mRNA_L-elsbetiae_contig5698.14073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5698.14073.1
Unique NamemRNA_L-elsbetiae_contig5698.14073.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5698.14073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5698contigL-elsbetiae_contig5698:5182..5564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.9280713-CDS-L-elsbetiae_contig5698:5181..55621622816607.9280713-CDS-L-elsbetiae_contig5698:5181..5562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5698 5182..5562 +
1691683681.4078248-CDS-L-elsbetiae_contig5698:5181..55621691683681.4078248-CDS-L-elsbetiae_contig5698:5181..5562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5698 5182..5562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5698.14073.1prot_L-elsbetiae_contig5698.14073.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5698 5182..5562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5698.14073.1

>prot_L-elsbetiae_contig5698.14073.1 ID=prot_L-elsbetiae_contig5698.14073.1|Name=mRNA_L-elsbetiae_contig5698.14073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
LWKSEKLRKECKPPSFKIFFSGNFQTLFLSFLCGSSEVGNLFQENKAPRV
LNPPVTVRCFNASTPYCCCCCAFPACSSRSRLDYTPARPENTHLTIPSFA
LTTNPSRFSPSVTCAQPFHFLSDRPFS
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mRNA from alignment at L-elsbetiae_contig5698:5182..5564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5698.14073.1 ID=mRNA_L-elsbetiae_contig5698.14073.1|Name=mRNA_L-elsbetiae_contig5698.14073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=383bp|location=Sequence derived from alignment at L-elsbetiae_contig5698:5182..5564+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTGGAAATCTGAAAAATTGCGGAAAGAGTGTAAGCCACCGTCGTTCAA
AATCTTTTTCTCTGGGAATTTTCAAACGCTGTTCCTCTCGTTTCTCTGCG
GTTCCTCCGAAGTTGGAAATTTGTTTCAAGAAAACAAAGCGCCGCGCGTT
TTAAACCCCCCGGTCACTGTCCGCTGCTTCAACGCTTCAACACCATACTG
TTGTTGCTGTTGTGCGTTCCCGGCGTGTTCCTCTCGAAGCCGACTCGACT
ATACCCCGGCTCGGCCTGAAAATACCCACCTTACTATTCCTTCATTCGCG
TTAACCACCAACCCCTCCCGATTCTCCCCGTCTGTTACTTGTGCACAACC
ATTTCATTTTTTATCCGACAGACCGTTCAGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5698:5182..5564+

>mRNA_L-elsbetiae_contig5698.14073.1 ID=mRNA_L-elsbetiae_contig5698.14073.1|Name=mRNA_L-elsbetiae_contig5698.14073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig5698:5182..5564+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTGGAAATCTGAAAAATTGCGGAAAGAGTGTAAGCCACCGTCGTTCAA
AATCTTTTTCTCTGGGAATTTTCAAACGCTGTTCCTCTCGTTTCTCTGCG
GTTCCTCCGAAGTTGGAAATTTGTTTCAAGAAAACAAAGCGCCGCGCGTT
TTAAACCCCCCGGTCACTGTCCGCTGCTTCAACGCTTCAACACCATACTG
TTGTTGCTGTTGTGCGTTCCCGGCGTGTTCCTCTCGAAGCCGACTCGACT
ATACCCCGGCTCGGCCTGAAAATACCCACCTTACTATTCCTTCATTCGCG
TTAACCACCAACCCCTCCCGATTCTCCCCGTCTGTTACTTGTGCACAACC
ATTTCATTTTTTATCCGACAGACCGTTCAGCCTTTGGAAATCTGAAAAAT
TGCGGAAAGAGTGTAAGCCACCGTCGTTCAAAATCTTTTTCTCTGGGAAT
TTTCAAACGCTGTTCCTCTCGTTTCTCTGCGGTTCCTCCGAAGTTGGAAA
TTTGTTTCAAGAAAACAAAGCGCCGCGCGTTTTAAACCCCCCGGTCACTG
TCCGCTGCTTCAACGCTTCAACACCATACTGTTGTTGCTGTTGTGCGTTC
CCGGCGTGTTCCTCTCGAAGCCGACTCGACTATACCCCGGCTCGGCCTGA
AAATACCCACCTTACTATTCCTTCATTCGCGTTAACCACCAACCCCTCCC
GATTCTCCCCGTCTGTTACTTGTGCACAACCATTTCATTTTTTATCCGAC
AGACCGTTCAGC
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