mRNA_L-elsbetiae_contig5679.14041.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5679.14041.1
Unique NamemRNA_L-elsbetiae_contig5679.14041.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5679.14041.1 vs. uniprot
Match: D7G7V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V8_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.770e-35
Identity = 86/138 (62.32%), Postives = 93/138 (67.39%), Query Frame = 1 
Query:   64 MSLLGLAXXXXXXXXXXXX---NTRRSPQGENSSXXXXXXXXXXXXXXXXXXNLIEENPDSQQGESVDEEAGASREARAGVLRASSFDAPAPPSKESRQFFMPLPSPLVRLDNASPSASSPFIS-EPPDGAAAGADTE 465
            MSLLGLA               N RRSPQ EN+S                  N +EEN DS+ GESVDEEAGA+RE R G+LRASSFDAPAPPSKESRQFFMPLPSPLV+LDNASPSASSPFI+ EPPDG A GA  E
Sbjct:    1 MSLLGLAGYDTDGSDGDEGANNNQRRSPQAENTSGAQEPAAGASGSSNAN--NALEENSDSRLGESVDEEAGANRELRTGILRASSFDAPAPPSKESRQFFMPLPSPLVKLDNASPSASSPFITYEPPDGTAGGAGAE 136
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BLAST of mRNA_L-elsbetiae_contig5679.14041.1 vs. uniprot
Match: A0A6H5L310_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L310_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.230e-30
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:  211 NLIEENPDSQQGESVDEEAGASREARAGVLRASSFDAPAPPSKESRQFFMPLPSPLVRLDNASPSASSPFIS-EPPDGAAAGADTE 465
            N +EEN DS+ GE VDEE G +RE RAG+LRASSFDAPAPPSKESRQFFMPLPSPLV+LDNASPSASSPF + EPPDGA  GA  E
Sbjct:   51 NALEENSDSRLGELVDEEEGTNRELRAGILRASSFDAPAPPSKESRQFFMPLPSPLVKLDNASPSASSPFTTYEPPDGATGGAGEE 136
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5679.14041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7V8_ECTSI1.770e-3562.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L310_9PHAE8.230e-3077.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5679contigL-elsbetiae_contig5679:10901..11367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D7G7V8
Preferred nameSAP30BP
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045111,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990904
EggNOG free text desc.positive regulation of cell death
EggNOG OGsKOG2959@1,KOG2959@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSAP30-binding protein
Ec32 orthologEc-06_000140.1
Exons1
Model size468
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.820134-CDS-L-elsbetiae_contig5679:10900..113651622816604.820134-CDS-L-elsbetiae_contig5679:10900..11365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5679 10901..11365 +
1691683679.1587195-CDS-L-elsbetiae_contig5679:10900..113651691683679.1587195-CDS-L-elsbetiae_contig5679:10900..11365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5679 10901..11365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5679.14041.1prot_L-elsbetiae_contig5679.14041.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5679 10901..11365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5679.14041.1

>prot_L-elsbetiae_contig5679.14041.1 ID=prot_L-elsbetiae_contig5679.14041.1|Name=mRNA_L-elsbetiae_contig5679.14041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
EQTRAWETDNQEGHTRQNIEPMSLLGLAGYGSDGSDGDEGNTRRSPQGEN
SSAAQEGGGSSSSNNNNNNSNLIEENPDSQQGESVDEEAGASREARAGVL
RASSFDAPAPPSKESRQFFMPLPSPLVRLDNASPSASSPFISEPPDGAAA
GADTE
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mRNA from alignment at L-elsbetiae_contig5679:10901..11367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5679.14041.1 ID=mRNA_L-elsbetiae_contig5679.14041.1|Name=mRNA_L-elsbetiae_contig5679.14041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=467bp|location=Sequence derived from alignment at L-elsbetiae_contig5679:10901..11367+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCAGACACGCGCGTGGGAAACAGACAACCAAGAGGGACACACACGGCA
AAATATCGAGCCCATGTCGCTGCTGGGCCTTGCTGGTTACGGCTCCGATG
GAAGCGATGGAGACGAAGGCAACACTCGTCGCTCCCCTCAGGGCGAAAAC
AGCTCCGCCGCCCAAGAGGGAGGTGGCAGCAGTAGCAGCAACAACAACAA
CAACAACAGCAACCTGATCGAGGAAAACCCTGACAGCCAACAAGGAGAAT
CAGTAGACGAGGAAGCAGGCGCCAGTCGAGAAGCACGAGCAGGGGTTTTG
AGGGCGTCGTCATTCGATGCTCCAGCCCCCCCTTCCAAGGAGTCCAGGCA
GTTCTTCATGCCCCTGCCTTCTCCGTTGGTGCGGCTCGACAACGCATCTC
CCAGCGCTAGCTCCCCTTTCATCAGCGAGCCACCAGACGGCGCTGCGGCG
GGAGCTGATACAGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5679:10901..11367+

>mRNA_L-elsbetiae_contig5679.14041.1 ID=mRNA_L-elsbetiae_contig5679.14041.1|Name=mRNA_L-elsbetiae_contig5679.14041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig5679:10901..11367+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCAGACACGCGCGTGGGAAACAGACAACCAAGAGGGACACACACGGCA
AAATATCGAGCCCATGTCGCTGCTGGGCCTTGCTGGTTACGGCTCCGATG
GAAGCGATGGAGACGAAGGCAACACTCGTCGCTCCCCTCAGGGCGAAAAC
AGCTCCGCCGCCCAAGAGGGAGGTGGCAGCAGTAGCAGCAACAACAACAA
CAACAACAGCAACCTGATCGAGGAAAACCCTGACAGCCAACAAGGAGAAT
CAGTAGACGAGGAAGCAGGCGCCAGTCGAGAAGCACGAGCAGGGGTTTTG
AGGGCGTCGTCATTCGATGCTCCAGCCCCCCCTTCCAAGGAGTCCAGGCA
GTTCTTCATGCCCCTGCCTTCTCCGTTGGTGCGGCTCGACAACGCATCTC
CCAGCGCTAGCTCCCCTTTCATCAGCGAGCCACCAGACGGCGCTGCGGCG
GGAGCTGATACAGAGGAGCAGACACGCGCGTGGGAAACAGACAACCAAGA
GGGACACACACGGCAAAATATCGAGCCCATGTCGCTGCTGGGCCTTGCTG
GTTACGGCTCCGATGGAAGCGATGGAGACGAAGGCAACACTCGTCGCTCC
CCTCAGGGCGAAAACAGCTCCGCCGCCCAAGAGGGAGGTGGCAGCAGTAG
CAGCAACAACAACAACAACAACAGCAACCTGATCGAGGAAAACCCTGACA
GCCAACAAGGAGAATCAGTAGACGAGGAAGCAGGCGCCAGTCGAGAAGCA
CGAGCAGGGGTTTTGAGGGCGTCGTCATTCGATGCTCCAGCCCCCCCTTC
CAAGGAGTCCAGGCAGTTCTTCATGCCCCTGCCTTCTCCGTTGGTGCGGC
TCGACAACGCATCTCCCAGCGCTAGCTCCCCTTTCATCAGCGAGCCACCA
GACGGCGCTGCGGCGGGAGCTGATACAGAG
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