mRNA_L-elsbetiae_contig5652.14000.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5652.14000.1
Unique NamemRNA_L-elsbetiae_contig5652.14000.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5652.14000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5652contigL-elsbetiae_contig5652:8148..8661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5652.14000.1prot_L-elsbetiae_contig5652.14000.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5652 8175..8555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.5489323-UTR-L-elsbetiae_contig5652:8147..81741622816601.5489323-UTR-L-elsbetiae_contig5652:8147..8174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5652 8148..8174 +
1691683676.988873-UTR-L-elsbetiae_contig5652:8147..81741691683676.988873-UTR-L-elsbetiae_contig5652:8147..8174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5652 8148..8174 +
1622816601.5775042-UTR-L-elsbetiae_contig5652:8555..86611622816601.5775042-UTR-L-elsbetiae_contig5652:8555..8661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5652 8556..8661 +
1691683677.0208964-UTR-L-elsbetiae_contig5652:8555..86611691683677.0208964-UTR-L-elsbetiae_contig5652:8555..8661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5652 8556..8661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.5630903-CDS-L-elsbetiae_contig5652:8174..85551622816601.5630903-CDS-L-elsbetiae_contig5652:8174..8555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5652 8175..8555 +
1691683677.007636-CDS-L-elsbetiae_contig5652:8174..85551691683677.007636-CDS-L-elsbetiae_contig5652:8174..8555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5652 8175..8555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5652.14000.1

>prot_L-elsbetiae_contig5652.14000.1 ID=prot_L-elsbetiae_contig5652.14000.1|Name=mRNA_L-elsbetiae_contig5652.14000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MAPPPKGGSVDRTCLAVGIVVDAYIHIIGVGFRAYVGSWRGMGEAQVQPV
AQAMPCSGNSSGHNRQEVGTWQTKYREAFTSHHAATRQTTKTDPLLNRTN
ITSLSPDYLRMVWNTEYRLNPAESSL*
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mRNA from alignment at L-elsbetiae_contig5652:8148..8661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5652.14000.1 ID=mRNA_L-elsbetiae_contig5652.14000.1|Name=mRNA_L-elsbetiae_contig5652.14000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=514bp|location=Sequence derived from alignment at L-elsbetiae_contig5652:8148..8661+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCAGTCTACCCGATCTCACACAACATGGCACCGCCCCCCAAAGGGGG
TTCCGTGGATCGAACTTGTCTTGCTGTCGGTATTGTTGTCGACGCGTATA
TACATATAATAGGAGTAGGGTTTCGGGCTTATGTAGGGTCATGGCGAGGT
ATGGGAGAAGCGCAAGTCCAGCCCGTCGCACAGGCCATGCCATGTAGTGG
AAACTCCTCGGGACACAACAGGCAAGAGGTCGGAACATGGCAAACAAAAT
ACAGAGAGGCGTTTACAAGTCATCATGCGGCAACAAGACAAACAACAAAG
ACTGACCCACTGCTAAACAGGACCAATATTACATCTTTGTCACCAGACTA
TTTACGCATGGTATGGAATACGGAATACCGGTTGAATCCCGCGGAGTCCA
GTCTCTGATGTGGGAAAGGTCCCATTTTTGATTGAAAATGGTTTTTCTTT
CACCAACAAGGACTGGAAACCCACTAAAATATGTCGGACCAATATAACAT
CTATGTCACAAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5652:8148..8661+

>mRNA_L-elsbetiae_contig5652.14000.1 ID=mRNA_L-elsbetiae_contig5652.14000.1|Name=mRNA_L-elsbetiae_contig5652.14000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig5652:8148..8661+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACCGCCCCCCAAAGGGGGTTCCGTGGATCGAACTTGTCTTGCTGT
CGGTATTGTTGTCGACGCGTATATACATATAATAGGAGTAGGGTTTCGGG
CTTATGTAGGGTCATGGCGAGGTATGGGAGAAGCGCAAGTCCAGCCCGTC
GCACAGGCCATGCCATGTAGTGGAAACTCCTCGGGACACAACAGGCAAGA
GGTCGGAACATGGCAAACAAAATACAGAGAGGCGTTTACAAGTCATCATG
CGGCAACAAGACAAACAACAAAGACTGACCCACTGCTAAACAGGACCAAT
ATTACATCTTTGTCACCAGACTATTTACGCATGGTATGGAATACGGAATA
CCGGTTGAATCCCGCGGAGTCCAGTCTCTGAATGGCACCGCCCCCCAAAG
GGGGTTCCGTGGATCGAACTTGTCTTGCTGTCGGTATTGTTGTCGACGCG
TATATACATATAATAGGAGTAGGGTTTCGGGCTTATGTAGGGTCATGGCG
AGGTATGGGAGAAGCGCAAGTCCAGCCCGTCGCACAGGCCATGCCATGTA
GTGGAAACTCCTCGGGACACAACAGGCAAGAGGTCGGAACATGGCAAACA
AAATACAGAGAGGCGTTTACAAGTCATCATGCGGCAACAAGACAAACAAC
AAAGACTGACCCACTGCTAAACAGGACCAATATTACATCTTTGTCACCAG
ACTATTTACGCATGGTATGGAATACGGAATACCGGTTGAATCCCGCGGAG
TCCAGTCTCTGA
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