSLESIGKQLLALDPG------GDPVVSPDRNGARAGK--GKTSNKRAAWVRVPAAAAIGDSLEG----KQSPGDVARLSPLRHHSSGGXXXXXXXXXGAAPQTEAERHASLESVLTDVLARNVAVPGAWWAQAFQGGGPFPQGPEGCWSLQYQRANEDPGHRRNQVTGLIGADGDHRF-----GAGSGVDLGSVKTEAADADGLDSDGGAPSTPSTVXXXXXXXXXXXXXXXEA-KTEEGKNLATISPAAAPATVGSVENGTVAPAAARAQKGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKEXXXXXXXXXXXXXXXXXMQRQEMIAASRXXXXXXXXXXXXGKEAKERADSLARRTK-------LXXXXXXXXXXXXXXXXXXXRGREKDRRRY----------QARGEAGEESRXXXXXXXXXXXXXXXXXXXXXXXXADGRGASRDNKERMSGRGKDEGRHSDAAGRLDKEDRERGGA---EGDRASGRRDKAEGRRHHDLVEGSRGGXXXXXXXXXXXXXXXXXXXXXXXXXS--------------------------SSQRAREPDFAAEGVRRKSDNSREREGG---ERKRRRSDLSESEGASISARHD--DRHPDDHAEDDHNSSSTHRPSKKKSXXXXXXXXXXXXXXXXXXXXRPGRAGSSESSRKRSRDFDAAPPLE---------------------------------GYAAVAL-QPDPLHRSTETRRHRSEQESGRTSSELRDAPRQ--SRSRADSGLSPRRDDGHGGSEKSARRGSNGGTGDSHAGQGRTGTSRERPSARRGAAPRDSVAGASFSGGNGXX-------GGALPGMEGYGSASSPPASLEFSGGGLGGKASERGRDAHDRQGLGSLKTLDAYGPGLGRDSSPDGXXXXXXXXGGKDGGVRPRLASSVDRYWPGVDSHGRGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSELDYLRVADMNGRESSGRRADIGSHPSSSSNARGSRWSPERGTQSTASRDGTNRRRPGSPARDDSRG----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSIIGGTPVLMPVAKMMEA 1227
BLAST of mRNA_L-elsbetiae_contig5715.14102.1 vs. uniprot
Match: A0A6H5JET6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET6_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.000e-20 Identity = 116/244 (47.54%), Postives = 140/244 (57.38%), Query Frame = 1
Query: 5041 DGGASALAVSRSP-SAKGSDSDRSALSGGGPADARGGVT-RRRSSGDLTPFLRKGGGSSRXKPGGEPDSPAD-PAADATAEPG-GRAGTTPSDDGPAVGDSAAAAAATTAV-TKPQRASVYSRLGAPPSEAKQD--TVKAAAGTPAPDSAAPPRGIASTWGSGGS--ADWASGRDGSGGXXXXXXXXXXXPAAAEVSDTTVVPIRRTK-NGSKEEARPVGGGAGRLMNAALSSSRD-GRSGKKG 5739
D +S +A +R P S + SDSD S +GG P + GV RRRSSGD+ FLRKGG R +PG EP SPA PAA+AT E G + + P P G +A +AV TK QRASV+SRLGAPPSEAK+D T +AA AAP RG+ WGS S AD + +G AA + PIRR K +G K + R VGGGAGRLMNAALSSSR+ GRS K+G
Sbjct: 260 DDASSPVAAARQPASLQRSDSDHS--TGGTPDASAAGVRHRRRSSGDIGSFLRKGG---RRRPG-EPASPAAAPAAEATVETAAGPSSSAPDPSSPVEGTPSAPDVGGSAVETKTQRASVFSRLGAPPSEAKKDGKTPPSAANPSGTPEAAPARGL-HAWGSCTSTAADGPASGEGK---------NAAGATAASDDSPALAPIRRVKGSGDKHDGRKVGGGAGRLMNAALSSSRESGRSAKRG 487 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5715.14102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5715.14102.1 >prot_L-elsbetiae_contig5715.14102.1 ID=prot_L-elsbetiae_contig5715.14102.1|Name=mRNA_L-elsbetiae_contig5715.14102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1913bp MSGKRTLSLSAYKKNKEALAVAPAKRERRLGFGESASTREARAHELQLETback to top mRNA from alignment at L-elsbetiae_contig5715:1233..10416+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5715.14102.1 ID=mRNA_L-elsbetiae_contig5715.14102.1|Name=mRNA_L-elsbetiae_contig5715.14102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9184bp|location=Sequence derived from alignment at L-elsbetiae_contig5715:1233..10416+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5715:1233..10416+ >mRNA_L-elsbetiae_contig5715.14102.1 ID=mRNA_L-elsbetiae_contig5715.14102.1|Name=mRNA_L-elsbetiae_contig5715.14102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=11478bp|location=Sequence derived from alignment at L-elsbetiae_contig5715:1233..10416+ (Laminarionema elsbetiae ELsaHSoW15)back to top |