mRNA_L-elsbetiae_contig567.14027.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig567.14027.1
Unique NamemRNA_L-elsbetiae_contig567.14027.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig567.14027.1 vs. uniprot
Match: D8LJE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE1_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.310e-5
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 3 
Query:  156 RLLFCSSHIGQVAVVRQLAPILHIGG 233
            RLLFCSSHIGQVAVVRQL P LHIGG
Sbjct:   82 RLLFCSSHIGQVAVVRQLTPSLHIGG 107
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BLAST of mRNA_L-elsbetiae_contig567.14027.1 vs. uniprot
Match: A0A6H5L3V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.980e-5
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 3 
Query:  156 RLLFCSSHIGQVAVVRQLAPILHIGG 233
            RLLFCSSHIGQVAVVRQL P LHIGG
Sbjct:  170 RLLFCSSHIGQVAVVRQLTPSLHIGG 195
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig567.14027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJE1_ECTSI3.310e-592.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3V8_9PHAE3.980e-592.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig567contigL-elsbetiae_contig567:23563..23874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size314
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.4132376-CDS-L-elsbetiae_contig567:23562..238741622816603.4132376-CDS-L-elsbetiae_contig567:23562..23874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig567 23563..23874 +
1691683678.1949875-CDS-L-elsbetiae_contig567:23562..238741691683678.1949875-CDS-L-elsbetiae_contig567:23562..23874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig567 23563..23874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig567.14027.1prot_L-elsbetiae_contig567.14027.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig567 23563..23874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig567.14027.1

>prot_L-elsbetiae_contig567.14027.1 ID=prot_L-elsbetiae_contig567.14027.1|Name=mRNA_L-elsbetiae_contig567.14027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MHALHGALSCRAFLLCLAIHLAAFFVLQLIFPPGSLLFCLTASFLCSFSG
RSGSCSVRRTSDRSPWYGSWHPSSTSGVSKDTPLSPTFPFLLEESNTDAL
FALF
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mRNA from alignment at L-elsbetiae_contig567:23563..23874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig567.14027.1 ID=mRNA_L-elsbetiae_contig567.14027.1|Name=mRNA_L-elsbetiae_contig567.14027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig567:23563..23874+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGCTTTGCACGGTGCTCTCTCTTGCCGTGCTTTCCTTTTATGTCT
TGCAATTCATCTCGCCGCCTTTTTCGTCTTACAGCTTATCTTTCCGCCCG
GCTCGCTGCTGTTCTGTCTTACTGCGTCTTTCTTGTGCTCGTTTTCTGGT
CGCAGCGGCTCCTGTTCTGTTCGTCGCACATCGGACAGGTCGCCGTGGTA
CGGCAGCTGGCACCCATCCTCCACATCGGGGGTAAGCAAGGACACTCCAC
TTTCGCCTACTTTTCCCTTTTTACTCGAAGAGAGCAATACCGATGCGTTG
TTTGCTCTGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig567:23563..23874+

>mRNA_L-elsbetiae_contig567.14027.1 ID=mRNA_L-elsbetiae_contig567.14027.1|Name=mRNA_L-elsbetiae_contig567.14027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig567:23563..23874+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGCTTTGCACGGTGCTCTCTCTTGCCGTGCTTTCCTTTTATGTCT
TGCAATTCATCTCGCCGCCTTTTTCGTCTTACAGCTTATCTTTCCGCCCG
GCTCGCTGCTGTTCTGTCTTACTGCGTCTTTCTTGTGCTCGTTTTCTGGT
CGCAGCGGCTCCTGTTCTGTTCGTCGCACATCGGACAGGTCGCCGTGGTA
CGGCAGCTGGCACCCATCCTCCACATCGGGGGTAAGCAAGGACACTCCAC
TTTCGCCTACTTTTCCCTTTTTACTCGAAGAGAGCAATACCGATGCGTTG
TTTGCTCTGTTTATGCATGCTTTGCACGGTGCTCTCTCTTGCCGTGCTTT
CCTTTTATGTCTTGCAATTCATCTCGCCGCCTTTTTCGTCTTACAGCTTA
TCTTTCCGCCCGGCTCGCTGCTGTTCTGTCTTACTGCGTCTTTCTTGTGC
TCGTTTTCTGGTCGCAGCGGCTCCTGTTCTGTTCGTCGCACATCGGACAG
GTCGCCGTGGTACGGCAGCTGGCACCCATCCTCCACATCGGGGGTAAGCA
AGGACACTCCACTTTCGCCTACTTTTCCCTTTTTACTCGAAGAGAGCAAT
ACCGATGCGTTGTTTGCTCTGTTT
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