mRNA_L-elsbetiae_contig5699.14076.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5699.14076.1
Unique NamemRNA_L-elsbetiae_contig5699.14076.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5699.14076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5699contigL-elsbetiae_contig5699:6638..7160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size523
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5699.14076.1prot_L-elsbetiae_contig5699.14076.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5699 6692..7015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816608.0818963-UTR-L-elsbetiae_contig5699:6637..66911622816608.0818963-UTR-L-elsbetiae_contig5699:6637..6691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5699 6638..6691 +
1691683681.5209682-UTR-L-elsbetiae_contig5699:6637..66911691683681.5209682-UTR-L-elsbetiae_contig5699:6637..6691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5699 6638..6691 +
1622816608.1041863-UTR-L-elsbetiae_contig5699:7015..71601622816608.1041863-UTR-L-elsbetiae_contig5699:7015..7160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5699 7016..7160 +
1691683681.5485911-UTR-L-elsbetiae_contig5699:7015..71601691683681.5485911-UTR-L-elsbetiae_contig5699:7015..7160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5699 7016..7160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816608.0943284-CDS-L-elsbetiae_contig5699:6691..70151622816608.0943284-CDS-L-elsbetiae_contig5699:6691..7015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5699 6692..7015 +
1691683681.5360594-CDS-L-elsbetiae_contig5699:6691..70151691683681.5360594-CDS-L-elsbetiae_contig5699:6691..7015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5699 6692..7015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5699.14076.1

>prot_L-elsbetiae_contig5699.14076.1 ID=prot_L-elsbetiae_contig5699.14076.1|Name=mRNA_L-elsbetiae_contig5699.14076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MNQHQTSLPHSNGEREHAPNGVTATEQIKSSTLRSSQERRASTGINTQAT
FIHATGGGKRKDRQNTERLRRHTPFSCRPGQVPLEGSQQTRCCRPDVTCS
EMIFVAP*
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mRNA from alignment at L-elsbetiae_contig5699:6638..7160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5699.14076.1 ID=mRNA_L-elsbetiae_contig5699.14076.1|Name=mRNA_L-elsbetiae_contig5699.14076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=523bp|location=Sequence derived from alignment at L-elsbetiae_contig5699:6638..7160+ (Laminarionema elsbetiae ELsaHSoW15)
AAACTTCGTGTATATATAAAACCTACCATACACCAGCAGTCCAACACCAC
ATATATGAATCAGCATCAGACAAGTCTTCCACACTCTAACGGCGAGAGAG
AACACGCACCTAACGGTGTAACTGCTACGGAGCAAATAAAATCCAGTACA
CTTCGATCAAGTCAAGAAAGACGTGCATCTACAGGTATCAACACACAAGC
AACGTTTATACACGCAACAGGTGGCGGAAAGAGGAAGGATCGCCAGAATA
CTGAGAGACTTAGGCGACACACGCCTTTTTCATGTCGGCCTGGCCAGGTC
CCTCTGGAGGGGTCTCAACAGACAAGATGTTGCCGGCCAGACGTTACCTG
CAGCGAGATGATATTTGTCGCCCCATGAAAATCCACTATATCTCTCATAC
ATAAATATTTGATCTTGCAGGTACTACAAAATACAAATAAATACAATGGC
AGACGACAGAGGTAGGTGTTCACGCCACCCCCGCACCCCCCCTCCTCTCC
CTCACATGACAACAATCACAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5699:6638..7160+

>mRNA_L-elsbetiae_contig5699.14076.1 ID=mRNA_L-elsbetiae_contig5699.14076.1|Name=mRNA_L-elsbetiae_contig5699.14076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5699:6638..7160+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCAGCATCAGACAAGTCTTCCACACTCTAACGGCGAGAGAGAACA
CGCACCTAACGGTGTAACTGCTACGGAGCAAATAAAATCCAGTACACTTC
GATCAAGTCAAGAAAGACGTGCATCTACAGGTATCAACACACAAGCAACG
TTTATACACGCAACAGGTGGCGGAAAGAGGAAGGATCGCCAGAATACTGA
GAGACTTAGGCGACACACGCCTTTTTCATGTCGGCCTGGCCAGGTCCCTC
TGGAGGGGTCTCAACAGACAAGATGTTGCCGGCCAGACGTTACCTGCAGC
GAGATGATATTTGTCGCCCCATGAATGAATCAGCATCAGACAAGTCTTCC
ACACTCTAACGGCGAGAGAGAACACGCACCTAACGGTGTAACTGCTACGG
AGCAAATAAAATCCAGTACACTTCGATCAAGTCAAGAAAGACGTGCATCT
ACAGGTATCAACACACAAGCAACGTTTATACACGCAACAGGTGGCGGAAA
GAGGAAGGATCGCCAGAATACTGAGAGACTTAGGCGACACACGCCTTTTT
CATGTCGGCCTGGCCAGGTCCCTCTGGAGGGGTCTCAACAGACAAGATGT
TGCCGGCCAGACGTTACCTGCAGCGAGATGATATTTGTCGCCCCATGA
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