mRNA_L-elsbetiae_contig57.14078.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig57.14078.1
Unique NamemRNA_L-elsbetiae_contig57.14078.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig57.14078.1 vs. uniprot
Match: A0A6H5K0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.700e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = -1 
Query:    4 GVSGGTATASQTSSPPPSIMSSDDVSVSSYGHPVTVLPGSPNNMRFDGRPPPSLAKIRLEAVRSPVVRRNS 216
            GVSGGT+  +      PSIMSSDDVSVSSYGHPVTVLPGSPNN+ F+GRPPPSLAKIRLEAVRSP VRR +
Sbjct:  876 GVSGGTSL-TXXXXXXPSIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPAVRRGN 945
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BLAST of mRNA_L-elsbetiae_contig57.14078.1 vs. uniprot
Match: D8LF04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF04_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.900e-21
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = -1 
Query:    4 IMSSDDVSVSSYGHPVTVLPGSPNNMRFDGRPPPSLAKIRLEAVRSPVVRRNS 162
            IMSSDDVSVSSYGHPVTVLPGSPNN+ F+GRPPPSLAKIRLEAVRSP VRR S
Sbjct:  563 IMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPAVRRGS 615
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig57.14078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0J1_9PHAE1.700e-2277.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF04_ECTSI6.900e-2190.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig57contigL-elsbetiae_contig57:21168..21481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816608.3271184-CDS-L-elsbetiae_contig57:21167..214791622816608.3271184-CDS-L-elsbetiae_contig57:21167..21479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 21168..21479 +
1691683681.6822007-CDS-L-elsbetiae_contig57:21167..214791691683681.6822007-CDS-L-elsbetiae_contig57:21167..21479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 21168..21479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig57.14078.1prot_L-elsbetiae_contig57.14078.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig57 21168..21479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig57.14078.1

>prot_L-elsbetiae_contig57.14078.1 ID=prot_L-elsbetiae_contig57.14078.1|Name=mRNA_L-elsbetiae_contig57.14078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
AAVAPHYRRAHGLQPDLGQRRRRAAVEPHVVRRAGQHGDRVPVRRDRHVV
GGHDGRGRGGCLARSRGAPRHAHEGRASAVNVPVFVSVVITPASTSSSEP
AQAR
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mRNA from alignment at L-elsbetiae_contig57:21168..21481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig57.14078.1 ID=mRNA_L-elsbetiae_contig57.14078.1|Name=mRNA_L-elsbetiae_contig57.14078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=314bp|location=Sequence derived from alignment at L-elsbetiae_contig57:21168..21481+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGTTGCGCCGCACTACCGGCGAGCGCACGGCCTCCAGCCTGATCT
TGGCCAGCGACGGCGGCGGGCGGCCGTCGAACCTCATGTTGTTCGGCGAG
CCGGGCAGCACGGTGACCGGGTGCCCGTACGACGAGACCGACACGTCGTC
GGAGGACATGATGGACGGGGGCGGGGAGGATGTCTGGCTCGCAGTCGCGG
TGCCCCCCGACACGCCCATGAAGGCCGAGCCTCCGCAGTCAACGTCCCCG
TCTTCGTCTCCGTCGTCATCACGCCCGCCTCCACTTCCTCCTCGGAACCC
GCGCAGGCTCGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig57:21168..21481+

>mRNA_L-elsbetiae_contig57.14078.1 ID=mRNA_L-elsbetiae_contig57.14078.1|Name=mRNA_L-elsbetiae_contig57.14078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig57:21168..21481+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGTTGCGCCGCACTACCGGCGAGCGCACGGCCTCCAGCCTGATCT
TGGCCAGCGACGGCGGCGGGCGGCCGTCGAACCTCATGTTGTTCGGCGAG
CCGGGCAGCACGGTGACCGGGTGCCCGTACGACGAGACCGACACGTCGTC
GGAGGACATGATGGACGGGGGCGGGGAGGATGTCTGGCTCGCAGTCGCGG
TGCCCCCCGACACGCCCATGAAGGCCGAGCCTCCGCAGTCAACGTCCCCG
TCTTCGTCTCCGTCGTCATCACGCCCGCCTCCACTTCCTCCTCGGAACCC
GCGCAGGCTCGAGCTGCTGTTGCGCCGCACTACCGGCGAGCGCACGGCCT
CCAGCCTGATCTTGGCCAGCGACGGCGGCGGGCGGCCGTCGAACCTCATG
TTGTTCGGCGAGCCGGGCAGCACGGTGACCGGGTGCCCGTACGACGAGAC
CGACACGTCGTCGGAGGACATGATGGACGGGGGCGGGGAGGATGTCTGGC
TCGCAGTCGCGGTGCCCCCCGACACGCCCATGAAGGCCGAGCCTCCGCAG
TCAACGTCCCCGTCTTCGTCTCCGTCGTCATCACGCCCGCCTCCACTTCC
TCCTCGGAACCCGCGCAGGCTCGA
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