mRNA_L-elsbetiae_contig5674.14035.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5674.14035.1
Unique NamemRNA_L-elsbetiae_contig5674.14035.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5674.14035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5674contigL-elsbetiae_contig5674:6571..7708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score73.2
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog109760.SPPG_09416T0
Preferred nameTMEM107
Hectar predicted targeting categorysignal anchor
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016043,GO:0021532,GO:0021915,GO:0022607,GO:0030030,GO:0030031,GO:0030326,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035869,GO:0036038,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051641,GO:0060173,GO:0060271,GO:0060429,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904491,GO:1905515
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGs2AP86@1,2RZG7@2759,3A1JP@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTransmembrane protein 107
Ec32 orthologEc-01_011890.1
Exons3
Model size466
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5674.14035.1prot_L-elsbetiae_contig5674.14035.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5674 6571..7683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.2934198-CDS-L-elsbetiae_contig5674:6570..66431622816604.2934198-CDS-L-elsbetiae_contig5674:6570..6643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5674 6571..6643 -
1691683678.776529-CDS-L-elsbetiae_contig5674:6570..66431691683678.776529-CDS-L-elsbetiae_contig5674:6570..6643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5674 6571..6643 -
1622816604.307067-CDS-L-elsbetiae_contig5674:7103..73011622816604.307067-CDS-L-elsbetiae_contig5674:7103..7301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5674 7104..7301 -
1691683678.7909985-CDS-L-elsbetiae_contig5674:7103..73011691683678.7909985-CDS-L-elsbetiae_contig5674:7103..7301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5674 7104..7301 -
1622816604.3200095-CDS-L-elsbetiae_contig5674:7513..76831622816604.3200095-CDS-L-elsbetiae_contig5674:7513..7683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5674 7514..7683 -
1691683678.8044403-CDS-L-elsbetiae_contig5674:7513..76831691683678.8044403-CDS-L-elsbetiae_contig5674:7513..7683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5674 7514..7683 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.33225-UTR-L-elsbetiae_contig5674:7683..77081622816604.33225-UTR-L-elsbetiae_contig5674:7683..7708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5674 7684..7708 -
1691683678.8140988-UTR-L-elsbetiae_contig5674:7683..77081691683678.8140988-UTR-L-elsbetiae_contig5674:7683..7708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5674 7684..7708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5674.14035.1

>prot_L-elsbetiae_contig5674.14035.1 ID=prot_L-elsbetiae_contig5674.14035.1|Name=mRNA_L-elsbetiae_contig5674.14035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MVDVLIKLVIGRFVALLWHGIATILLIFGKTPLVQIEVDPRLAFDLRNEQ
FESIDTWITALLALAIICMALEVAGLLSGYTIHQKNANIVSALAHLGGFL
STLSMVLNGWTVRVYPYVFTICSFLPAGFDVLWWTSQTFARKLGPR*
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mRNA from alignment at L-elsbetiae_contig5674:6571..7708-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5674.14035.1 ID=mRNA_L-elsbetiae_contig5674.14035.1|Name=mRNA_L-elsbetiae_contig5674.14035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1138bp|location=Sequence derived from alignment at L-elsbetiae_contig5674:6571..7708- (Laminarionema elsbetiae ELsaHSoW15)
GGCTTTTTCTTGCAGCTATCAAAGCATGGTTGATGTGCTGATAAAACTTG
TTATTGGCAGGTTTGTGGCCCTTTTGTGGCATGGTATCGCCACAATCCTG
CTCATCTTCGGGAAAACGCCGTTGGTCCAGATAGAGGTGGATCCAAGGTT
AGCCTTCGATCTCCGCAACGAGCAGTTCGAGTCCATCGACACCTGGTGGG
TTAGCACTACTGTGCGACACACCTGTTACAGTAGTGTGATTTCGTTTTTG
GTTGTTTTTTGGTCGATGTCTCGTGGGTGATGGTTGTACATTTTTGAAAT
GGGATGTTTTTGTAGCAACTTTGACGCATCCTTTCTCAGATCCCCTTGGA
TCTGTGTTTGAAATGTCCCCATATACCCGTTTGTCAAAAACCTTGCAATT
TTCGCAGGATAACTGCTCTTCTGGCGCTTGCGATAATATGCATGGCCTTG
GAGGTTGCTGGGCTCCTCTCGGGGTATACGATTCACCAGAAAAATGCCAA
CATCGTGTCAGCTCTTGCGCATCTAGGAGGCTTCCTGTCAACCCTGTCGA
TGGTGCTGAACGGGTGGACCGTTCGTGTGTACCCATATGTGTTTACAATA
TGCAGGTGCGTCAGAGCCTGGCCGCAGAGAATGGCACTGACCCTCTTTAT
TGCTCCGCGGCTGCCGACTATGGAAGACCGAGTCTTTATTTAGACCAAAT
TCCCTACATCGCATACCACCTTGCTCCTTCATAAAACCCAAGGCGGGTGG
GCAGCGGGTAGCAATGCCCTCAGGATTGATGACGCTGGAAAAGCATCCAG
GTTAATGGAAAACAAGGAGTCTCCTACTAAGTCTGTTTTCTCCCTCGAGG
AATCGCCCTATTATCTTTTTCGCTGCAATATACCGCCAAGACATCTTGTG
AGCCGAAGAAACCTTTCAGACTTTCGATTTGCTTGGTTTGTGTAGCGGGA
ATATTTAGCCCGGAAGAGAGAACCGCGTGTGCTGGAACTTAGTTCAAGAA
TTTTCACAAACTTGATCATTCTATCCCTCTCCACTGTTCTCCCAACCCTG
CCGCGTACTCGCCAGCTTCTTGCCAGCTGGTTTCGACGTCTTGTGGTGGA
CTTCCCAGACGTTCGCACGAAAACTCGGGCCAAGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5674:6571..7708-

>mRNA_L-elsbetiae_contig5674.14035.1 ID=mRNA_L-elsbetiae_contig5674.14035.1|Name=mRNA_L-elsbetiae_contig5674.14035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig5674:6571..7708- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGATGTGCTGATAAAACTTGTTATTGGCAGGTTTGTGGCCCTTTT
GTGGCATGGTATCGCCACAATCCTGCTCATCTTCGGGAAAACGCCGTTGG
TCCAGATAGAGGTGGATCCAAGGTTAGCCTTCGATCTCCGCAACGAGCAG
TTCGAGTCCATCGACACCTGATGGTTGATGTGCTGATAAAACTTGTTATT
GGCAGGTTTGTGGCCCTTTTGTGGCATGGTATCGCCACAATCCTGCTCAT
CTTCGGGAAAACGCCGTTGGTCCAGATAGAGGTGGATCCAAGGTTAGCCT
TCGATCTCCGCAACGAGCAGTTCGAGTCCATCGACACCTGGATAACTGCT
CTTCTGGCGCTTGCGATAATATGCATGGCCTTGGAGGTTGCTGGGCTCCT
CTCGGGGTATACGATTCACCAGAAAAATGCCAACATCGTGTCAGCTCTTG
CGCATCTAGGAGGCTTCCTGTCAACCCTGTCGATGGTGCTGAACGGGTGG
ACCGTTCGTGTGTACCCATATGTGTTTACAATATGCAGGATAACTGCTCT
TCTGGCGCTTGCGATAATATGCATGGCCTTGGAGGTTGCTGGGCTCCTCT
CGGGGTATACGATTCACCAGAAAAATGCCAACATCGTGTCAGCTCTTGCG
CATCTAGGAGGCTTCCTGTCAACCCTGTCGATGGTGCTGAACGGGTGGAC
CGTTCGTGTGTACCCATATGTGTTTACAATATGCAGCTTCTTGCCAGCTG
GTTTCGACGTCTTGTGGTGGACTTCCCAGACGTTCGCACGAAAACTCGGG
CCAAGATAACTTCTTGCCAGCTGGTTTCGACGTCTTGTGGTGGACTTCCC
AGACGTTCGCACGAAAACTCGGGCCAAGATAA
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