mRNA_L-elsbetiae_contig5666.14019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.620e-32 Identity = 77/189 (40.74%), Postives = 111/189 (58.73%), Query Frame = 1 Query: 58 HPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIVEEERMEMTG------AKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 HP L+VG LTG LM S + S DG+I KA G PPR+ DG+ GP P + +T++ SDP +V + R E++ EE E T K+G +A + +MPFGK G RR +EHAK H+GEV + +++RG +E ++DGT V ++ G S+FG R KD S++L + G ++ R G L W Sbjct: 137 HPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARK-SGPSWFGYRTKDPSYELWVSHSGVEITRNGMLDW 324
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.710e-22 Identity = 63/160 (39.38%), Postives = 100/160 (62.50%), Query Frame = 1 Query: 145 IDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLCPTRDGFKVLRRGQLLW 603 IDGS+ A G PP +++ + I PV ++ T+L+++P+R+ V R EIV E+ +E G K+ + V+ F+PFGK G R RR +E A HLGE A++++++G +E ++DG+ VL++ G S+FG RKKDS +++ T DG V R G+ W Sbjct: 319 IDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRK-SGPSWFGFRKKDSTYEVRVTEDGVVVSRGGKYDW 477
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 1.120e-19 Identity = 54/159 (33.96%), Postives = 92/159 (57.86%), Query Frame = 1 Query: 148 DGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIVEEERMEMTGA------KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 DGS+ + G PR+ +G+ G +P+ T+L ++ R + + R EI+ ++ KK ++ M F+PFGK G RR ++ A+ HLGE + ++S+G++E ++DGT VL++ G S+FG R+ D S++L T +G +V RRG +W Sbjct: 8 DGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKG-PSYFGFRRTDPSYELQVTEEGIEVSRRGDFVW 165
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 1.160e-19 Identity = 57/146 (39.04%), Postives = 91/146 (62.33%), Query Frame = 1 Query: 187 PRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV----EEERMEMTGA--KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 PR+ DG GPVP+ T+L ++PR++ +V R E + E++R + G ++G VA +M F+PFGK G RR +EHA+ H+GE ++I+ +G +E ++DG VL++ G S+FG R+ D S++L T +G + RRG W Sbjct: 339 PRDADGNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRK-SGPSWFGFRRTDRSYELRVTEEGVVISRRGMYDW 483
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: A0A6H5JQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 5.950e-19 Identity = 61/194 (31.44%), Postives = 103/194 (53.09%), Query Frame = 1 Query: 40 PPELTAHPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDSHQLCPTRDGFKVLRRGQLLW 603 P H + L VG L G L + + + ID + A G PP +++ + + P ++ T+L+++ +R+ V + EI+ E+E +E G KK + V+ F+PFGK G R RR +EHA HLGE ++++++G +E ++DG+ VL + G S+FG RKKD +G ++ +G W Sbjct: 111 PDAFQFHSDFVLHVGDFLHGRLPNLAKTAMVYATSIDCFVVRATATGTPPGDLEDRTVDPASQTRRTLLEANTQRMSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAHLGEATLSVTNKGDLEVSVDGSIVLGK-SGPSWFGFRKKDFTYEVRVTEGVVMVSQGGHDW 303
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 3.280e-15 Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1 Query: 331 KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 ++G VA +M F+PFGK G RR +EHA+ H+GE ++I+ +G +E ++DGT VL++ G S+FG R+ D S++L T +G + RRG W Sbjct: 29 RRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRK-SGPSWFGFRRTDRSYELRVTEEGVDISRRGMYDW 119
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 5.720e-14 Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 301 EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLCPTRDGFKVLRRGQLLW 603 E+E +E G K + V+ F+PFGK G R RR +EH HLGE ++++++G +E ++DG+ VL++ S+FG R+KDS +++ T DG V R G+ W Sbjct: 8 EKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRK-SRPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDW 108 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5666.14019.1 >prot_L-elsbetiae_contig5666.14019.1 ID=prot_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp MLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQback to top mRNA from alignment at L-elsbetiae_contig5666:1427..2686- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5666.14019.1 ID=mRNA_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:1427..2686- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5666:1427..2686- >mRNA_L-elsbetiae_contig5666.14019.1 ID=mRNA_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:1427..2686- (Laminarionema elsbetiae ELsaHSoW15)back to top |