mRNA_L-elsbetiae_contig5659.14008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5659.14008.1
Unique NamemRNA_L-elsbetiae_contig5659.14008.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 645 bits (1664), Expect = 7.410e-218
Identity = 394/616 (63.96%), Postives = 428/616 (69.48%), Query Frame = 1
Query:    7 TSSDDGSFSQYHHPYPLHDAAEAGDIETLSSILRP--PKRDASRPSLELPAAAEGXXXXXXXXXXXXXXXXXXE--------------DAGRGQAREGGGHSNGGSNMNXXXXXXXXDADSDGFRGPDVDIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSKERLNCRPLHLAALGGHVGATRALITAGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIPDTLPELQPGGG------------------GRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAG-STRAESGEAVSVEHEAKGDGGAGGA-----------------------MVPKAKTVVLHHPLCLEHHSCPPIRRSGGDPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            +SS D  F  YH PYPLHDAAEAGD+ETL+ ILRP  PK+ AS  S         XXXXXXXXXXXXXXXXXX               D                    XXXXXXXX  D  GFR P VD+EERD EGCTPLHVAL AK LDAARLLLECGAGTT+RLE         SVASVG+HRGFA+AALKLLLE+ HDVSVKDDRGQTLLHLAASFGLE+AMATLL+APGG+ELMDSKERL+CRPLHLAAL GHVG TRALI+AGCDTS +NLHGNTALHLAC+KARW VARVLLD GKA   ACNKNKQ PAA+ALK GLRIPDTLPEL                                    XXXXXXX         +W+F  AG + R +   A +   +A GD G   A                          K +T VLHHPLCL+HHSCPPIRR G DPPPENVKRLEVIYN+DSGVLRA+EFS LEWDSNPSRAEL DVLRVHDF Y++KLERLC++IP   G L+HLDGDTAVSH+SFEAA+RAAGSVCD VDRVMTGRNRNAFCAVRPPGHHAGTRGLVTC ND  GSHGFCLLNNV
Sbjct:  102 SSSSDEDFRSYHRPYPLHDAAEAGDMETLTQILRPRQPKKPASISSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLGGFRPPSVDMEERDHEGCTPLHVALTAKNLDAARLLLECGAGTTRRLEXXXXXXXXXSVASVGKHRGFANAALKLLLEYHHDVSVKDDRGQTLLHLAASFGLEDAMATLLEAPGGRELMDSKERLSCRPLHLAALAGHVGITRALISAGCDTSFTNLHGNTALHLACSKARWGVARVLLDDGKASVVACNKNKQTPAAVALKQGLRIPDTLPELHEAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWEFPVAGGAARGDDTAAAAATVDAVGDEGIRQAGAXXXXXXXXXXXXXXXXXXXXXXXAKTRTAVLHHPLCLQHHSCPPIRRWGADPPPENVKRLEVIYNEDSGVLRADEFSGLEWDSNPSRAELADVLRVHDFNYVEKLERLCSSIPEGPGSLAHLDGDTAVSHNSFEAALRAAGSVCDGVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCANDGTGSHGFCLLNNV 717          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A7S1B8G6_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8G6_9STRA)

HSP 1 Score: 319 bits (818), Expect = 2.310e-95
Identity = 177/452 (39.16%), Postives = 250/452 (55.31%), Query Frame = 1
Query:  346 DIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSK-ERLNCRPLHLAALGGHV------GATRALITAGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIPDTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRSGGDPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            D+ ERD++  TP+H+A+  +KLD  + LL+      K+ +GS P H+ALSV S+  H  FA+  L LL  H  D+S +DD   T L+LA ++ L   +  +L    G + +++K +R+  R LH  A  G           + LI AG     +N +G T LHLA     W+VAR+LL  G A     +K  +  A +A K GL  P  + +L+  G                                   P   T                       + P +KT++L H LC +H+SCPPI R G DPPPEN++RLEV+ N ++G+L ++EF S  W++N  RA + DVL+VH++ Y++K+ R+C  +P+       LD DT +S  SFE+AMRAAGSVC+AVD+VM+G  RNAFCA+RPPGHHAG RG+V+C ND +GSHGFCLLNNV
Sbjct:   89 DLNERDEDENTPIHIAIQNRKLDCVKELLDANVMINKKCDGSSPVHVALSVGSIPEHSKFAEDCLNLLTVHSADLSERDDSLFTPLYLACAYNLPNCVKIILSDQNGSQTLNAKADRIGGRALHACARFGRSFGQSLDSIAKFLIDAGAHVDCANFYGRTPLHLAAASGNWSVARLLLSSG-ASPNLTDKKGETAATIAHKRGLVPPADISQLRIPG---------------------------------VIPIRDT----------------------LLDPPSKTILLCHELCSKHYSCPPIYRGGPDPPPENIRRLEVLINSETGILNSKEFCSCVWETNARRASMADVLKVHEYSYVEKISRICNALPDHPQASFPLDPDTVISKWSFESAMRAAGSVCEAVDKVMSGDFRNAFCAIRPPGHHAGPRGIVSCLNDPEGSHGFCLLNNV 484          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A835YM84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM84_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.200e-92
Identity = 202/505 (40.00%), Postives = 258/505 (51.09%), Query Frame = 1
Query:  343 VDIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQA---PGG-----------------------KELMDSKERLNCRPLHLAALGGHVGATRAL---ITAGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLR------IPDTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRSGGDPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQ-----------------KLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTG-------RNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            VD++ERD +G T LHVAL +++L A + LLE GAG  + LEGS PAHIAL+V +V RH  FA AALKLLL+H+ D + KDDRGQT LHLAA+F L + +  L+      GG                       ++ +D++ER   R LHLAA              + AG   ++ +  G+T LH A   ARW  AR L                                  +P  L E                                                 G A + E     +GG       +  T+V+ H LC  H+SCPPIRRSG +PPPENV+RLEVIY++D+GVL A EF+ +EWD++P RA L DVLRVH++ Y+                  +L++LCA+IP+    + HLDGDTAVS +S+EAA+RAAGSVC A+DRV  G       RNRNAFCAVRPPGHHAG R     G   QGSHGFCLLNNV
Sbjct:  106 VDVDERDGDGATALHVALLSRQLGAVKALLEAGAGPNRGLEGSLPAHIALTVGAVPRHAPFALAALKLLLQHEADPTAKDDRGQTPLHLAANFNLLDCLQLLIDTVSKSGGADGAXXXXXXXXXXXXXXXXXXLRDFLDARERQGLRALHLAAAXXXXXXXXXXXXXLAAGASPALRSALGDTPLHAAAAHARWGAARALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAVPPDLAEAL-----------------------------------------------GGAAAXEXXXXXEGGE------ELPTLVMKHALCEAHYSCPPIRRSGPEPPPENVRRLEVIYDEDTGVLSAAEFAGVEWDADPPRAALADVLRVHEYGYVSXXXXXXXXXXXXXXXXXRLQQLCASIPDAPTAIKHLDGDTAVSRASYEAALRAAGSVCSAIDRVCGGGGSGARRRNRNAFCAVRPPGHHAGPR---QGGAALQGSHGFCLLNNV 554          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A7S3Q0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M5_9STRA)

HSP 1 Score: 307 bits (787), Expect = 1.710e-89
Identity = 181/480 (37.71%), Postives = 265/480 (55.21%), Query Frame = 1
Query:  346 DIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSK-ERLNCRPLHLAAL----------GGHV-----------------GATRALITA------GCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIP-DTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRSGGDPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            D++ RD +G T LHVA+ A+KL+  RLLLE GA   ++ + S P H A+S+ S+  H+ FA  A++LL +H  D+++KDD   T L+LA  + +   + +LL    G + ++ K +R   RPLH AA           G  +                 G+T+A++T       G +   +N +G + LH+A ++  W +AR+LL  G AD    +     P  +A K G+ IP D +P L P           SN  P                                 +++E   K D      + P+A+T ++ H LC +H +CPPI R+  +PPPENV+RL V+ + + G+LR  EF   +W+    RA + DVL+VH++KYI+ + ++C+ IP+    ++HLD DT +S  SFE+AMRA+GSVC+AVDR+M G  RNAFCAVRPPGHHAG RG+V C ND +GSHGFCLLNNV
Sbjct:  289 DLDLRDPDGNTALHVAIHARKLEHIRLLLEAGASPHQKCDYSAPIHTAISIGSITAHKSFAFNAVELLNKHGADLAMKDDSSHTPLYLATMYNVPSVVGSLLNDSIGVQTLNLKSDRTGGRPLHAAAKFDISKVKAVNGAAIATATGAGNGMGSPEAGRGSTKAILTQMLLDVPGIEVDAANNYGRSPLHVAASRGNWVIARLLLTAG-ADPNLKDGRGFTPGLIAYKRGMPIPVDLIPTLGP-----------SNIPPSIQ------------------------------MTIEMPPKRDL----IIDPEAQTFLICHELCSQHLTCPPISRNSTEPPPENVRRLSVLLDDEVGILRGAEFDGCKWEGESRRAAMADVLKVHEYKYIETISQICSEIPDHPNAIAHLDTDTGMSRWSFESAMRASGSVCEAVDRIMAGDFRNAFCAVRPPGHHAGPRGIVKCENDPEGSHGFCLLNNV 722          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A7S2LK53_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK53_9STRA)

HSP 1 Score: 305 bits (781), Expect = 2.640e-89
Identity = 175/461 (37.96%), Postives = 249/461 (54.01%), Query Frame = 1
Query:  346 DIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSK-ERLNCRPLHLAAL-----------GGHVGATRALI-TAGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIPDTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRS---GGDPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            D++ERD +  TPLH+A+ A+K+D  R+LLE GA   K+ +GS P H+A+S+ ++  H  FA   ++LL     D++++DD   T L+LA    L   +  LL  P  +  ++ K +R   R LH AA             G  G T  L+ T   +    N +G T LH+A  +  W  AR+L++ G AD  A +K    P  +A K G+ +P+ L  L        +D+   +                                    + ++              P   T++L H +CL+H +CPPI R      +PPPENV+RL V+ N D G+LR  EFS  +W+++  RA L DVL+VH++ Y++K  +LC+  P+    +  LD DT VSH SFEAA+RAAGSVC+AVD+VM G  RNAFCA+RPPGHHAG RG+VTC ND  GSHGFCLLNN+
Sbjct:  205 DLDERDDDENTPLHIAIHARKIDNVRVLLEAGASLFKKCDGSAPIHLAISLGAISTHAEFATQCVELLQNVGADMTMRDDSVHTPLYLACVSTLVPVLEILLNDPKSRATLNLKADRTGGRALHAAAKCDVARKGSPRPAGERGVTEMLLATPEIEIDAQNNYGRTPLHIAAARGNWHAARLLINAG-ADVHAIDKRGFTPGQVARKRGMVVPNDLKMLS-------EDSPVRD------------------------------------LIID--------------PDGSTLILCHEVCLQHRTCPPIVRGVEESSEPPPENVRRLNVLINNDDGILRCGEFSGCKWNTDVRRAALADVLKVHEYTYVEKTSKLCSATPDHPKAIQTLDADTTVSHWSFEAALRAAGSVCEAVDKVMAGDYRNAFCAIRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNI 607          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A4D9CRN0_9STRA (Hist_deacetyl domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRN0_9STRA)

HSP 1 Score: 297 bits (761), Expect = 8.360e-87
Identity = 180/454 (39.65%), Postives = 244/454 (53.74%), Query Frame = 1
Query:  343 VDIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPG-GKELMDSKERLNCRPLHLAALGGHVGATRALITAGCDTSISNLHGNTALHL----ACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIPDTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPI-RRSGGDPPPENVKRLEVIYNKDSGVLRAEEFSS--LEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            VD+ E+D   CTPLHVA+ A++L+A RLLL+ GA   K+ EGS P H AL+V S+ +HR FA AA++LL+E   DV+++DD   T LHLAA  GL E    LL   G   E ++ K+R+ CR                                         AC  A W  + VLLD   A A++ +K +  P  +A + G  +P  L   Q   G     +  ++GAP                                                       T+++  P CLEH +C PI R +  DPPPENV RL+V+ + D+GVL A+EF++  +EW      A L D+LRVHD+ Y+++++R+CA++P+ES  + HLDGDTAVS +S+ AA+RAAG+ C AVDRVM G NRNAFCAVRPPGHHAG+RG+V C  +  GSHGFCLLNNV
Sbjct:  133 VDVNEKDNFNCTPLHVAVQARQLEAMRLLLDSGARVNKKSEGSTPLHTALAVGSLSQHRAFALAAVQLLVERGADVTLRDDCHHTPLHLAAFHGLTECAKFLLSEQGRAAECLEVKDRIGCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACQNACWDASGVLLDQEPALAKSKDKQQVTPGQVAKRAGHAVPQAL---QAALGLSDATDTPASGAP-----------------------------------------------------VATLLVADPTCLEHRTCAPIVRATFCDPPPENVNRLKVLLDPDTGVLHADEFATAGVEWCREAPEAPLADLLRVHDYDYVRRIQRVCASLPDESHSIGHLDGDTAVSRASWLAALRAAGATCLAVDRVMAGANRNAFCAVRPPGHHAGSRGVVKCDPEDHGSHGFCLLNNV 530          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A1Z5J6P1_FISSO (Hist_deacetyl domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6P1_FISSO)

HSP 1 Score: 292 bits (747), Expect = 1.770e-84
Identity = 184/513 (35.87%), Postives = 262/513 (51.07%), Query Frame = 1
Query:  331 RGPDVDIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSK-ERLNCRPLHLAA------------------------------------LGGHVG-------------------ATRALIT------AGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIPDTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRSGGDPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQG-SHGFCLLNNV 1680
            R  DV + ERD++  T LH+A+ ++KLD  ++LLE GA    R +GS P H A+S+ +V  +R F+   +  L EH  D++ KDD   T L+L   F   +  + +L    G   ++++ +R   R LH AA                                    + G VG                   +T AL+T      +G +   +N+ G T LH+AC++  W+VAR+L+  G A     ++    P  +A K G+ IP+ L              V + G P                            E+G    +             + P  +T+VL H LCL H +CPPIRR+  DPPPENV+RL V+ + ++G+L+  EFSSL W     R  ++DVL+VHD+ Y++ + RL ++IP+    ++HLDGDTA+S  SFEAAMRAAGSVC+AVD+V+ G  RNAFCAVRPPGHHAG RG+V C ND +G SHGFCLLNNV
Sbjct:  166 RDLDVHVNERDEDENTALHIAILSRKLDHVKVLLEAGASFRLRCDGSLPIHTAISMGAVLANRQFSYECVVTLHEHGADLTAKDDSLHTPLYLTCMFNQPQIASYILSDEEGLSTLNTRADRAGNRALHAAARYDTIDNPALSKSAFATGQVRSHHHPDGSVVSSMHTIPGIVGNTDAAAVSSKKDSDAATHSSTEALLTLVLLGSSGVEIDATNVMGRTPLHVACSRGNWSVARLLIQAG-ASTTLVDRRGFTPGQVAYKKGMSIPNDL--------------VETLGDPP---------------------------ETGTIPPIRDL---------LVDPDGQTMVLCHELCLLHRTCPPIRRNSPDPPPENVRRLHVLVDAETGILQGSEFSSLLWKKEARRVAISDVLKVHDYNYVETISRLASSIPDHPNAIAHLDGDTAISRWSFEAAMRAAGSVCEAVDKVIAGDLRNAFCAVRPPGHHAGPRGIVKCANDPEGGSHGFCLLNNV 627          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A7S2UJ04_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ04_9STRA)

HSP 1 Score: 289 bits (740), Expect = 8.880e-83
Identity = 185/507 (36.49%), Postives = 253/507 (49.90%), Query Frame = 1
Query:  346 DIEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSK-ERLNCRPLHLAA--------LGGHVGATRALITAGCD-----TSISNL-------------------------------------------HGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIP-DTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRSGG----DPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            D+ ERD++  TPLHVA+ ++KL+  RLLLE GA   ++ +GS P H+A+S+ ++  H  FA   +KLL EH  D   KDD   T L+LA        ++  L   GG   ++ + +R+  R LH AA        +    G  + L T         +S+SN+                                           +G T LH+A  +  W V R LL  G A+  A ++    P  LA K G+ IP D LP L+       +   + NG+                      PAGST                              ++L H LC  H +CPPI R  G    +PPPENV+RL V+ N+D G+LR  EF    W++   RA ++DVLRVH++ Y++++   CA IP+    ++ LDGDTAVS  SFEAA+RAAGSVC+AVD+VM+G  RN+FCAVRPPGHHAG RG+V C ND +GSHGFCLLNNV
Sbjct:  289 DLNERDEDENTPLHVAIHSRKLEHVRLLLEAGASIHRKCDGSFPIHVAISIGAIPAHASFAYECVKLLQEHGADFFTKDDSMHTPLYLACVTNQVRLVSLFLADTGGMGTLNVRCDRVGGRVLHAAARFDDNSRAIARPSGTHKRLTTDDLQPHAPTSSVSNMNQSQGSEAEVVEKQEEKQPLDTSALITQVLLAVPEIEVDPQNNYGRTPLHVATMRGNWPVVRQLLHAG-ANPDAIDRRGYKPGGLARKRGMVIPNDLLPVLE-------NSPPSGNGSTPRDLI--------------IDPAGST------------------------------LLLCHELCNRHKTCPPIARGTGIASSEPPPENVRRLHVLINEDVGILRCSEFDGCSWETEARRAAISDVLRVHEYSYVERISHACAQIPDHPSAIAQLDGDTAVSRWSFEAALRAAGSVCEAVDKVMSGDFRNSFCAVRPPGHHAGPRGIVKCANDPEGSHGFCLLNNV 743          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A448Z0Y3_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0Y3_9STRA)

HSP 1 Score: 276 bits (705), Expect = 3.880e-78
Identity = 168/506 (33.20%), Postives = 250/506 (49.41%), Query Frame = 1
Query:  349 IEERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSK-ERLNCRPLHLAA---------------LGGHVGATRA--------------------------------------------LITAGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNKQNPAALALKLGLRIPDTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRSGGD-PPPENVKRLEVIYNKDSGVLRAEEFSSLEWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQG-SHGFCLLNNV 1680
            + ERD++  TP+HVA+  +KL+  +LL + GA   K+ +GSPP H+A+S+ ++ +HR FA   +++L +H+ D++ KDD   T L LA  + L E ++ +L    G   ++++ +R   R LH+AA                 GH                                                  L T   +T   N  G T LH+AC +  W V R+LL  G + A A ++    P   A K G+ IP+ L +                G P        R  +                                     + P   T+V+ H LC  H +CPPIRR   D PPPENV+RL+V+ +K++G+LR  EF   +W++   RA L DVL+ H++ Y++ + ++C++IP+    +++LD DT +S  SFEAA+RAAGSVC+AVD+V++G ++NAFC VRPPGHHAG RG+V C ND  G SHGFC LNNV
Sbjct:  250 LNERDEDENTPIHVAIHCQKLEHVKLLCKAGASLIKKSDGSPPIHVAISMGAIPKHREFAIECVRVLYKHEADLAAKDDALHTPLSLACMYNLPEIVSFILSTDVGSSTINARADRSQGRALHMAAKFDTVIANAKRTAVATKGHARVAHVHHPDGSVVNAMHQIPGFPGKQADRSTDVTSSIQNPTQETVTEILLNTPDIETDAQNSVGQTPLHVACARGNWNVVRLLLKKGASTAIA-DRRGFTPGQHAHKRGMPIPNDLLKTL-------------GGPPSSGIIPPPRDLI-------------------------------------VDPDNNTIVITHELCGLHRTCPPIRRGSNDEPPPENVRRLKVLVDKETGILRTGEFGRCKWENEGRRAALVDVLKCHEYSYVESISQMCSSIPDHPSAVANLDADTTMSRWSFEAALRAAGSVCEAVDKVVSGDHQNAFCVVRPPGHHAGPRGIVRCDNDPDGGSHGFCFLNNV 704          
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Match: A0A7S2DAK1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAK1_9STRA)

HSP 1 Score: 269 bits (688), Expect = 3.060e-77
Identity = 169/458 (36.90%), Postives = 240/458 (52.40%), Query Frame = 1
Query:  340 DVDI----EERDQEGCTPLHVALAAKKLDAARLLLECGAGTTKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTLLHLAASFGLEEAMATLLQAPGGKELMDSKERLNCRPLHLAALGGHVGATRALITAGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARA-----CNKNKQNPAALALKLGLRIPDTLPELQPGGGGRGDDNVASNGAPXXXXXXXARGKVKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHHPLCLEHHSCPPIRRSGGDP-PPENVKRLEVIYNKDSGVLRAEEFSSL-EWDSNPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQGSHGFCLLNNV 1680
            DVD     E+ D +  TPLHVA+  + + A ++LL  GA   ++  G    H+AL +     H+  +   L++LL    D++ KDD G+T LH+A   G +  +   L   GGK L++ K+R   RPLH+A+  GH+   + L+  G D S     GNT LH A     W+VA VL +  +           N+  ++    A+  G+ IP+ +  +  G   R  D   +NG+                                      HE             K KTVV+ HPLC+EHH+C  I R    P PPENVKRLEV+ +   GVLR++   S+  W  +  +A + DVLRVHD  Y+  L++ C+ IP+E+  ++ +DGDT VS+ S+ A+++AAG VC AVDRV  G +RNAFCAVRPPGHHAG+RG+V  G +  GS GFCLLNNV
Sbjct:    9 DVDFFFVNEKDDLDLNTPLHVAILERNVPAMKILLASGADVNRKCNGITAMHVALFLGRFSAHQEASREMLEMLLAETPDLTAKDDGGRTALHVACEIGFDVQIIDQLVDCGGKNLVEIKDRTGMRPLHVASAHGHLAIVQRLLELGVDASAVTTLGNTPLHYALVGRNWSVAIVLAEQYRVTRNGEALAITNRRGRSAGEAAISQGIDIPERVAAVLEG---RPCDVNETNGS--------------------------------------HEV--------GCCDKKKTVVITHPLCMEHHTCTRIVRGHHTPYPPENVKRLEVLCDVLIGVLRSDRLLSMTSWCEDAPKAYMGDVLRVHDHAYVSMLQKTCSKIPDET--IASMDGDTTVSNKSYLASLQAAGCVCAAVDRVCGGASRNAFCAVRPPGHHAGSRGVVEGGVEKHGSMGFCLLNNV 415          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5659.14008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE7.410e-21863.96Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A7S1B8G6_9STRA2.310e-9539.16Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A835YM84_9STRA1.200e-9240.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Q0M5_9STRA1.710e-8937.71Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S2LK53_9STRA2.640e-8937.96Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A4D9CRN0_9STRA8.360e-8739.65Hist_deacetyl domain-containing protein n=2 Tax=Mo... [more]
A0A1Z5J6P1_FISSO1.770e-8435.87Hist_deacetyl domain-containing protein n=2 Tax=Fi... [more]
A0A7S2UJ04_9STRA8.880e-8336.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448Z0Y3_9STRA3.880e-7833.20Hist_deacetyl domain-containing protein n=1 Tax=Ps... [more]
A0A7S2DAK1_9STRA3.060e-7736.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5659contigL-elsbetiae_contig5659:1520..11597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score612.8
Seed ortholog evalue1.6e-172
Seed eggNOG ortholog2880.D8LR52
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHistone deacetylase domain with ankyrin repeat
Ec32 orthologEc-06_004320.1
Exons9
Model size1680
Cds size1680
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.1144216-CDS-L-elsbetiae_contig5659:1519..17841622816602.1144216-CDS-L-elsbetiae_contig5659:1519..1784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 1520..1784 +
1691683677.3570626-CDS-L-elsbetiae_contig5659:1519..17841691683677.3570626-CDS-L-elsbetiae_contig5659:1519..1784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 1520..1784 +
1622816602.1260629-CDS-L-elsbetiae_contig5659:3022..32901622816602.1260629-CDS-L-elsbetiae_contig5659:3022..3290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 3023..3290 +
1691683677.371073-CDS-L-elsbetiae_contig5659:3022..32901691683677.371073-CDS-L-elsbetiae_contig5659:3022..3290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 3023..3290 +
1622816602.1398995-CDS-L-elsbetiae_contig5659:3925..40961622816602.1398995-CDS-L-elsbetiae_contig5659:3925..4096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 3926..4096 +
1691683677.380405-CDS-L-elsbetiae_contig5659:3925..40961691683677.380405-CDS-L-elsbetiae_contig5659:3925..4096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 3926..4096 +
1622816602.150268-CDS-L-elsbetiae_contig5659:5210..53541622816602.150268-CDS-L-elsbetiae_contig5659:5210..5354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 5211..5354 +
1691683677.3895795-CDS-L-elsbetiae_contig5659:5210..53541691683677.3895795-CDS-L-elsbetiae_contig5659:5210..5354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 5211..5354 +
1622816602.1602445-CDS-L-elsbetiae_contig5659:5946..60281622816602.1602445-CDS-L-elsbetiae_contig5659:5946..6028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 5947..6028 +
1691683677.3989348-CDS-L-elsbetiae_contig5659:5946..60281691683677.3989348-CDS-L-elsbetiae_contig5659:5946..6028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 5947..6028 +
1622816602.1753876-CDS-L-elsbetiae_contig5659:6758..71271622816602.1753876-CDS-L-elsbetiae_contig5659:6758..7127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 6759..7127 +
1691683677.4103422-CDS-L-elsbetiae_contig5659:6758..71271691683677.4103422-CDS-L-elsbetiae_contig5659:6758..7127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 6759..7127 +
1622816602.1857889-CDS-L-elsbetiae_contig5659:8239..83571622816602.1857889-CDS-L-elsbetiae_contig5659:8239..8357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 8240..8357 +
1691683677.4203928-CDS-L-elsbetiae_contig5659:8239..83571691683677.4203928-CDS-L-elsbetiae_contig5659:8239..8357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 8240..8357 +
1622816602.1956174-CDS-L-elsbetiae_contig5659:9619..97491622816602.1956174-CDS-L-elsbetiae_contig5659:9619..9749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 9620..9749 +
1691683677.4292948-CDS-L-elsbetiae_contig5659:9619..97491691683677.4292948-CDS-L-elsbetiae_contig5659:9619..9749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 9620..9749 +
1622816602.2065294-CDS-L-elsbetiae_contig5659:11464..115971622816602.2065294-CDS-L-elsbetiae_contig5659:11464..11597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 11465..11597 +
1691683677.4381034-CDS-L-elsbetiae_contig5659:11464..115971691683677.4381034-CDS-L-elsbetiae_contig5659:11464..11597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5659 11465..11597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5659.14008.1prot_L-elsbetiae_contig5659.14008.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5659 1520..11597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5659.14008.1

>prot_L-elsbetiae_contig5659.14008.1 ID=prot_L-elsbetiae_contig5659.14008.1|Name=mRNA_L-elsbetiae_contig5659.14008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=560bp
MATSSDDGSFSQYHHPYPLHDAAEAGDIETLSSILRPPKRDASRPSLELP
AAAEGGGGGANEEGGGATATGGGEDAGRGQAREGGGHSNGGSNMNVDGGG
GGGDADSDGFRGPDVDIEERDQEGCTPLHVALAAKKLDAARLLLECGAGT
TKRLEGSPPAHIALSVASVGRHRGFADAALKLLLEHQHDVSVKDDRGQTL
LHLAASFGLEEAMATLLQAPGGKELMDSKERLNCRPLHLAALGGHVGATR
ALITAGCDTSISNLHGNTALHLACTKARWAVARVLLDLGKADARACNKNK
QNPAALALKLGLRIPDTLPELQPGGGGRGDDNVASNGAPAAAAAASARGK
VKKKPQWQFAPAGSTRAESGEAVSVEHEAKGDGGAGGAMVPKAKTVVLHH
PLCLEHHSCPPIRRSGGDPPPENVKRLEVIYNKDSGVLRAEEFSSLEWDS
NPSRAELTDVLRVHDFKYIQKLERLCANIPNESGELSHLDGDTAVSHSSF
EAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCGNDAQG
SHGFCLLNNV
back to top

mRNA from alignment at L-elsbetiae_contig5659:1520..11597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5659.14008.1 ID=mRNA_L-elsbetiae_contig5659.14008.1|Name=mRNA_L-elsbetiae_contig5659.14008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10078bp|location=Sequence derived from alignment at L-elsbetiae_contig5659:1520..11597+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACTTCCTCCGATGACGGGTCCTTCAGCCAGTACCACCACCCCTA TCCGCTGCACGACGCGGCCGAGGCCGGAGACATCGAGACGCTCTCGAGCA TCCTGAGGCCCCCGAAGAGGGACGCTAGCAGGCCGTCGCTGGAGCTGCCC GCAGCGGCAGAGGGGGGGGGCGGGGGCGCAAACGAGGAGGGCGGCGGCGC CACGGCAACGGGGGGCGGGGAAGACGCTGGTCGCGGACAGGCAAGGGAAG GGGGCGGACATTCCAGTAGCTTTTCGTGTCCAGAGATAATAAAAGTCCTT TGACGGGTGTGCGTTGTGTGTGTGTGTGTGTGTGTGTCGGCTGGTGTGTG TGTGTGTGTTTTTTTTTTTCAACGAATGTTAATGTTCTACTCCGGAGTGT GCACCAATGTCAGCGGTCTGCGTACACCGGAGCATGTATAAATATCAGCG GTCTACGTATTTCTGTGATACCTGCGAAAAAAAATCGTTCCGGGGGGGCT GTGCTTTTAGGCACGCTGTTTTCACCATCTGGACCGACTTTTAGAGCTCC ATTACCCTGTAACGAAGAGGGTGCCAGCACCAAACGACACATTTTCGGAC AGCCCTCGACTAGATCTTTCCAACGCCACCCCTTTTGGCAGTGGCGTTCT TCTTGCTGGGGAGGAATCGAGCTTTGAAAAATTGTCCAGAGGGTGTGGTA TCTTGTGTCACCTACGGTATGTAGGCACGCTGTTTTCATCACCTTTTTAT TAAGGGAGAGGGGTGACGCGGTCGGGGGGGGGGGATGGGAGTGAGTGCCT ATAACGTGTGGTTTAAAAAAAATACACAATGAATCAAAGATGGAACCTAC CCACACTAGAGCAAGGAGTCGATATGGGGTTCAAACGGTACTCCATACAG AGACGTAATATTTGGCGAAGCTTTGCTGGTCAATAAACCCTGTATAGAAG CCAACCCAACCAAAAGCGGAGCCCGCGAGATGGGTACGGCGGCAGCAACC TCTGCCTGTTCCATGGCAAACGCTTGGAATCGGGCATCGCAGAAATAGAC TAGGCCTGAAAACTTGCTCTTAAGCTAAACCCAGTACAGCAGTAGTAGCG GTTGGTTGTCCAATATGTAGGGTGTGTTTTTTTCCGGAGGGCGTCACACA AGAGTCCGCGTTGGGAACTTCACCTATTTTATAAAATAAAACAAAGAATC AAAGATGGAACCTAGCCCATACTAGAGAAAAGACTCGATATGGGGTTCAA ACGGTATTCCATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAACA ACCTAAATATCAGAAGAACTCAACATCTCCCCTGCTAAGATTTAGATTTG CGAGGTCGGCCAACAATTTTCCAGCTGGTAGAGCCCACCGTGATGCTATT TCTCCAAGGCGCAACCGCCGACAGCAGCCGTAACCCAGAAGCCCCCGCCC GACCCAACCCCCCCCAAAAAAACAACAACTCCGAAAACAGGCCGAAGGCC AAGACGGCGGCAGCAACATGAACGTCGACGGCGGCGGTGGTGGCGGCGAC GCCGACAGCGACGGTTTCAGGGGGCCCGACGTTGACATCGAGGAAAGGGA CCAGGAGGGGTGCACCCCGCTCCACGTGGCTCTCGCGGCCAAGAAGCTTG ACGCCGCCCGGCTGCTGCTTGAGTGCGGGGCGGGCACGACCAAGCGCCTG GAGGGATCGCCGCCGGCGCACATCGCCCTCAGCGTGGCGTCGGTTGGGCG GCACCGCGGTTTCGCCGACGCGTGAGTGGCATATGTAGGTATCTACCTAC CTGCAATTACGTACCCCATCTCTCGCTAGCGCCGGTTGTTGTTGTGGAGG CGAGGCGGTGGGGGGGAGGGGAGGAGGAGGGGGAAGGCAGAGGGTTAGTT GGTGGTGGTGGTGACTTGGTGAAGAATGGATGCAAAACTCTGTTGTAGAG TGTCTATCTGCTCTGGAGTCGTTTTTTTTTGCCCACAGCGTGGAGCATGG GCCGTTGTGTCTGCAAACCCCCATCCTCCTTCTTATGTGCGCACGGCGTC TTTAAATGGCGCACGCAATCGCGGTGCGACGCTAGCATCGCCGGCTGATA TCTGCGGCTATATATCGCCGCCGCCCGACAACGACGAGCCACAGATATTG CTGTCAGGTCATCCGGAGTTTTAGAGTGTTGGTGCCGTGTTTTGTGTCTC GTTCATCCTCGATGGTGAACACCGCGTCACTCCTGGCTGAACGCCAACGC TCTTCATCGAGATGCTTGTTACGTTCCAATGGGGACGAACCCCTATGTGT TGCGGTTCTTAGTCGCGAGCCCCCCCCCCCCCCACCCCACTCCAACTGCA ACGGCTGCAACACATACATATGTACGTGCCACCGCAACACGACGGACGGA CTCCAGCGCCCTGAAGCTACTGCTCGAGCACCAGCACGACGTCTCCGTCA AGGATGACCGGGGGCAGACCCTGCTGCACCTTGCGGCGTCGTTCGGCCTC GAGGAAGCGATGGCGACCCTCCTGCAAGCGCCCGGGGGAAAGGAGCTCAT GGACTCGAAGGAGCGCCTCAACTGCCGGTCAGTTCCATATGTGGTGTGAA CTGTAATAAAGGTCGTACTGTGTACTGCTGTAGAGAGCAACAAAAATGAA AATATATATATATATATATATGCCACTGTTGCGGTTGCTACGCAGCGACC AAAAGATGGCGCGCTGCTTTTCTAGATTTGCTCGTACCCTCGTCTATCAT CCGAGCGCTGGTAAACGTGAGGGTATCCGCGAGAAAAAAAAAGAACAACA AAAGGGTGAATTCGGCTTGATCTGCATGGCTGTGCGTGTACATTGGTTGG TTGGTGCCTCTGGTGGTGCCTCTTGTGTCCTGGGCATCGTTTTCTTGCGT TCCCCGTTCTCATTTTCCGCTTTTCCCCAGTTCCATTTCCGCTCTCATTT TGATTTCTGCTTTTTTTCGTCTCGCATCTGATTGGTCGAGGAGGGAGGAG AGGCCCAGGGGCAACTTGTCCGGATACACAGAATAGGTAAATGGTTGAAT CGTCGACCAATGAAAACGGCAACGGGGCTGTCAACACCAGCTAGATACAT GCATAGATCATGCTCATGCTTATGTTCAAGGCCGAGATCGGGTGAGCACG GCGGATAACGTAAAAAGGAGGTGGTTACCTCCCGTAGCCTAGCGAATCCA TCCCGGCCCCCCCCCCCGTACGTACTACTTCGAGAGTATGCGGTGCAATA TGGTGTCTGCAGCCATGGGCCACAAGACCGACCGCCGAAAAAGTGCGGCG AGATAACAGCGAACGGCTTGGTTGGTGTAGTTCGCACGGATAGCGTTAAA CAGCAGCGATACCACGGGCGTCAGGAAAGGAGCCATGTTTCGCACGAGAC ACCCACCGCTTGTATACCTGCCCTTGTGCTTTTGCCAATAGATGGCGGGT AACTTCTCTTGGCCGAACTTCTCTAGCCAGGAAGCCCCCCCCCCCCCCCA GATCCCCAACGTATCAAGGCACCGGTCAAAGCATAGAAGGGCCTGCTCAG TGCGCTGCGATGAAACTGTTTTGGCATGCGGCATTCAGAACTATCCAAAG CATGCGTGCGTGCGTGCGTGCGTTTGTGCGTGCGTGCGTGCGTGCGTGCA TGCGTGTTTCAAACATGCCATCCCCCCCCCCCGTTGAACAGGCCTCTGCA TCTCGCGGCGCTTGGGGGGCACGTGGGAGCTACCAGGGCGCTGATCACGG CGGGCTGCGACACCTCTATCAGCAACCTCCACGGGAACACGGCGCTCCAC CTGGCGTGCACCAAGGCGCGCTGGGCCGTGGCCAGGTATGTGTGTATGCT GCTGCCCGTGATGCTGCTGCTGCGGCCTGTTGTAGATGACGCTGTGGATG TGTGTTTACGTGTCGTAGCAAAGCACATCTAGAGCTGACCAGGTATGCTG CTGCTGCTTTGGTTGTTGATGATGCTGTTGATGTTTGTTTTCTGTCATTT GCATGATGTGAGCGTACTGAAAGCATAGTACGTAGTGTGCTGAAAACGGC CTCCCATGTCCAGAGGAGACGAGATACGTGAGACCGAGCGAACTGGGGAA ATCAAGTCAACACGCGCACTAGTGCTGCTGTGTGATTGGGATCTCTTACT TGCAGTCTACGCGGACGCCATTTAAGTCCCAGCCCAGATAGTACACCTGC GATGACCCCGTTTCCAAGCTGGTTGTTAGCGGTGAGACTCGCGTATTTTT CCGGTGGAACTTTTTCCCGTGGAACTTTTTGTGCGTCTGGGTGTGTGCGC GCGAGAGTGCGTGCGCGCGCCTTGCTGTGTTTTCCTCTTTCCATCATTGA GAACCGTTAAGAGGGCGTTTTTTTGCCTTGCGTGTTCTCTTGCCCTGGTC GCATCCCTTTTCGCAACCGGACTTCAGGGTGCTGCTGGACCTCGGGAAGG CCGACGCACGGGCGTGCAACAAGAACAAGCAGAACCCGGCCGCGCTGGCC TTGAAGCTGGTGAGAGGCGAGGGAGAAGAGACGGGCCGGCAGCAGCCCCA TGGGCTTTCGCGTGGCTATATTCTGACCTAACCTATCAGCCCGGCTGTAT CTTTTCAATCTACACCCGCCTGATTCTCACATAACGTATCTCTGCCTACG ATATATTCTCATGTCACTGCTGGGTCCTATCGCTACTTGCTCTGAACGGT TGGACCCTTCCTGCAGCAGCCCCCCCCCCCCCCAAATCTTAAAACATAAA AAAGTGCCTGTGGGGAATTTTTGACTTCATTTCCTAGATAAATACTACCC CCCGCTCTGCCCTCACAGCTCCTTTTGTAGAATTGGGGGACTCTATTACA GGAAGCCTATGAGGCTGCGGTCGACATGTAGCCTGTTTTGTCTTGGTACC TAGCATGTCTCTTGGTGGCATATCTTGCCGGCTGTTTTCGGTGAGTTGGA TGCCGGCGCGGGCTTGTGGTGACGTTTTTTTTTACTCTTTTTCCCTCCCA TCAGACTATTGGCATATTTGTCGTCTGCCCCACTGGCCCCCTTCCTCCAC TACGACTAGCTAGACGACCCAACCGTGTGATGTGATGTGATGTGATGCGA TTTGATGTGGGCTGTCTGTGGGGAGTAGTCCTCGCGAACCCATCCACGGC CCACGCAATAATATTGCTGTTCAATAAAACGGCGATTTAATATTCGCGGT TGACTTGGATTTTTACTTCTGGCGCCTGACCTACAACAGGGGCTGAGAAT CCCGGACACGCTGCCGGAACTCCAGCCGGGCGGCGGGGGGAGGGGCGACG ATAACGTAGCCAGCAACGGTGCCCCCGCAGCCGCCGCCGCCGCCTCCGCC AGGGGCAAGGTCAAGAAGAAGCCCCAGTGGCAGTTCGCGCCGGCGGGATC GACAAGGGCGGAGAGCGGAGAGGCAGTCAGCGTTGAGCACGAGGCGAAGG GGGATGGTGGGGCGGGGGGGGCGATGGTTCCCAAGGCCAAGACGGTGGTG CTGCACCACCCCCTGTGTCTGGAGCACCACTCGTGCCCGCCCATCAGGAG GTCGGGAGGGGACCCACCCCCGGAGAACGTGAAACGGCTGGAGGTGATTT ACAACAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGT GTGTGTGCGTGTGTGGTCTGTGTGTGGGTTTGCTACAGGTGTGTGATGGC GGGTGTGTGTGGTCTGTGTGTGAGAGAGAGTGTGAGTGTGAGTGTGAGTG TGTGAGTGTGAGTATGTGTGTGAGTGTGTGCGTGTGTGTGTGTGTGCGTG TGTGGTCTGTGTGTGGGTTTGCTAGAAGTGTGTGATGACGAGTGTGTGTG GTGTGTGTGTGTGATCTGTGCGAGGGTTTGCTGGAGGTGTGTGTCGTGTG CGTGTGGGGGACCTTGTGTGGTGGTTTGCTAGGTGTTGTTGCTGTTGTTT TTCACATTGCTCTCTAGTCCAAAACACCCTTGGGGGCCCGTGGTCACAAA CCAAGGCACACTCGACGCCGCGGAGGAAAAATATAGGTGTGTGGTGGCGT GGTTGTGGCGGAACGGTACACAGCGTGTCTTCGGCTCTGGCCGTCGGTAG GGGGTTACGTAGTGGGGCTGTGCTTCGGTACCGGTGACCCACGATCAATC AACGAATCAGAACACGAGCTTTTGTACCGCTTTCGAAAGATAAATCTGAT CATCGAAACGGAACTTAACTTAAGTAGCCCGCATTGCAGACGGGACTCCC TGGGATTCAACCGGTATTCAACCGGTATTCGATATTGTTGAAAAACAGGC GAGAACCTCGATTCGTCGCCTTTCCAGGCCCGATCGGGGGTTTCGTAACT CGGGAGGGAAAATTTCTTCTTGGGCGTCCTGCACTGACTACTGGCTGCTG TTGTGGTGTTTCCGTTTTTTTGGGTTCCTTTCCCTCTTCACACCAATGCG ATTAATCAGCCAATCGAGCCCTCTAACTTAGTTGAGCTAGAGATAAGTAC ACCCACCCGCTCAACTTTTTTGGGCCTCTTCTGCTGGTGTAAACACTGGT ATATTTGTGCGTGTATCTTGTGTGTATTGTATTTTTTGTGTGTATCTTGT GTGTGTGTTTTTTTTTGTGGGTATCTTGTGTGTATCTTTTGTGTGCATCA TGGCTTCGCGGCGTGAACACTGCCTTGTCTCGTCTGGCTTGACTCCTGGC TGAATACTACGTGAGGACAGGACTCCGGAGTGCTGCGCGCGGAGGAATTC TCGTCGTTGGAGTGGGACAGCAACCCCAGCCGGGCGGAGCTGACGGACGT CCTCAGGGTGCACGACTTCAAGTACATCCAGAAGCTCGGTGCGCGATTCT TGACACCTTTTTGACCGTGACGATGTTTTTTTTTTGCGTTGTGTCATTTG GCCCTTGCTCCTGCCCTTTTTGCTGTCGCTTTCCTGCTGCTCTCTTGCGT GTGTGTGTGTACGTTTTAGATGTGACGCCGGTTGGTCCTAGTTGTACAGA CAAATGCACTGCAAAGTGTAGTACCTCTAAGTATACCGCAAGGTGTAGTA CACGTCTCCACTTTGGGGGACTGTCGCCAAATTACATGGGAAGGACACAC ACACACACACACACACAACGCGGTTCGTGCGTGCGCGTGTTGTGGTGCTT ATTACAGTAGGTGACACAAGATACCACCCCCCCCGGGACATATTTTCAAA GCGTGATTCCTCCATAGCGAATAGGGCGCCAGCACCAAAGTACCCCTTTT CGGACAGCCATGAACTAAATCCTTCCAACGCCACCCCCTTAAGACACTGG CACTCTTCTTCTTGCTGGAGAGGAGTCGAGCTTTGAAGATCTGTCCAGGG GGGGTGGTACCGTGTGTCACCTACGGTACATGAAGACACTCGCTGCCTTG TTTGCAGTCACCATTTGTTGATCGTATCTGGACCTCTCTGTCGAGCCGTG TGCGTGCATGCGCGGCAGTGAGTGCATCACGTGACGAAGTGTAGACGGGA CTACACGGCTGGCCGGATTGCCGAACCTTGTCGTTACTTCACTTTCTCTA TCTATCTATCTATCTCTGGTTCGGTTAGACGCAAGTTTGCTGTGTTTTTA TCCACCCATAAGCGCAAGGGCAGGTGTACATATATAGATCGGAAGAGAGA GAGAGGCTTGTCTTGGCTTTGTTCGCGTCCTTGGCTTTTTGGTTGCCCTG CTGGTTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGCTGTTGTTGTTACATAGCGGCAATGTGTCAGCGTTTAGTTGTCGA AGCGAGAGCGACCCTTCCGCTGCCGCTGTCCAAATCCCAGGAGTGAGATA AAGCTTGCTTTCTCAAAAAGTGTCGAGATGCGCAAGGGGGGTAGATGAAC GGTGTGTGATAACCGGTTTTATGTACCGCGTACTTCCCTCCCACGTTTTA CAGGTAAGTTCTCTGCCGAAGATCCCCCCGCATGTCGTGTAACCCTCCCT ACCCACGCCTCGCTCTTCGGTACCCCCCTTCTTCCTCTCTCTCTTCTTTT CCCTGACCCTCGACCTCCCGCCTCATTCTATGTAACTCCCCCTCACGCAG AACGCCTCTGCGCGAACATCCCCAACGAGTCTGGCGAGCTGTCCCACCTC GATGGCGACACGGCCGTGTCTCACAGCTCGTTCGAGGCCGCTATGCGCGC CGCCGGCTCCGTGTGCGACGCCGTCGACAGGTGAAGCGGGGCCACAGGGT TACGCGATATCATACATATGTACACGCCGGGAAAAGTACATTTGCGTGTT TTTTTCTTTTTTTTTCCTCCCATGATTAGCATACTTCGTCGTCTGCCCCA CCCACTGCCCCCCATACTTCACTACAACTAGCTAGACGACCCAACCGGGG TCGCAAGTAGTGTGAGAGTGGTTATGTTTGTATCTGATCGTTTCAAGCCG CAGAAGCCGTGATCCTCTTTCTTTGGGACATATTAATCTCCGCCGACAGG AATCACGACCCCCCCTTCCACAATTGGTTCCACTGTTGGGTACCACCCTC ATATAGGTTCGGATCACAAAACAAACGTCCGTCGAGGACGAAACCCTCTT TTCCACAATGGCGTCGACGCCGAGCTCGAATGTCACCATCATGGTTTATT TTGTCGAGTCTTCTTGTCTAGCAACCAAAAGAAAAATACTCGAAAAAGAG GGGGGGGGTAATGTGGGTACCACCTTCATAAGGGTCGGATCACACAACAA ACGTCCGTCGAGGAGGAAACCCTCTTTTCCACCATGGCGTCGACGAAGAG ATGCCGGTTTTTGGTGGACACAACACCCTTTTTTCTTACCACCGCCGTTG CCCTCTACCACTCTCGTGTAACTGATATGCGCAAGTTTTGTATGGAACCG GACGCGGGAGGGTACATCTCAAGAGTCTTCCGAGTTAAAACGTGGTGCTT GTGTAGTATGGTATGATACATGTCCTGGGGCAGGAAGTGCGAACGCTTTC ACTTTTTATTTCATTAAAGTTTTATGAGACATCTATTGCCAGCACTATAA TAGAGGCTCCTTGCCACGAAGGACATTTTGCCAGAGGACTGACCCGTGAT CGCACAGAAGGGTTCCCCTCCCCGAGGCCCCCACACCCCCCTTCTGCGGT GCTTTCCCCCCTTCTGCAGAGCTTTCCCCCCTTAAGATTTTTAATGGATG TATACTGTTGTAGACAGTCCCGTTGACAGTCCCCACTCCCCCCCTTCTGC GGTGCTTTCCCCCCTTCTGCAGAGCTTGCCCCCCTTCTGCAGAGCTTTCC CCCCTTAAGATTTTTAATGGATGTATACTGTTGTAGACAGTCCCGTTGAC AGTCCCGTTGACAGTCCCCACTCCCCCCCTTCTGCGGTGCTTTCCCCCCT TAAGATTTTTCATCGCGAGACAAGTTCAGTCATCCCGTTTCCTCGCCGAC GGTGAGGTCGAAGTCTACTTCCACTGCTTACTCCTTTTTCGAACAGCAGT GCGGACACACAATAAAACTTGCGCGCGAAGTTACCACGGGAGTTCCCTTT CTAGACACTGCGGACATCAAAAACTATATGTAACACTTGCACGAAATTAC GTTGCGCAGAACTTTTTAAATACACTTATACAAAGACCCCCAGTCCGGAC GCCGATCCTGAAGGACAATCCAGGGGGTGAAGCCAGAGAGAGAACAAATG TATGCTATGTGGTACGTAGGCATGGTGCACATATGTCTGTGTGTGTGTGT GTTTTTGTTTTTCTTCTTTTTCACATTTATTTCCTGGGCTCGATGGGCTC CTTGTCACGAGGACACCTTGCCAGAGAGTACTGTACCGTGTGTATGCCTC CTTGATAATATTTTGGAGTACAATACTTACTTGTCGAGTACTTTTTACGA CGCGGAAAACGGTGGTGGCGCGAAACGAATCCGAAACCGAAACAGGGTGA TGACGGGTCGGAACAGAAACGCCTTCTGCGCGGTAAGACCCCCGGGCCAC CACGCCGGCACCCGTGGGCTGGTCACCTGCGGCAACGACGCGCAGGGGTC GCACGGCTTCTGCCTCCTCAACAACGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5659:1520..11597+

>mRNA_L-elsbetiae_contig5659.14008.1 ID=mRNA_L-elsbetiae_contig5659.14008.1|Name=mRNA_L-elsbetiae_contig5659.14008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3360bp|location=Sequence derived from alignment at L-elsbetiae_contig5659:1520..11597+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACTTCCTCCGATGACGGGTCCTTCAGCCAGTACCACCACCCCTA
TCCGCTGCACGACGCGGCCGAGGCCGGAGACATCGAGACGCTCTCGAGCA
TCCTGAGGCCCCCGAAGAGGGACGCTAGCAGGCCGTCGCTGGAGCTGCCC
GCAGCGGCAGAGGGGGGGGGCGGGGGCGCAAACGAGGAGGGCGGCGGCGC
CACGGCAACGGGGGGCGGGGAAGACGCTGGTCGCGGACAGGCAAGGGAAG
GGGGCGGACATTCCAATGGCGACTTCCTCCGATGACGGGTCCTTCAGCCA
GTACCACCACCCCTATCCGCTGCACGACGCGGCCGAGGCCGGAGACATCG
AGACGCTCTCGAGCATCCTGAGGCCCCCGAAGAGGGACGCTAGCAGGCCG
TCGCTGGAGCTGCCCGCAGCGGCAGAGGGGGGGGGCGGGGGCGCAAACGA
GGAGGGCGGCGGCGCCACGGCAACGGGGGGCGGGGAAGACGCTGGTCGCG
GACAGGCAAGGGAAGGGGGCGGACATTCCAACGGCGGCAGCAACATGAAC
GTCGACGGCGGCGGTGGTGGCGGCGACGCCGACAGCGACGGTTTCAGGGG
GCCCGACGTTGACATCGAGGAAAGGGACCAGGAGGGGTGCACCCCGCTCC
ACGTGGCTCTCGCGGCCAAGAAGCTTGACGCCGCCCGGCTGCTGCTTGAG
TGCGGGGCGGGCACGACCAAGCGCCTGGAGGGATCGCCGCCGGCGCACAT
CGCCCTCAGCGTGGCGTCGGTTGGGCGGCACCGCGGTTTCGCCGACGCAC
GGCGGCAGCAACATGAACGTCGACGGCGGCGGTGGTGGCGGCGACGCCGA
CAGCGACGGTTTCAGGGGGCCCGACGTTGACATCGAGGAAAGGGACCAGG
AGGGGTGCACCCCGCTCCACGTGGCTCTCGCGGCCAAGAAGCTTGACGCC
GCCCGGCTGCTGCTTGAGTGCGGGGCGGGCACGACCAAGCGCCTGGAGGG
ATCGCCGCCGGCGCACATCGCCCTCAGCGTGGCGTCGGTTGGGCGGCACC
GCGGTTTCGCCGACGCCGCCCTGAAGCTACTGCTCGAGCACCAGCACGAC
GTCTCCGTCAAGGATGACCGGGGGCAGACCCTGCTGCACCTTGCGGCGTC
GTTCGGCCTCGAGGAAGCGATGGCGACCCTCCTGCAAGCGCCCGGGGGAA
AGGAGCTCATGGACTCGAAGGAGCGCCTCAACTGCCGCGCCCTGAAGCTA
CTGCTCGAGCACCAGCACGACGTCTCCGTCAAGGATGACCGGGGGCAGAC
CCTGCTGCACCTTGCGGCGTCGTTCGGCCTCGAGGAAGCGATGGCGACCC
TCCTGCAAGCGCCCGGGGGAAAGGAGCTCATGGACTCGAAGGAGCGCCTC
AACTGCCGGCCTCTGCATCTCGCGGCGCTTGGGGGGCACGTGGGAGCTAC
CAGGGCGCTGATCACGGCGGGCTGCGACACCTCTATCAGCAACCTCCACG
GGAACACGGCGCTCCACCTGGCGTGCACCAAGGCGCGCTGGGCCGTGGCC
AGGCCTCTGCATCTCGCGGCGCTTGGGGGGCACGTGGGAGCTACCAGGGC
GCTGATCACGGCGGGCTGCGACACCTCTATCAGCAACCTCCACGGGAACA
CGGCGCTCCACCTGGCGTGCACCAAGGCGCGCTGGGCCGTGGCCAGGGTG
CTGCTGGACCTCGGGAAGGCCGACGCACGGGCGTGCAACAAGAACAAGCA
GAACCCGGCCGCGCTGGCCTTGAAGCTGGGTGCTGCTGGACCTCGGGAAG
GCCGACGCACGGGCGTGCAACAAGAACAAGCAGAACCCGGCCGCGCTGGC
CTTGAAGCTGGGGCTGAGAATCCCGGACACGCTGCCGGAACTCCAGCCGG
GCGGCGGGGGGAGGGGCGACGATAACGTAGCCAGCAACGGTGCCCCCGCA
GCCGCCGCCGCCGCCTCCGCCAGGGGCAAGGTCAAGAAGAAGCCCCAGTG
GCAGTTCGCGCCGGCGGGATCGACAAGGGCGGAGAGCGGAGAGGCAGTCA
GCGTTGAGCACGAGGCGAAGGGGGATGGTGGGGCGGGGGGGGCGATGGTT
CCCAAGGCCAAGACGGTGGTGCTGCACCACCCCCTGTGTCTGGAGCACCA
CTCGTGCCCGCCCATCAGGAGGTCGGGAGGGGACCCACCCCCGGAGAACG
TGAAACGGCTGGAGGTGATTTACAACAAGGGGCTGAGAATCCCGGACACG
CTGCCGGAACTCCAGCCGGGCGGCGGGGGGAGGGGCGACGATAACGTAGC
CAGCAACGGTGCCCCCGCAGCCGCCGCCGCCGCCTCCGCCAGGGGCAAGG
TCAAGAAGAAGCCCCAGTGGCAGTTCGCGCCGGCGGGATCGACAAGGGCG
GAGAGCGGAGAGGCAGTCAGCGTTGAGCACGAGGCGAAGGGGGATGGTGG
GGCGGGGGGGGCGATGGTTCCCAAGGCCAAGACGGTGGTGCTGCACCACC
CCCTGTGTCTGGAGCACCACTCGTGCCCGCCCATCAGGAGGTCGGGAGGG
GACCCACCCCCGGAGAACGTGAAACGGCTGGAGGTGATTTACAACAAGGA
CTCCGGAGTGCTGCGCGCGGAGGAATTCTCGTCGTTGGAGTGGGACAGCA
ACCCCAGCCGGGCGGAGCTGACGGACGTCCTCAGGGTGCACGACTTCAAG
TACATCCAGAAGCTCGGACTCCGGAGTGCTGCGCGCGGAGGAATTCTCGT
CGTTGGAGTGGGACAGCAACCCCAGCCGGGCGGAGCTGACGGACGTCCTC
AGGGTGCACGACTTCAAGTACATCCAGAAGCTCGAACGCCTCTGCGCGAA
CATCCCCAACGAGTCTGGCGAGCTGTCCCACCTCGATGGCGACACGGCCG
TGTCTCACAGCTCGTTCGAGGCCGCTATGCGCGCCGCCGGCTCCGTGTGC
GACGCCGTCGACAGAACGCCTCTGCGCGAACATCCCCAACGAGTCTGGCG
AGCTGTCCCACCTCGATGGCGACACGGCCGTGTCTCACAGCTCGTTCGAG
GCCGCTATGCGCGCCGCCGGCTCCGTGTGCGACGCCGTCGACAGGGTGAT
GACGGGTCGGAACAGAAACGCCTTCTGCGCGGTAAGACCCCCGGGCCACC
ACGCCGGCACCCGTGGGCTGGTCACCTGCGGCAACGACGCGCAGGGGTCG
CACGGCTTCTGCCTCCTCAACAACGTGGGTGATGACGGGTCGGAACAGAA
ACGCCTTCTGCGCGGTAAGACCCCCGGGCCACCACGCCGGCACCCGTGGG
CTGGTCACCTGCGGCAACGACGCGCAGGGGTCGCACGGCTTCTGCCTCCT
CAACAACGTG
back to top