mRNA_L-elsbetiae_contig5650.13997.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5650.13997.1
Unique NamemRNA_L-elsbetiae_contig5650.13997.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: D8LDG1_ECTSI (Dihydrodipicolinate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.790e-21
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEHLDGESTKKVGDVEGQLASGMPEEHPAGRAFHTCSLDSNN 207
            ITESHQSAKVD++GTAKALA+DFA L AE  D +S  KV D EGQLA G+PEEH AG AFHT SL SN+
Sbjct:  213 ITESHQSAKVDTSGTAKALAADFAKLTAEDYDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSND 281          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: A0A835ZG43_9STRA (Dihydrodipicolinate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG43_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.160e-11
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEHLDGEST-KKVGDVEGQLASGMPEEHPAGRAFHTCSLDSNN 207
            ITESHQS+K D++GTAKALA+DFA L     D ES    + D  GQ A G+PEE+  G AFH  SL S +
Sbjct:  160 ITESHQSSKADTSGTAKALANDFAVLTGAPFDVESEITMIRDAPGQKAFGVPEEYLGGHAFHMYSLRSGD 229          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: S8E035_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E035_9LAMI)

HSP 1 Score: 57.0 bits (136), Expect = 7.140e-8
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEHLDGESTKKVGDVEGQLAS-GMPEEHPAGRAFHTCSLDS 201
            +TESHQS K+D +GTAKA+ S F  L     D E  +K+ D E Q+   G+PEEH +G AFHT  L S
Sbjct:  152 VTESHQSGKLDVSGTAKAVVSCFNKLGVS-FDLEQVEKIRDRESQVEILGIPEEHLSGHAFHTYRLTS 218          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: Q00UJ4_OSTTA (Dihydrodipicolinate reductase, N-terminal n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q00UJ4_OSTTA)

HSP 1 Score: 56.2 bits (134), Expect = 1.410e-7
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEHLDGESTKKVGDVEGQLAS-GMPEEHPAGRAFHTCSLDS 201
            +TESHQS+K D++GTAKA+ + F  L  +  D    + V DVE Q    G+PEEH  G AFHT  L S
Sbjct:  161 VTESHQSSKKDTSGTAKAIVASFNDLGCD-FDVSQIELVRDVENQTGRMGVPEEHLLGHAFHTYRLTS 227          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: A0A2R5GJY4_9STRA (4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJY4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.280e-7
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKA-EHLDGESTKKVGDVEGQLASGMPEEHPAGRAFHTCSLDSNN 207
            ITESHQS K D++GTAKA+      LK  +  D E  KK+ + E Q A G+P E   G A+HT +L S +
Sbjct:  173 ITESHQSGKADTSGTAKAMVEYLNKLKGGDPFDVEDIKKLRESEAQQAFGVPAEALEGHAWHTYTLKSGD 242          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: A4S841_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S841_OSTLU)

HSP 1 Score: 54.7 bits (130), Expect = 5.350e-7
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEHLDGESTKKVGDVEGQLAS-GMPEEHPAGRAFHTCSLDS 201
            +TESHQS+K D++GTAKA+ + F  L     D    + V DVE Q    G+PEEH  G AFHT  L S
Sbjct:  175 VTESHQSSKKDTSGTAKAIVASFNDLGCG-FDLNDIELVRDVESQTGKMGVPEEHLLGHAFHTYRLTS 241          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: C1MYX7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MYX7_MICPC)

HSP 1 Score: 54.3 bits (129), Expect = 7.000e-7
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEHLDGESTKKVGDVEGQLAS-----GMPEEHPAGRAFHTCSLDS 201
            +TESHQS+KVD++GTAKA+   F  L       ++T  V DV  QLA      G+PEEH  G AFHT  L S
Sbjct:  154 VTESHQSSKVDTSGTAKAIVESFNALGCGFDIADATL-VRDVPTQLAPVPQGMGVPEEHLLGHAFHTYKLVS 224          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: B8LM55_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LM55_PICSI)

HSP 1 Score: 54.3 bits (129), Expect = 7.870e-7
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEH-LDGESTKKVGDVEGQLAS-GMPEEHPAGRAFHTCSLDS 201
            +TESHQS+K+D++GTAKA+ S F  L     LD    +KV D   Q+   G+PEE+  G AFHT S+ S
Sbjct:  230 VTESHQSSKIDTSGTAKAIVSSFQRLGVSFKLD--QIEKVRDPTEQIQKMGVPEEYLGGHAFHTYSVTS 296          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: C1E7M8_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E7M8_MICCC)

HSP 1 Score: 53.9 bits (128), Expect = 9.980e-7
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDFATLKAEHLDGESTKKVGDVEGQLAS-----GMPEEHPAGRAFHTCSLDS 201
            +TESHQS+KVD++GTAKA+   F  L     D +    V DV  Q+A      G+PEEH  G AFHT  L S
Sbjct:  161 VTESHQSSKVDTSGTAKAIVESFNELGCG-FDIKDAVLVRDVPTQIAPIPNGMGVPEEHILGHAFHTYRLTS 231          
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Match: A0A7S3FJ29_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FJ29_9VIRI)

HSP 1 Score: 52.4 bits (124), Expect = 2.430e-6
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 ITESHQSAKVDSTGTAKALASDF-ATLKAEHLDGESTKKVGDVEGQLAS-GMPEEHPAGRAFHTCSLDS 201
            + ESHQS KVD++GTAK L   F   L  E    +  + V D EGQL   G+P+E  +G A+HT  L S
Sbjct:   90 VVESHQSTKVDTSGTAKELVKSFNGMLGGEGFSNDDIEMVRDEEGQLGRMGVPKEALSGHAYHTYELTS 158          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5650.13997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG1_ECTSI4.790e-2171.01Dihydrodipicolinate reductase n=1 Tax=Ectocarpus s... [more]
A0A835ZG43_9STRA1.160e-1154.29Dihydrodipicolinate reductase n=1 Tax=Tribonema mi... [more]
S8E035_9LAMI7.140e-850.00Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
Q00UJ4_OSTTA1.410e-748.53Dihydrodipicolinate reductase, N-terminal n=2 Tax=... [more]
A0A2R5GJY4_9STRA5.280e-745.714-hydroxy-tetrahydrodipicolinate reductase 1, chlo... [more]
A4S841_OSTLU5.350e-748.53Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
C1MYX7_MICPC7.000e-748.61Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
B8LM55_PICSI7.870e-747.83Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
C1E7M8_MICCC9.980e-747.22Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S3FJ29_9VIRI2.430e-644.93Hypothetical protein n=1 Tax=Prasinoderma singular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5650contigL-elsbetiae_contig5650:7559..8647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.1e-17
Seed eggNOG ortholog2880.D8LDG1
KEGG rclassRC00478
KEGG koko:K00215
KEGG ReactionR04198,R04199
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.4-hydroxy-tetrahydrodipicolinate reductase
EggNOG OGs28HEW@1,2QPSY@2759
EC1.17.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size218
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.415286-CDS-L-elsbetiae_contig5650:7558..76721622816601.415286-CDS-L-elsbetiae_contig5650:7558..7672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 7559..7672 +
1691683676.9035017-CDS-L-elsbetiae_contig5650:7558..76721691683676.9035017-CDS-L-elsbetiae_contig5650:7558..7672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 7559..7672 +
1622816601.4256475-CDS-L-elsbetiae_contig5650:8545..86471622816601.4256475-CDS-L-elsbetiae_contig5650:8545..8647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 8546..8647 +
1691683676.9197345-CDS-L-elsbetiae_contig5650:8545..86471691683676.9197345-CDS-L-elsbetiae_contig5650:8545..8647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 8546..8647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5650.13997.1prot_L-elsbetiae_contig5650.13997.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5650 7559..8647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5650.13997.1

>prot_L-elsbetiae_contig5650.13997.1 ID=prot_L-elsbetiae_contig5650.13997.1|Name=mRNA_L-elsbetiae_contig5650.13997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
ITESHQSAKVDSTGTAKALASDFATLKAEHLDGESTKKVGDVEGQLASGM
PEEHPAGRAFHTCSLDSNNRV*
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mRNA from alignment at L-elsbetiae_contig5650:7559..8647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5650.13997.1 ID=mRNA_L-elsbetiae_contig5650.13997.1|Name=mRNA_L-elsbetiae_contig5650.13997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1089bp|location=Sequence derived from alignment at L-elsbetiae_contig5650:7559..8647+ (Laminarionema elsbetiae ELsaHSoW15)
ATCACGGAGTCCCACCAGTCTGCCAAGGTGGACTCAACAGGGACAGCCAA GGCTCTGGCCTCCGACTTCGCCACGCTAAAAGCAGAACACCTCGATGGAG AGTCCACCAAGAAGGTGCGGTGCGATCTCTACCCCTCTGAATTTGATTGG TTTGACACCCGATGCCGGTCGTTTCGGTGCTGGTTTAGTGGTTTGCTCGT TGACCTACAAACGGCAAGATCTATATTTCGGTTCCCAGTGGGGATGGTTC TTCCGCGACTTTGCAGTAGAAACCGACAAACGCTGAAACCCTCGTGAGAA CACAAACTTCGACTCCACCGTTGACGAGGGAAAGGGGCGGCTGAACCCTT CCCGGGATAAGGAACCCCACAAGCACCGCAGCAGGCAGGCGGGGGTATAA ACAAAGATGGACCGAAAAACAAAACCGTGTGGGCTCCCCCTCCCGCGTGA CCCCGGCTGGCACGTCTAGCCAGTTGTATAGAGTATATACACCTCGATGT GTACGTGCACTTACCCCGAAACGTGCGTGTGCACCGGAAGAGGGGAAGCC AGACTAGGCCAGAATAGACGGGATGAGAAAAATATCAAATGGTTTGTCGG TGTAAAATATGTCGGCGGTATGCGTACGGCTTGGCTCTGACCGGCCTTTT CTCGTGACGGTTAGCGGGTCCCGCATGCAGCGTGCGCGGTGCACTGTATA GTTCGCCGTGTATTGTCCGAGCTCGATGTTGTAGTTACGCCTGCAGTGTC GAGGCGGCGCTTGCAGTTGGACTCGCTCGTCATCCGTGTGTGGTCCCGTC GATGATTCCCTTGTCTATGTGTGTGTGTGTTTTCTTGCATCAGCTGTATC CCAAAATACCGGCCCGTGTGTGTGTGTTTCATTGTTTCCCTCTTCTTCTA GTGTGCGTTTTTCTCGATTGTCTTATTCGCTCAACTTTATGCGCCGGTTC TCTCGTTTCCGCCTGTTCTCCCGTTGCGTGTTTGAAGGTCGGCGATGTTG AGGGCCAGCTAGCCTCCGGAATGCCGGAGGAACACCCGGCCGGGCGCGCC TTCCACACCTGCAGCCTCGATAGCAACAACAGAGTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5650:7559..8647+

>mRNA_L-elsbetiae_contig5650.13997.1 ID=mRNA_L-elsbetiae_contig5650.13997.1|Name=mRNA_L-elsbetiae_contig5650.13997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig5650:7559..8647+ (Laminarionema elsbetiae ELsaHSoW15)
ATCACGGAGTCCCACCAGTCTGCCAAGGTGGACTCAACAGGGACAGCCAA
GGCTCTGGCCTCCGACTTCGCCACGCTAAAAGCAGAACACCTCGATGGAG
AGTCCACCAAGAAGATCACGGAGTCCCACCAGTCTGCCAAGGTGGACTCA
ACAGGGACAGCCAAGGCTCTGGCCTCCGACTTCGCCACGCTAAAAGCAGA
ACACCTCGATGGAGAGTCCACCAAGAAGGTCGGCGATGTTGAGGGCCAGC
TAGCCTCCGGAATGCCGGAGGAACACCCGGCCGGGCGCGCCTTCCACACC
TGCAGCCTCGATAGCAACAACAGAGTGTGAGTCGGCGATGTTGAGGGCCA
GCTAGCCTCCGGAATGCCGGAGGAACACCCGGCCGGGCGCGCCTTCCACA
CCTGCAGCCTCGATAGCAACAACAGAGTGTGA
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