mRNA_L-elsbetiae_contig5709.14093.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5709.14093.1
Unique NamemRNA_L-elsbetiae_contig5709.14093.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5709.14093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5709contigL-elsbetiae_contig5709:79..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size758
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5709.14093.1prot_L-elsbetiae_contig5709.14093.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5709 147..710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.783195-UTR-L-elsbetiae_contig5709:78..1461622816609.783195-UTR-L-elsbetiae_contig5709:78..146Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5709 79..146 +
1691683682.713466-UTR-L-elsbetiae_contig5709:78..1461691683682.713466-UTR-L-elsbetiae_contig5709:78..146Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5709 79..146 +
1622816609.808714-UTR-L-elsbetiae_contig5709:710..8361622816609.808714-UTR-L-elsbetiae_contig5709:710..836Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5709 711..836 +
1691683682.73689-UTR-L-elsbetiae_contig5709:710..8361691683682.73689-UTR-L-elsbetiae_contig5709:710..836Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5709 711..836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.7970624-CDS-L-elsbetiae_contig5709:146..7101622816609.7970624-CDS-L-elsbetiae_contig5709:146..710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5709 147..710 +
1691683682.7257433-CDS-L-elsbetiae_contig5709:146..7101691683682.7257433-CDS-L-elsbetiae_contig5709:146..710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5709 147..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5709.14093.1

>prot_L-elsbetiae_contig5709.14093.1 ID=prot_L-elsbetiae_contig5709.14093.1|Name=mRNA_L-elsbetiae_contig5709.14093.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MTSVWIAPLHHAPFGGVIALTTFSLINVNNAFFLRDNISPTTTRICSSVA
ATDARDDGQAAIASSTGRVGWARPEEWGIGSIGARADARCGGLERFSRAD
TRELHAAVGVSEGDDTAGGEDSSRLGVEGALVRAFEVLAGVRLFGFQKID
PLPVVQPRCGAQGVYSRVFLALRKQQGNKRSSSLALR*
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mRNA from alignment at L-elsbetiae_contig5709:79..836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5709.14093.1 ID=mRNA_L-elsbetiae_contig5709.14093.1|Name=mRNA_L-elsbetiae_contig5709.14093.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=758bp|location=Sequence derived from alignment at L-elsbetiae_contig5709:79..836+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGACGCCTGCCACACACCTCAACTCCTATCGCGGGTTTGAGCCCACG
ACCTTGGTGTTGAGGTGTATGACAAGCGTGTGGATTGCACCACTGCACCA
CGCTCCGTTTGGAGGGGTGATTGCACTGACCACTTTTAGCCTTATAAATG
TGAACAACGCATTTTTTTTAAGGGATAATATTTCCCCAACCACCACTAGA
ATATGTAGCAGCGTCGCAGCTACGGATGCAAGAGATGACGGGCAAGCTGC
CATTGCTTCTTCTACAGGCCGAGTCGGATGGGCAAGGCCGGAGGAATGGG
GCATCGGCTCCATCGGTGCAAGAGCCGATGCAAGATGCGGGGGGTTGGAG
CGTTTCTCCCGAGCAGACACCCGAGAGCTGCATGCAGCGGTGGGCGTCAG
TGAAGGCGACGACACTGCTGGAGGAGAGGACAGCAGTAGGCTGGGTGTGG
AAGGCGCGCTGGTGCGGGCTTTCGAGGTCCTTGCTGGGGTGCGTTTGTTT
GGATTCCAGAAAATCGACCCTCTCCCCGTCGTTCAGCCCCGCTGTGGAGC
GCAGGGGGTGTATTCACGAGTCTTCCTGGCCTTGCGGAAGCAGCAGGGGA
ATAAGAGAAGCAGCTCCCTGGCCTTGCGGTAGGAGTGAGGAGATACGAGG
GGAATACACACATAGTCTACACATATGTTCTATATCTACACACACACACA
CGTGCGTTTTGGGAAAAGATTACAGTCTCGCGAGTCGGATCCCATCTAGA
GAGTGTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5709:79..836+

>mRNA_L-elsbetiae_contig5709.14093.1 ID=mRNA_L-elsbetiae_contig5709.14093.1|Name=mRNA_L-elsbetiae_contig5709.14093.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig5709:79..836+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAGCGTGTGGATTGCACCACTGCACCACGCTCCGTTTGGAGGGGT
GATTGCACTGACCACTTTTAGCCTTATAAATGTGAACAACGCATTTTTTT
TAAGGGATAATATTTCCCCAACCACCACTAGAATATGTAGCAGCGTCGCA
GCTACGGATGCAAGAGATGACGGGCAAGCTGCCATTGCTTCTTCTACAGG
CCGAGTCGGATGGGCAAGGCCGGAGGAATGGGGCATCGGCTCCATCGGTG
CAAGAGCCGATGCAAGATGCGGGGGGTTGGAGCGTTTCTCCCGAGCAGAC
ACCCGAGAGCTGCATGCAGCGGTGGGCGTCAGTGAAGGCGACGACACTGC
TGGAGGAGAGGACAGCAGTAGGCTGGGTGTGGAAGGCGCGCTGGTGCGGG
CTTTCGAGGTCCTTGCTGGGGTGCGTTTGTTTGGATTCCAGAAAATCGAC
CCTCTCCCCGTCGTTCAGCCCCGCTGTGGAGCGCAGGGGGTGTATTCACG
AGTCTTCCTGGCCTTGCGGAAGCAGCAGGGGAATAAGAGAAGCAGCTCCC
TGGCCTTGCGGTAGATGACAAGCGTGTGGATTGCACCACTGCACCACGCT
CCGTTTGGAGGGGTGATTGCACTGACCACTTTTAGCCTTATAAATGTGAA
CAACGCATTTTTTTTAAGGGATAATATTTCCCCAACCACCACTAGAATAT
GTAGCAGCGTCGCAGCTACGGATGCAAGAGATGACGGGCAAGCTGCCATT
GCTTCTTCTACAGGCCGAGTCGGATGGGCAAGGCCGGAGGAATGGGGCAT
CGGCTCCATCGGTGCAAGAGCCGATGCAAGATGCGGGGGGTTGGAGCGTT
TCTCCCGAGCAGACACCCGAGAGCTGCATGCAGCGGTGGGCGTCAGTGAA
GGCGACGACACTGCTGGAGGAGAGGACAGCAGTAGGCTGGGTGTGGAAGG
CGCGCTGGTGCGGGCTTTCGAGGTCCTTGCTGGGGTGCGTTTGTTTGGAT
TCCAGAAAATCGACCCTCTCCCCGTCGTTCAGCCCCGCTGTGGAGCGCAG
GGGGTGTATTCACGAGTCTTCCTGGCCTTGCGGAAGCAGCAGGGGAATAA
GAGAAGCAGCTCCCTGGCCTTGCGGTAG
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