mRNA_L-elsbetiae_contig5684.14051.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5684.14051.1
Unique NamemRNA_L-elsbetiae_contig5684.14051.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5684.14051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5684contigL-elsbetiae_contig5684:3232..3904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size276
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5684.14051.1prot_L-elsbetiae_contig5684.14051.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5684 3343..3904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.167189-UTR-L-elsbetiae_contig5684:3231..33421622816606.167189-UTR-L-elsbetiae_contig5684:3231..3342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5684 3232..3342 +
1691683680.1919732-UTR-L-elsbetiae_contig5684:3231..33421691683680.1919732-UTR-L-elsbetiae_contig5684:3231..3342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5684 3232..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.1864352-CDS-L-elsbetiae_contig5684:3342..33821622816606.1864352-CDS-L-elsbetiae_contig5684:3342..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5684 3343..3382 +
1691683680.20399-CDS-L-elsbetiae_contig5684:3342..33821691683680.20399-CDS-L-elsbetiae_contig5684:3342..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5684 3343..3382 +
1622816606.1988268-CDS-L-elsbetiae_contig5684:3779..39041622816606.1988268-CDS-L-elsbetiae_contig5684:3779..3904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5684 3780..3904 +
1691683680.2158515-CDS-L-elsbetiae_contig5684:3779..39041691683680.2158515-CDS-L-elsbetiae_contig5684:3779..3904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5684 3780..3904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5684.14051.1

>prot_L-elsbetiae_contig5684.14051.1 ID=prot_L-elsbetiae_contig5684.14051.1|Name=mRNA_L-elsbetiae_contig5684.14051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MLRMHNIRRAQRGGHAVHSRQSRLWRQSERLHQGPSTRDGSLSTRLIGLL
LSPP*
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mRNA from alignment at L-elsbetiae_contig5684:3232..3904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5684.14051.1 ID=mRNA_L-elsbetiae_contig5684.14051.1|Name=mRNA_L-elsbetiae_contig5684.14051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=673bp|location=Sequence derived from alignment at L-elsbetiae_contig5684:3232..3904+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGCACAGGTGAATCAGAGTTGAAGAAGATAGCGATGAAGATAGCGATC
GCCCTCGGGGGGCACAGCATTTCAGCAGCACTCGCCGTGGGAGTCTTCGC
CAACTACGAAGATGCTTAGAATGCATAATATACGGAGGGCTCAGCGCGGC
GGTGAGGGCCTCTTACCCACCACATGCCCTTTATTTAGGTCGGGTACTCG
GACTACTTCGTATGTAGTTGAGGTGAATGGGTGCCCGCCCTCTTGGTTGC
GGCCGCAACAAAATGTACCCCGGTAGATCTTTGATGTTCACCGAAAATCC
AAGCAGTCCCGTTGTTTTCGTATCCGTGACAAGTACGTAGTTCGCAGATG
TGGAGAGTGTATATGGTAGGGCGACTCACAACTATTTCGGCGGAGGCCGG
TTCCTCGGGATTTTTCCAAAGGAACAAGAAGGCGGGTGTCGTGCGGTTCC
TTCGACAGCAGCACCGGTGCCTCCGTATTCGAAACCAACGAACAACACAT
AGGAACCCTCGAAATGATTTCACCCCTTAAACATTTGCCACATACAAGGT
CATGCCGTCCACTCACGTCAGAGCCGTCTTTGGCGGCAAAGTGAGCGACT
GCATCAAGGCCCATCGACGCGCGACGGATCTCTCTCCACGCGACTTATTG
GTTTACTTCTCTCTCCACCCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5684:3232..3904+

>mRNA_L-elsbetiae_contig5684.14051.1 ID=mRNA_L-elsbetiae_contig5684.14051.1|Name=mRNA_L-elsbetiae_contig5684.14051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig5684:3232..3904+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTAGAATGCATAATATACGGAGGGCTCAGCGCGGCGATGCTTAGAA
TGCATAATATACGGAGGGCTCAGCGCGGCGGTCATGCCGTCCACTCACGT
CAGAGCCGTCTTTGGCGGCAAAGTGAGCGACTGCATCAAGGCCCATCGAC
GCGCGACGGATCTCTCTCCACGCGACTTATTGGTTTACTTCTCTCTCCAC
CCTAGGTCATGCCGTCCACTCACGTCAGAGCCGTCTTTGGCGGCAAAGTG
AGCGACTGCATCAAGGCCCATCGACGCGCGACGGATCTCTCTCCACGCGA
CTTATTGGTTTACTTCTCTCTCCACCCTAG
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