mRNA_L-elsbetiae_contig567.14023.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig567.14023.1
Unique NamemRNA_L-elsbetiae_contig567.14023.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig567.14023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig567contigL-elsbetiae_contig567:3060..3813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size754
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig567.14023.1prot_L-elsbetiae_contig567.14023.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig567 3215..3643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.3198447-UTR-L-elsbetiae_contig567:3059..32141622816603.3198447-UTR-L-elsbetiae_contig567:3059..3214Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig567 3060..3214 +
1691683678.1388276-UTR-L-elsbetiae_contig567:3059..32141691683678.1388276-UTR-L-elsbetiae_contig567:3059..3214Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig567 3060..3214 +
1622816603.346792-UTR-L-elsbetiae_contig567:3643..38131622816603.346792-UTR-L-elsbetiae_contig567:3643..3813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig567 3644..3813 +
1691683678.1737764-UTR-L-elsbetiae_contig567:3643..38131691683678.1737764-UTR-L-elsbetiae_contig567:3643..3813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig567 3644..3813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.3330147-CDS-L-elsbetiae_contig567:3214..36431622816603.3330147-CDS-L-elsbetiae_contig567:3214..3643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig567 3215..3643 +
1691683678.1566026-CDS-L-elsbetiae_contig567:3214..36431691683678.1566026-CDS-L-elsbetiae_contig567:3214..3643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig567 3215..3643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig567.14023.1

>prot_L-elsbetiae_contig567.14023.1 ID=prot_L-elsbetiae_contig567.14023.1|Name=mRNA_L-elsbetiae_contig567.14023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MHRSLYLPKHHSHSHHLKKPDDTKTTPTKTVYLPTLQTLHTHHLSFSLRG
VVGFLRSNGYLEEQKRKRKQLQQRWDKGISTDAICTHRPISNTQLTLLPM
KALRQAGEPHGAMINTTVTIQPTRRPTLNGAHICKAHFPGLV*
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mRNA from alignment at L-elsbetiae_contig567:3060..3813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig567.14023.1 ID=mRNA_L-elsbetiae_contig567.14023.1|Name=mRNA_L-elsbetiae_contig567.14023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=754bp|location=Sequence derived from alignment at L-elsbetiae_contig567:3060..3813+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGTTTGGTGCCCTCCAAAACCCGGCTTTGTATTGTAACATGCCCAAT
CTTAACTTGTTCAAACAGCCTCCCTGGCCCATCGCCGTTGGGAGCAATGC
GCAACCGCCTGCATGAAAAAAAAACATCGAACCATCGATCGGTGCATTCG
CCAATATGCACCGCTCCTTATACTTACCCAAACACCACTCCCACAGCCAC
CACCTGAAGAAGCCAGACGACACAAAAACGACACCCACAAAAACGGTTTA
TTTACCAACTCTACAGACTTTACATACACACCATCTCTCCTTCTCCCTTC
GAGGTGTTGTTGGGTTTTTGCGATCTAATGGCTATCTGGAAGAGCAAAAA
CGAAAGCGAAAACAGCTCCAACAACGCTGGGACAAGGGTATCAGCACCGA
TGCAATATGTACTCACCGACCAATTTCAAACACACAACTCACACTTCTAC
CCATGAAAGCCCTCCGCCAAGCCGGAGAGCCTCATGGCGCCATGATAAAC
ACCACCGTAACAATCCAGCCAACTCGTCGTCCTACACTCAATGGGGCACA
CATATGCAAAGCACACTTTCCAGGGTTGGTCTAACTGCTCCTACTCCTTG
GAGAAAACAGCTCTAGCTTAAGTTTGACCGCTGCCACCTGAGAGGCCGGT
GGCCGTGGCTGTTCTAAGCCCCCGCCCCTGGCCCTGCTTCAAGCTCGAGC
GTGGCACACGCCGCCGATCTCGACTTTGATCCTCCCCCTCCCCTATTATC
GCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig567:3060..3813+

>mRNA_L-elsbetiae_contig567.14023.1 ID=mRNA_L-elsbetiae_contig567.14023.1|Name=mRNA_L-elsbetiae_contig567.14023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig567:3060..3813+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCGCTCCTTATACTTACCCAAACACCACTCCCACAGCCACCACCT
GAAGAAGCCAGACGACACAAAAACGACACCCACAAAAACGGTTTATTTAC
CAACTCTACAGACTTTACATACACACCATCTCTCCTTCTCCCTTCGAGGT
GTTGTTGGGTTTTTGCGATCTAATGGCTATCTGGAAGAGCAAAAACGAAA
GCGAAAACAGCTCCAACAACGCTGGGACAAGGGTATCAGCACCGATGCAA
TATGTACTCACCGACCAATTTCAAACACACAACTCACACTTCTACCCATG
AAAGCCCTCCGCCAAGCCGGAGAGCCTCATGGCGCCATGATAAACACCAC
CGTAACAATCCAGCCAACTCGTCGTCCTACACTCAATGGGGCACACATAT
GCAAAGCACACTTTCCAGGGTTGGTCTAAATGCACCGCTCCTTATACTTA
CCCAAACACCACTCCCACAGCCACCACCTGAAGAAGCCAGACGACACAAA
AACGACACCCACAAAAACGGTTTATTTACCAACTCTACAGACTTTACATA
CACACCATCTCTCCTTCTCCCTTCGAGGTGTTGTTGGGTTTTTGCGATCT
AATGGCTATCTGGAAGAGCAAAAACGAAAGCGAAAACAGCTCCAACAACG
CTGGGACAAGGGTATCAGCACCGATGCAATATGTACTCACCGACCAATTT
CAAACACACAACTCACACTTCTACCCATGAAAGCCCTCCGCCAAGCCGGA
GAGCCTCATGGCGCCATGATAAACACCACCGTAACAATCCAGCCAACTCG
TCGTCCTACACTCAATGGGGCACACATATGCAAAGCACACTTTCCAGGGT
TGGTCTAA
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