mRNA_L-elsbetiae_contig5666.14021.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5666.14021.1
Unique NamemRNA_L-elsbetiae_contig5666.14021.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5666.14021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5666contigL-elsbetiae_contig5666:10344..10674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size331
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.9048657-CDS-L-elsbetiae_contig5666:10343..106671622816602.9048657-CDS-L-elsbetiae_contig5666:10343..10667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 10344..10667 +
1691683677.871254-CDS-L-elsbetiae_contig5666:10343..106671691683677.871254-CDS-L-elsbetiae_contig5666:10343..10667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 10344..10667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.9167385-UTR-L-elsbetiae_contig5666:10667..106741622816602.9167385-UTR-L-elsbetiae_contig5666:10667..10674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5666 10668..10674 +
1691683677.8810627-UTR-L-elsbetiae_contig5666:10667..106741691683677.8810627-UTR-L-elsbetiae_contig5666:10667..10674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5666 10668..10674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5666.14021.1prot_L-elsbetiae_contig5666.14021.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5666 10344..10667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5666.14021.1

>prot_L-elsbetiae_contig5666.14021.1 ID=prot_L-elsbetiae_contig5666.14021.1|Name=mRNA_L-elsbetiae_contig5666.14021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MYVLAKQWPPLNPRPGRVVLVSIRAHRCVPRCGRSCHSSLRCGVIVYRFV
SSDILLGCEVGWDCPRALNKWGHGRRAGQPQQRQLSDSNYVHIHVEQRLT
LAACLLI*
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mRNA from alignment at L-elsbetiae_contig5666:10344..10674+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5666.14021.1 ID=mRNA_L-elsbetiae_contig5666.14021.1|Name=mRNA_L-elsbetiae_contig5666.14021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=331bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:10344..10674+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTATTGGCAAAACAATGGCCTCCGCTAAACCCACGCCCTGGGCG
TGTTGTGTTGGTGTCAATCCGCGCGCATCGGTGCGTGCCTCGGTGTGGAC
GGTCATGCCATTCCTCGCTGCGGTGCGGCGTCATCGTCTACCGGTTCGTT
AGCAGCGACATACTTCTCGGGTGCGAGGTAGGGTGGGACTGCCCAAGGGC
TCTCAATAAATGGGGGCATGGCCGAAGAGCTGGCCAGCCGCAGCAGAGAC
AGCTGTCCGATTCAAACTATGTACATATACATGTGGAACAAAGACTAACT
TTAGCTGCTTGCTTGCTCATTTAGGTTTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5666:10344..10674+

>mRNA_L-elsbetiae_contig5666.14021.1 ID=mRNA_L-elsbetiae_contig5666.14021.1|Name=mRNA_L-elsbetiae_contig5666.14021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:10344..10674+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTATTGGCAAAACAATGGCCTCCGCTAAACCCACGCCCTGGGCG
TGTTGTGTTGGTGTCAATCCGCGCGCATCGGTGCGTGCCTCGGTGTGGAC
GGTCATGCCATTCCTCGCTGCGGTGCGGCGTCATCGTCTACCGGTTCGTT
AGCAGCGACATACTTCTCGGGTGCGAGGTAGGGTGGGACTGCCCAAGGGC
TCTCAATAAATGGGGGCATGGCCGAAGAGCTGGCCAGCCGCAGCAGAGAC
AGCTGTCCGATTCAAACTATGTACATATACATGTGGAACAAAGACTAACT
TTAGCTGCTTGCTTGCTCATTTAGATGTATGTATTGGCAAAACAATGGCC
TCCGCTAAACCCACGCCCTGGGCGTGTTGTGTTGGTGTCAATCCGCGCGC
ATCGGTGCGTGCCTCGGTGTGGACGGTCATGCCATTCCTCGCTGCGGTGC
GGCGTCATCGTCTACCGGTTCGTTAGCAGCGACATACTTCTCGGGTGCGA
GGTAGGGTGGGACTGCCCAAGGGCTCTCAATAAATGGGGGCATGGCCGAA
GAGCTGGCCAGCCGCAGCAGAGACAGCTGTCCGATTCAAACTATGTACAT
ATACATGTGGAACAAAGACTAACTTTAGCTGCTTGCTTGCTCATTTAG
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