mRNA_L-elsbetiae_contig5707.14090.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5707.14090.1
Unique NamemRNA_L-elsbetiae_contig5707.14090.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5707.14090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5707contigL-elsbetiae_contig5707:7730..10448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size394
Cds size393
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5707.14090.1prot_L-elsbetiae_contig5707.14090.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5707 7730..10448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.5542984-CDS-L-elsbetiae_contig5707:7729..78111622816609.5542984-CDS-L-elsbetiae_contig5707:7729..7811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 7730..7811 -
1691683682.5550997-CDS-L-elsbetiae_contig5707:7729..78111691683682.5550997-CDS-L-elsbetiae_contig5707:7729..7811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 7730..7811 -
1622816609.566124-CDS-L-elsbetiae_contig5707:8207..83001622816609.566124-CDS-L-elsbetiae_contig5707:8207..8300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 8208..8300 -
1691683682.5667999-CDS-L-elsbetiae_contig5707:8207..83001691683682.5667999-CDS-L-elsbetiae_contig5707:8207..8300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 8208..8300 -
1622816609.5770302-CDS-L-elsbetiae_contig5707:8574..86411622816609.5770302-CDS-L-elsbetiae_contig5707:8574..8641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 8575..8641 -
1691683682.5770197-CDS-L-elsbetiae_contig5707:8574..86411691683682.5770197-CDS-L-elsbetiae_contig5707:8574..8641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 8575..8641 -
1622816609.5891142-CDS-L-elsbetiae_contig5707:8989..90211622816609.5891142-CDS-L-elsbetiae_contig5707:8989..9021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 8990..9021 -
1691683682.5870047-CDS-L-elsbetiae_contig5707:8989..90211691683682.5870047-CDS-L-elsbetiae_contig5707:8989..9021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 8990..9021 -
1622816609.5984583-CDS-L-elsbetiae_contig5707:9378..94351622816609.5984583-CDS-L-elsbetiae_contig5707:9378..9435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 9379..9435 -
1691683682.6001477-CDS-L-elsbetiae_contig5707:9378..94351691683682.6001477-CDS-L-elsbetiae_contig5707:9378..9435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 9379..9435 -
1622816609.6105876-CDS-L-elsbetiae_contig5707:10386..104481622816609.6105876-CDS-L-elsbetiae_contig5707:10386..10448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 10387..10448 -
1691683682.6116192-CDS-L-elsbetiae_contig5707:10386..104481691683682.6116192-CDS-L-elsbetiae_contig5707:10386..10448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5707 10387..10448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5707.14090.1

>prot_L-elsbetiae_contig5707.14090.1 ID=prot_L-elsbetiae_contig5707.14090.1|Name=mRNA_L-elsbetiae_contig5707.14090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
DNLLTTLPDTIFDPLTLLESLDLTENPELKCIPRVTSNGTNVEVDANAAQ
CDPVCLDPNGPDYRCIMQEGNTTNLGKCGLDESHEMQIKSCLEEAGVGNA
ILSLDLTDNRLKALPEDMFSSTLTTRFQNM*
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mRNA from alignment at L-elsbetiae_contig5707:7730..10448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5707.14090.1 ID=mRNA_L-elsbetiae_contig5707.14090.1|Name=mRNA_L-elsbetiae_contig5707.14090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2719bp|location=Sequence derived from alignment at L-elsbetiae_contig5707:7730..10448- (Laminarionema elsbetiae ELsaHSoW15)
GACAACCTCCTGACAACGCTGCCTGACACGATCTTCGATCCTCTCACTCT
CTTGGAATCGCTGTAAGTGCACTTCTGAAACTATATAGCTTAGGATATGC
ATATGGTTAAAACGACGCCCGTGGAACTCAGCAAGACTTCAGAACGACAA
TGAAGAGAGACGATATCTGGTGTGTCGCTTATTGTTTGCTCCTTTTCGCT
CAACAACCGACCTGGCGTTTCGTAGGTTGTCGGTGTCGTGAGGTGATTGG
CGATATCCCGCAAATAATGCCTTTCAAGCCCAACTATCATACTCTTCATG
AATTTAGGTTACTTTGATTAATCGACGTTCAATAAAACTACTACGTTCGG
TGAGGGTTGTGAATACGTTTGTTTTTATGCACTCGTCAACGTGAAGACGA
TCGTTTTGTGGATTTGAAGGGCCCAGGGTGTGTGTATACGCGGCTTGACG
GGAAATTGTGGGCAAGCTGTTATTATTGCTGTTCGTCTTTCGAGCTATGT
CTTATGCTTTTTGTTTGCGCAACTATAAGATACTCGCCAAACCTCTGGAC
CACCGGCATAGAATGGTTGTTGGCTCAAACGTTTAGGAGAAACTATTTTC
CGCCAAATGGGGTAGCAACCGAAGGCATAGTACGTGCCCTTCTTTGGCTG
CATTGTGACGTCGGGGCCCAAACCCTTTACCCTTATTCATACCATGAAAT
GGATGAATGCCAAACAGATTGTATATTGTATATACAGGCCGGTCTCAAAG
TCGTTGTTCACGTCCAATCCCGCTGCTGACCCTAAAAATCTAGCCTGCTA
TCAACTCGTACCGTGCCCGCGATATGGCATTTAAAGTGGTGAAACTGCAG
GCGGGTCGCTTTTTTCTTACTCACTGCGTGACTCTGTCACTGCGTTCTGA
GCTATGTAGCGGTTCCAAGGCGCGCAAATGTTTTCACACTTCAGAACGTG
GGTGATCCGTTTCCTCAAGCCACCTTTGTTTCGGCGTGTATCGTCCTCCC
AACATCTTCACAGAGACCTGACGGAGAACCCTGAACTGAAGTGCATCCCC
CGCGTCACATCAAACGGAACGTGAGAATTATTGTTGAATTGTTTTACCAT
GAATTAATTGGAAGATAACTAAGTACATCAAACTGTCACCACTCTAGGGC
ATATACTGCAAAAGGTACTGGTAATCTACATGATAAAGGTACTGGTAATC
TACATGATGCGCTTACGTTCCTGCATCGGGCTGGTCCAAGCCTTGCTGCA
TCGGGCTGGTCCCAAAGTTTATCGGGGCCAGACTGTTGCGCCTCACCAGT
GGGGTGGGCTAATCACGTTGGGCCGTCGTAGACCTTGTTTGCGCACGGTC
ATGCCATGTCATGTGGTCGTGCTTCACCTACATGCGTCAACTTCCGCACC
TTGTCGTTGGATTTATATGCGTTGCAGGAATGTCGAAGTCGACGCCAACG
CCGCACAGTGTGAGTGGTTGGTGGTCAGGGGTGTAGTGGTTATGTGCCCC
CGCCCCAGTAATGATACTCGGTACCTTGACTTGGGAGTACCGACGATAAG
GGGGACGCGAAGATTATGACACGCCGTAGCAACCGTTTATTATGTGGACT
ATCCAATATATTGTGTCGCTTGCTTGGTGCTATTATTGCTCACGTTCTTA
TTTTACTCAAGTGAGCATATATTTCACCTTTCATGCACTCGCTATCAAGA
TAACTTTTTTTGCGCATTTCGTGAATACATGAAATATCATTCTTTGTAGA
TGAGACCGTTTTTTTAGCACATTCAATTTATTCGAAGTTTCGTTCGTGCA
AGATTAGGTGATCCGGTCTGCTTGGACCCCAACGGCCCCGACTACCGATG
CATCATGCAAGAAGGGAACACGACGTGAGGTCCATGTTACATCTAAGCTG
CATGTGTACAGTTACCAACACAAACCCGTTGGCGAATGTTTTACTGGGCA
GTAGTTAGTTCGAAGGGAAGGAATGTAGATACTGGCGACGAAGGCAAAGC
TTTCCACGCTTTGTGGTTGGTCGTGCTGATTTACGTCGTGGGTAGTTATT
ACCAGGATCGGTTGAACTCACACTCTGTGGAAACCGGCTCGAACCTACTC
TTCCTGTTGGCTGAACCTCGTCTAACCCTAACCTGTGACCTGCTACAGCA
ATTTGGGTAAATGCGGCTTGGACGAATCCCACGAAATGCAGATCAAGTCG
TGCCTCGAAGAAGCGGGAGTAGGCAACGCCATACTTTCCCTGTAAGTGCA
CAAAGAAGGACAAATCACCCCCGCCACGTGTTCGATCCCACCAGAGTATC
TATTCCGAACGACCACGAAATAAGCGATATTCTAGCTTCCGAATGAATAT
ACGGCACCAGCTTTGGTTAGCAAGGATGGAATTGTATTCCTCACCATTTC
AAGTTTTCAATTTCTCTAAAGAGTTGCGATCGGAAACAGTTAAGCAGCAT
TGCGAGGTAAAAGGTTTCAGACGTTCAGCCATGTCAGTAAGTGCCTTGCC
ACAGTTGTGCATATTTTTGCAACGCGTTTGCATGTAGTTCGGGTTTGAGG
CCTTGGGTACTGGTAAGCCCTTCCAAGAAGTTGGTTGCGACTTTCTTACC
CTTGCCTGGCATGCATTGTTCCCCGACTATTCCACAGTGACCTCACCGAC
AACCGCCTCAAGGCGTTACCTGAAGATATGTTTTCTTCTACTCTCACCAC
CCGCTTTCAAAACATGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5707:7730..10448-

>mRNA_L-elsbetiae_contig5707.14090.1 ID=mRNA_L-elsbetiae_contig5707.14090.1|Name=mRNA_L-elsbetiae_contig5707.14090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig5707:7730..10448- (Laminarionema elsbetiae ELsaHSoW15)
GACAACCTCCTGACAACGCTGCCTGACACGATCTTCGATCCTCTCACTCT
CTTGGAATCGCTGACAACCTCCTGACAACGCTGCCTGACACGATCTTCGA
TCCTCTCACTCTCTTGGAATCGCTAGACCTGACGGAGAACCCTGAACTGA
AGTGCATCCCCCGCGTCACATCAAACGGAACAGACCTGACGGAGAACCCT
GAACTGAAGTGCATCCCCCGCGTCACATCAAACGGAACGAATGTCGAAGT
CGACGCCAACGCCGCACAGTGAATGTCGAAGTCGACGCCAACGCCGCACA
GTGTGATCCGGTCTGCTTGGACCCCAACGGCCCCGACTACCGATGCATCA
TGCAAGAAGGGAACACGACGTGATCCGGTCTGCTTGGACCCCAACGGCCC
CGACTACCGATGCATCATGCAAGAAGGGAACACGACCAATTTGGGTAAAT
GCGGCTTGGACGAATCCCACGAAATGCAGATCAAGTCGTGCCTCGAAGAA
GCGGGAGTAGGCAACGCCATACTTTCCCTCAATTTGGGTAAATGCGGCTT
GGACGAATCCCACGAAATGCAGATCAAGTCGTGCCTCGAAGAAGCGGGAG
TAGGCAACGCCATACTTTCCCTTGACCTCACCGACAACCGCCTCAAGGCG
TTACCTGAAGATATGTTTTCTTCTACTCTCACCACCCGCTTTCAAAACAT
GTAATGACCTCACCGACAACCGCCTCAAGGCGTTACCTGAAGATATGTTT
TCTTCTACTCTCACCACCCGCTTTCAAAACATGTAA
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