mRNA_L-elsbetiae_contig5666.14019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5666.14019.1
Unique NamemRNA_L-elsbetiae_contig5666.14019.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.620e-32
Identity = 77/189 (40.74%), Postives = 111/189 (58.73%), Query Frame = 1
Query:   58 HPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIVEEERMEMTG------AKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603
            HP   L+VG  LTG LM     S +  S  DG+I   KA G PPR+ DG+  GP P + +T++ SDP +V +    R E++ EE  E T        K+G +A +  +MPFGK G   RR +EHAK H+GEV + +++RG +E ++DGT V ++  G S+FG R KD S++L  +  G ++ R G L W
Sbjct:  137 HPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARK-SGPSWFGYRTKDPSYELWVSHSGVEITRNGMLDW 324          
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.710e-22
Identity = 63/160 (39.38%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  145 IDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLCPTRDGFKVLRRGQLLW 603
            IDGS+    A G PP +++ + I PV ++  T+L+++P+R+  V   R EIV      E+  +E  G K+  +  V+ F+PFGK G R RR +E A  HLGE A++++++G +E ++DG+ VL++  G S+FG RKKDS +++  T DG  V R G+  W
Sbjct:  319 IDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRK-SGPSWFGFRKKDSTYEVRVTEDGVVVSRGGKYDW 477          
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-19
Identity = 54/159 (33.96%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  148 DGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIVEEERMEMTGA------KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603
            DGS+    + G  PR+ +G+  G +P+   T+L ++ R + +    R EI+    ++          KK  ++  M F+PFGK G   RR ++ A+ HLGE  + ++S+G++E ++DGT VL++ G  S+FG R+ D S++L  T +G +V RRG  +W
Sbjct:    8 DGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKG-PSYFGFRRTDPSYELQVTEEGIEVSRRGDFVW 165          
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.160e-19
Identity = 57/146 (39.04%), Postives = 91/146 (62.33%), Query Frame = 1
Query:  187 PRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV----EEERMEMTGA--KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603
            PR+ DG   GPVP+   T+L ++PR++ +V   R E +    E++R  + G   ++G VA +M F+PFGK G   RR +EHA+ H+GE  ++I+ +G +E ++DG  VL++  G S+FG R+ D S++L  T +G  + RRG   W
Sbjct:  339 PRDADGNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRK-SGPSWFGFRRTDRSYELRVTEEGVVISRRGMYDW 483          
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: A0A6H5JQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.950e-19
Identity = 61/194 (31.44%), Postives = 103/194 (53.09%), Query Frame = 1
Query:   40 PPELTAHPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDSHQLCPTRDGFKVLRRGQLLW 603
            P     H +  L VG  L G L      + +  + ID  +    A G PP +++ + + P  ++  T+L+++ +R+  V   + EI+      E+E +E  G KK  +  V+ F+PFGK G R RR +EHA  HLGE  ++++++G +E ++DG+ VL +  G S+FG RKKD        +G  ++ +G   W
Sbjct:  111 PDAFQFHSDFVLHVGDFLHGRLPNLAKTAMVYATSIDCFVVRATATGTPPGDLEDRTVDPASQTRRTLLEANTQRMSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAHLGEATLSVTNKGDLEVSVDGSIVLGK-SGPSWFGFRKKDFTYEVRVTEGVVMVSQGGHDW 303          
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.280e-15
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1
Query:  331 KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603
            ++G VA +M F+PFGK G   RR +EHA+ H+GE  ++I+ +G +E ++DGT VL++  G S+FG R+ D S++L  T +G  + RRG   W
Sbjct:   29 RRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRK-SGPSWFGFRRTDRSYELRVTEEGVDISRRGMYDW 119          
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.720e-14
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  301 EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLCPTRDGFKVLRRGQLLW 603
            E+E +E  G  K  +  V+ F+PFGK G R RR +EH   HLGE  ++++++G +E ++DG+ VL++    S+FG R+KDS +++  T DG  V R G+  W
Sbjct:    8 EKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRK-SRPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDW 108          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHB6_ECTSI1.620e-3240.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI1.710e-2239.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTM0_ECTSI1.120e-1933.96Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G9B0_ECTSI1.160e-1939.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQZ9_9PHAE5.950e-1931.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9A5_ECTSI3.280e-1543.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T0_ECTSI5.720e-1440.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5666contigL-elsbetiae_contig5666:1427..2686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size724
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5666.14019.1prot_L-elsbetiae_contig5666.14019.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5666 1515..2587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.951219-UTR-L-elsbetiae_contig5666:1426..15141622816602.951219-UTR-L-elsbetiae_contig5666:1426..1514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5666 1427..1514 -
1691683677.8907783-UTR-L-elsbetiae_contig5666:1426..15141691683677.8907783-UTR-L-elsbetiae_contig5666:1426..1514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5666 1427..1514 -
1622816602.9888096-UTR-L-elsbetiae_contig5666:2587..26861622816602.9888096-UTR-L-elsbetiae_contig5666:2587..2686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5666 2588..2686 -
1691683677.925984-UTR-L-elsbetiae_contig5666:2587..26861691683677.925984-UTR-L-elsbetiae_contig5666:2587..2686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5666 2588..2686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.9640021-CDS-L-elsbetiae_contig5666:1514..16851622816602.9640021-CDS-L-elsbetiae_contig5666:1514..1685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 1515..1685 -
1691683677.901835-CDS-L-elsbetiae_contig5666:1514..16851691683677.901835-CDS-L-elsbetiae_contig5666:1514..1685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 1515..1685 -
1622816602.9746957-CDS-L-elsbetiae_contig5666:2221..25871622816602.9746957-CDS-L-elsbetiae_contig5666:2221..2587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 2222..2587 -
1691683677.9139454-CDS-L-elsbetiae_contig5666:2221..25871691683677.9139454-CDS-L-elsbetiae_contig5666:2221..2587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 2222..2587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5666.14019.1

>prot_L-elsbetiae_contig5666.14019.1 ID=prot_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQ
SDPRRVMEVHRRRVEIVEEERMEMTGAKKGMVARVMSFMPFGKAGRRERR
RKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDSHQ
LCPTRDGFKVLRRGQLLWRREPTEDNKD*
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mRNA from alignment at L-elsbetiae_contig5666:1427..2686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5666.14019.1 ID=mRNA_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:1427..2686- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTCGGCCGCGGCCGCAGCAGCATCAACGTGGTCCTGCCTCCGGAACT CACGGCACACCCCGAACGTTTCCTGAGGGTTGGGCATCGCTTGACGGGCA TGCTGATGTACGAGGACAACCTCTCGGCGCTGAGTGTCAGTCACATCGAC GGGTCCATCCGGTTGGTGAAGGCGGCCGGACCGCCGCCCCGTAACATAGA CGGCAAGCAGATAGGCCCCGTACCGAGATCGTTCTCCACCGTGCTCCAAT CCGACCCACGCAGAGTGATGGAGGTGCACCGGCGGCGGGTGGAAATTGTC GAGGAGGAAAGGATGGAGATGACGGGTGCCAAGAAAGGTATGGTGGCGAG GGTCATGAGCTTCATGCCCTTCGGCAAGGCGGGCCGGAGGGAACGACGGC GGAAAGAGCACGCCAAGACCCACCTAGGGGAGGTCGCCGTCACCATCAGC AGCAGAGGAGTTGTGGTGAGCACGCGCGCACAGGCGAAGAGCAGGAGAAC ACGAAACACATAGGAGTAATATTCTAGGGGCAAATGATACGCTTGAAAGC AGTCAATCCTGGACACCATTTTCGCAACCCACACAAAATAAATAAATCAG CGCGCAACACCCGGGGGCTGCGTTTCGTAGCGGCGAGTTGCTGTTTTCCT GCAAAGATCATATCAGAGATAGAGGTGAAAAGGTCGTTCTCGCCATTGGG TGGATGTAGCTGGCGCTGTGACAGTTTGACGGCGCTTCTTTGTAGAGCCT CCTATTTCGCAGTTGGAGCAAAACAAAGTAAGCATGTTCACGCGACCGTT CAACCAAATCCAACCAATGAGCGATAACTCAAAACATTTTGGTCGTAACT ACTACTAGAAGTATATCATTATACAAACGACCATGGTGCCCACCTACATG CCTGCATGTATCCGGAAGCCCCTACAATCGTACAAACAACGGCTCTCGAT GTACCTCCCCCCCTTTTTCCTTCGTTATTCCGCCGCACGAACAACCAACA GGAGGCCACGATGGATGGCACAACGGTACTCAAAGAGGTTGGGGGCCGAT CGTTCTTCGGTTGCAGGAAGAAGGACTCTCACCAGCTCTGCCCCACGCGC GACGGTTTCAAGGTGCTGCGACGAGGCCAGCTCCTCTGGCGGCGTGAGCC CACCGAAGACAACAAGGACTAGAAAAAAAGATCCGAGTAGATTTAACTTT GTAGGACCCCCCCCCCCCTCTTGAGGGTCTAGAACTGTCCTTGTTTTCGT TTTCACCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5666:1427..2686-

>mRNA_L-elsbetiae_contig5666.14019.1 ID=mRNA_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:1427..2686- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGATGTACGAGGACAACCTCTCGGCGCTGAGTGTCAGTCACATCGA
CGGGTCCATCCGGTTGGTGAAGGCGGCCGGACCGCCGCCCCGTAACATAG
ACGGCAAGCAGATAGGCCCCGTACCGAGATCGTTCTCCACCGTGCTCCAA
TCCGACCCACGCAGAGTGATGGAGGTGCACCGGCGGCGGGTGGAAATTGT
CGAGGAGGAAAGGATGGAGATGACGGGTGCCAAGAAAGGTATGGTGGCGA
GGGTCATGAGCTTCATGCCCTTCGGCAAGGCGGGCCGGAGGGAACGACGG
CGGAAAGAGCACGCCAAGACCCACCTAGGGGAGGTCGCCGTCACCATCAG
CAGCAGAGGAGTTGTGATGCTGATGTACGAGGACAACCTCTCGGCGCTGA
GTGTCAGTCACATCGACGGGTCCATCCGGTTGGTGAAGGCGGCCGGACCG
CCGCCCCGTAACATAGACGGCAAGCAGATAGGCCCCGTACCGAGATCGTT
CTCCACCGTGCTCCAATCCGACCCACGCAGAGTGATGGAGGTGCACCGGC
GGCGGGTGGAAATTGTCGAGGAGGAAAGGATGGAGATGACGGGTGCCAAG
AAAGGTATGGTGGCGAGGGTCATGAGCTTCATGCCCTTCGGCAAGGCGGG
CCGGAGGGAACGACGGCGGAAAGAGCACGCCAAGACCCACCTAGGGGAGG
TCGCCGTCACCATCAGCAGCAGAGGAGTTGTGGAGGCCACGATGGATGGC
ACAACGGTACTCAAAGAGGTTGGGGGCCGATCGTTCTTCGGTTGCAGGAA
GAAGGACTCTCACCAGCTCTGCCCCACGCGCGACGGTTTCAAGGTGCTGC
GACGAGGCCAGCTCCTCTGGCGGCGTGAGCCCACCGAAGACAACAAGGAC
TAGGAGGCCACGATGGATGGCACAACGGTACTCAAAGAGGTTGGGGGCCG
ATCGTTCTTCGGTTGCAGGAAGAAGGACTCTCACCAGCTCTGCCCCACGC
GCGACGGTTTCAAGGTGCTGCGACGAGGCCAGCTCCTCTGGCGGCGTGAG
CCCACCGAAGACAACAAGGACTAG
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