mRNA_L-elsbetiae_contig5660.14014.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5660.14014.1
Unique NamemRNA_L-elsbetiae_contig5660.14014.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5660.14014.1 vs. uniprot
Match: A0A6H5KSQ1_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.260e-5
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:  256 RPDGYEGPLCPSGGFFSKPQTPPTTPTPSRSNG 354
            RPDG+EGPLCPSG FFSKPQTPP +PT   SNG
Sbjct:  428 RPDGHEGPLCPSGSFFSKPQTPPGSPTGGVSNG 460
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5660.14014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KSQ1_9PHAE2.260e-578.79B box-type domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5660contigL-elsbetiae_contig5660:7129..7653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.609571-CDS-L-elsbetiae_contig5660:7128..76531622816602.609571-CDS-L-elsbetiae_contig5660:7128..7653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5660 7129..7653 +
1691683677.7096415-CDS-L-elsbetiae_contig5660:7128..76531691683677.7096415-CDS-L-elsbetiae_contig5660:7128..7653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5660 7129..7653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5660.14014.1prot_L-elsbetiae_contig5660.14014.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5660 7129..7653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5660.14014.1

>prot_L-elsbetiae_contig5660.14014.1 ID=prot_L-elsbetiae_contig5660.14014.1|Name=mRNA_L-elsbetiae_contig5660.14014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
KPAARAACSGAAGAGTPAENGKQAAAGVGGSSSAVGIPPKKFKLNGSAAA
AATPPPPRPATAAAAGASAAAGSTPTPQSARRGGSRPDGYEGPLCPSGGF
FSKPQTPPTTPTPSRSNGAKRPRSTSLPRVTSAGEPSGDDKPTGPAAAAA
TAATAEDPRNSSSNGGRPGLHENGE
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mRNA from alignment at L-elsbetiae_contig5660:7129..7653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5660.14014.1 ID=mRNA_L-elsbetiae_contig5660.14014.1|Name=mRNA_L-elsbetiae_contig5660.14014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=525bp|location=Sequence derived from alignment at L-elsbetiae_contig5660:7129..7653+ (Laminarionema elsbetiae ELsaHSoW15)
AAACCTGCTGCTCGTGCAGCCTGTTCTGGTGCGGCGGGGGCGGGAACGCC
TGCGGAGAACGGCAAGCAGGCTGCGGCGGGCGTTGGCGGCTCGTCGTCGG
CGGTGGGTATCCCGCCGAAGAAGTTCAAGCTCAACGGCAGCGCTGCGGCA
GCGGCAACGCCGCCGCCACCGCGGCCAGCAACAGCAGCAGCGGCGGGGGC
GAGCGCTGCGGCAGGCTCGACGCCGACCCCGCAGAGCGCACGCAGGGGGG
GTAGCAGGCCCGACGGCTACGAGGGGCCGCTGTGCCCCTCCGGCGGCTTC
TTCTCCAAGCCGCAGACACCGCCGACCACGCCGACGCCTTCACGGTCCAA
CGGCGCCAAGCGCCCGAGGTCCACGTCGCTTCCGAGGGTGACATCAGCAG
GCGAGCCCTCCGGAGACGACAAACCGACCGGTCCCGCCGCTGCCGCCGCC
ACCGCTGCCACCGCCGAGGACCCTCGCAACAGCAGCAGCAACGGGGGAAG
GCCAGGTTTGCATGAGAACGGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5660:7129..7653+

>mRNA_L-elsbetiae_contig5660.14014.1 ID=mRNA_L-elsbetiae_contig5660.14014.1|Name=mRNA_L-elsbetiae_contig5660.14014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig5660:7129..7653+ (Laminarionema elsbetiae ELsaHSoW15)
AAACCTGCTGCTCGTGCAGCCTGTTCTGGTGCGGCGGGGGCGGGAACGCC
TGCGGAGAACGGCAAGCAGGCTGCGGCGGGCGTTGGCGGCTCGTCGTCGG
CGGTGGGTATCCCGCCGAAGAAGTTCAAGCTCAACGGCAGCGCTGCGGCA
GCGGCAACGCCGCCGCCACCGCGGCCAGCAACAGCAGCAGCGGCGGGGGC
GAGCGCTGCGGCAGGCTCGACGCCGACCCCGCAGAGCGCACGCAGGGGGG
GTAGCAGGCCCGACGGCTACGAGGGGCCGCTGTGCCCCTCCGGCGGCTTC
TTCTCCAAGCCGCAGACACCGCCGACCACGCCGACGCCTTCACGGTCCAA
CGGCGCCAAGCGCCCGAGGTCCACGTCGCTTCCGAGGGTGACATCAGCAG
GCGAGCCCTCCGGAGACGACAAACCGACCGGTCCCGCCGCTGCCGCCGCC
ACCGCTGCCACCGCCGAGGACCCTCGCAACAGCAGCAGCAACGGGGGAAG
GCCAGGTTTGCATGAGAACGGGGAGAAACCTGCTGCTCGTGCAGCCTGTT
CTGGTGCGGCGGGGGCGGGAACGCCTGCGGAGAACGGCAAGCAGGCTGCG
GCGGGCGTTGGCGGCTCGTCGTCGGCGGTGGGTATCCCGCCGAAGAAGTT
CAAGCTCAACGGCAGCGCTGCGGCAGCGGCAACGCCGCCGCCACCGCGGC
CAGCAACAGCAGCAGCGGCGGGGGCGAGCGCTGCGGCAGGCTCGACGCCG
ACCCCGCAGAGCGCACGCAGGGGGGGTAGCAGGCCCGACGGCTACGAGGG
GCCGCTGTGCCCCTCCGGCGGCTTCTTCTCCAAGCCGCAGACACCGCCGA
CCACGCCGACGCCTTCACGGTCCAACGGCGCCAAGCGCCCGAGGTCCACG
TCGCTTCCGAGGGTGACATCAGCAGGCGAGCCCTCCGGAGACGACAAACC
GACCGGTCCCGCCGCTGCCGCCGCCACCGCTGCCACCGCCGAGGACCCTC
GCAACAGCAGCAGCAACGGGGGAAGGCCAGGTTTGCATGAGAACGGGGAG
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