mRNA_L-elsbetiae_contig5631.13976.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5631.13976.1
Unique NamemRNA_L-elsbetiae_contig5631.13976.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5631.13976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5631contigL-elsbetiae_contig5631:7742..9867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size1013
Cds size756
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5631.13976.1prot_L-elsbetiae_contig5631.13976.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5631 7742..9610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.4889774-CDS-L-elsbetiae_contig5631:7741..84711622816599.4889774-CDS-L-elsbetiae_contig5631:7741..8471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5631 7742..8471 -
1691683675.6188543-CDS-L-elsbetiae_contig5631:7741..84711691683675.6188543-CDS-L-elsbetiae_contig5631:7741..8471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5631 7742..8471 -
1622816599.502676-CDS-L-elsbetiae_contig5631:9584..96101622816599.502676-CDS-L-elsbetiae_contig5631:9584..9610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5631 9585..9610 -
1691683675.630912-CDS-L-elsbetiae_contig5631:9584..96101691683675.630912-CDS-L-elsbetiae_contig5631:9584..9610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5631 9585..9610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.5181558-UTR-L-elsbetiae_contig5631:9610..98671622816599.5181558-UTR-L-elsbetiae_contig5631:9610..9867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5631 9611..9867 -
1691683675.6402361-UTR-L-elsbetiae_contig5631:9610..98671691683675.6402361-UTR-L-elsbetiae_contig5631:9610..9867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5631 9611..9867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5631.13976.1

>prot_L-elsbetiae_contig5631.13976.1 ID=prot_L-elsbetiae_contig5631.13976.1|Name=mRNA_L-elsbetiae_contig5631.13976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MGSSSRRGRPFPQGTVVPAFVVLASTAAAATEASAGFLPTVARSTAFATA
SPGASSVHSRCSSSCGESISGRRTTSSNSSSGSRLNSSRSGGGVLESGIE
PANHPARGRGVRRRRGADVPTASAGRHRSAALFPPSSPSFASSPPLGSFC
SSGSRDRYAGGAVRMRSVNSTAGWRGAAAAIGLPWNGALHGDGRVAQSLS
SSRLAGSPTALPEDTSSAPRSNGPKQTAAAASPSDRDGLAGGGAEGERDG
GV
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mRNA from alignment at L-elsbetiae_contig5631:7742..9867-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5631.13976.1 ID=mRNA_L-elsbetiae_contig5631.13976.1|Name=mRNA_L-elsbetiae_contig5631.13976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2126bp|location=Sequence derived from alignment at L-elsbetiae_contig5631:7742..9867- (Laminarionema elsbetiae ELsaHSoW15)
TGCACCGCACGTTAATGTTACAGGTAAAGTCGTCTCGCTTTTGACGCAAC
AAGCACCTTTGCCGGCCGAATATAGAGTGTTTCTGAGAAGGGGCGTCTTA
TTTGAGGTGTTTCGGCATACGGGGGTCTGAAAGGAGTTGATGCCGGAAAG
AGTTGTTGAAGTGCACGCTCACTGAGCCGACAGGTACCGCGTCAGCAGGC
CACCTCATCACCGTAACCGAGCGCGTTGGTGGCCTCTCTTGCTAAGTGGC
AACCGCAATGGGGAGCAGTTCGCGACGTGGAAGGTGAGACATGCGCTTGA
GCTCCTATTTTGTGTAGTGTGAGGTAAACGTGAGCTACAGCAGCCCAGTT
CCGAGTTCTGATGCCGCATCTCTGCCAGCTCGTCCATGTACGTCAACCTC
ATCACGCTCCCCCCGCGCCCGCCGTTCACGCTCTCGCACGTGCCTTCATC
CCGGCTACCTCATGAAGAGTGTTGACTCTACGACAAGTGCTTGTATTTTC
GTGTGAATATGACCCCAACGCTCCATTGCCCGTTCTTACATACATGCCAG
AAAACACGGGGTCAGATCGGCATGCGATATTCGCTGTGCTCCGACCTGTA
CGTTGGTGTGCGTTGACTCCCCGCCAGCATGATAGTTATAGTTCCGGTGG
TCAGCTCTCAACTCAACGCGTGCAGGTGTCTTGTGATAAAATGGATGCTG
CCGAAAGCCCCATTGGTGTTACGCTTCGGAGGAGTGTATATAATAGGAGT
ACATGTCTGCGAAAGGTGGGGCTCGGCCTTGCATTACTAATCAGCAACAT
CGGCCCCGGCTCTGCCCAATCACCGCAGCGCTGGGTCATTTTCACTCTCA
AGTTGACCTTTGCGACACACTTTGTTTGCCCAACCCCTGTTCCTCTGTTT
GTTCAAACCAGACCGCTGCGCGATTGACGGTATAGATAGAAATGAAACCG
CAGAAAACCAGGAAAAGATGCTGAACAGCGCCGCCGTTCGAGTAGACTCT
CTTTCCCCCCCTATCTATATGTATACCCTCTCGCTGCCTTCACACCCGCC
GGGCGGAGTTCCAGTAGTCTACGCGGGGTTTTTGTCTTGAGTTAACATAT
GGGATAAAGTACGGAAACCGTTTGGGGGGGTCGGTGGTTGGGGTTAGGGT
TAGAGTTAGTAGTATAAAATTAATTTCTGCGTAGGCGGTCCCGGAGTTCG
TACACGCTGGAGGGCGAGGGGTGGCGGTTCTCCTTTGGAGTCACCCTTTT
AGGTTCAACGTGCATGACGTTCAAGGTAGCAGAACTAGAACTTTGTCCAT
GTTTTTGACGGGGGGGGGGTTAGAAAGGCCAGGACTGGTTGGTCTAACCT
GCTTACCGCCGCCGCCCGCCCCCATCCCCGCCGCCCATCGTCCCAGACCT
TTCCCCCAAGGAACGGTGGTGCCAGCCTTTGTCGTGCTGGCATCCACCGC
CGCTGCAGCGACGGAAGCGTCCGCGGGCTTTCTTCCGACGGTGGCTAGGA
GTACCGCTTTCGCCACCGCGTCACCTGGTGCTAGCAGCGTCCACAGTAGA
TGTAGCTCCTCCTGCGGTGAGAGCATCAGCGGCAGAAGGACGACGAGCAG
CAACAGCAGCAGTGGCAGCAGACTGAACAGCAGTAGGAGTGGGGGTGGCG
TGCTAGAGTCCGGCATCGAGCCTGCGAACCACCCAGCACGAGGACGGGGT
GTTCGGCGTAGGCGGGGTGCCGATGTTCCCACCGCTTCTGCCGGACGACA
TCGCTCGGCAGCGCTCTTCCCGCCGTCTTCGCCGTCCTTCGCGTCCTCGC
CTCCTCTGGGCTCGTTCTGCAGCAGCGGTTCACGCGACCGATATGCCGGC
GGAGCGGTGAGGATGCGGTCGGTAAACTCCACCGCCGGTTGGCGCGGGGC
AGCTGCTGCGATCGGGTTGCCGTGGAACGGGGCACTCCACGGGGACGGCA
GGGTCGCGCAGTCATTGTCGTCGTCGCGGCTGGCCGGCAGTCCGACCGCG
CTGCCCGAGGACACAAGCTCGGCTCCAAGGAGCAACGGCCCCAAGCAAAC
CGCCGCCGCCGCATCGCCGAGCGATCGCGACGGCCTTGCTGGTGGTGGGG
CGGAGGGCGAACGAGATGGAGGTGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5631:7742..9867-

>mRNA_L-elsbetiae_contig5631.13976.1 ID=mRNA_L-elsbetiae_contig5631.13976.1|Name=mRNA_L-elsbetiae_contig5631.13976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig5631:7742..9867- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAGCAGTTCGCGACGTGGAAGATGGGGAGCAGTTCGCGACGTGGA
AGACCTTTCCCCCAAGGAACGGTGGTGCCAGCCTTTGTCGTGCTGGCATC
CACCGCCGCTGCAGCGACGGAAGCGTCCGCGGGCTTTCTTCCGACGGTGG
CTAGGAGTACCGCTTTCGCCACCGCGTCACCTGGTGCTAGCAGCGTCCAC
AGTAGATGTAGCTCCTCCTGCGGTGAGAGCATCAGCGGCAGAAGGACGAC
GAGCAGCAACAGCAGCAGTGGCAGCAGACTGAACAGCAGTAGGAGTGGGG
GTGGCGTGCTAGAGTCCGGCATCGAGCCTGCGAACCACCCAGCACGAGGA
CGGGGTGTTCGGCGTAGGCGGGGTGCCGATGTTCCCACCGCTTCTGCCGG
ACGACATCGCTCGGCAGCGCTCTTCCCGCCGTCTTCGCCGTCCTTCGCGT
CCTCGCCTCCTCTGGGCTCGTTCTGCAGCAGCGGTTCACGCGACCGATAT
GCCGGCGGAGCGGTGAGGATGCGGTCGGTAAACTCCACCGCCGGTTGGCG
CGGGGCAGCTGCTGCGATCGGGTTGCCGTGGAACGGGGCACTCCACGGGG
ACGGCAGGGTCGCGCAGTCATTGTCGTCGTCGCGGCTGGCCGGCAGTCCG
ACCGCGCTGCCCGAGGACACAAGCTCGGCTCCAAGGAGCAACGGCCCCAA
GCAAACCGCCGCCGCCGCATCGCCGAGCGATCGCGACGGCCTTGCTGGTG
GTGGGGCGGAGGGCGAACGAGATGGAGGTGTCACCTTTCCCCCAAGGAAC
GGTGGTGCCAGCCTTTGTCGTGCTGGCATCCACCGCCGCTGCAGCGACGG
AAGCGTCCGCGGGCTTTCTTCCGACGGTGGCTAGGAGTACCGCTTTCGCC
ACCGCGTCACCTGGTGCTAGCAGCGTCCACAGTAGATGTAGCTCCTCCTG
CGGTGAGAGCATCAGCGGCAGAAGGACGACGAGCAGCAACAGCAGCAGTG
GCAGCAGACTGAACAGCAGTAGGAGTGGGGGTGGCGTGCTAGAGTCCGGC
ATCGAGCCTGCGAACCACCCAGCACGAGGACGGGGTGTTCGGCGTAGGCG
GGGTGCCGATGTTCCCACCGCTTCTGCCGGACGACATCGCTCGGCAGCGC
TCTTCCCGCCGTCTTCGCCGTCCTTCGCGTCCTCGCCTCCTCTGGGCTCG
TTCTGCAGCAGCGGTTCACGCGACCGATATGCCGGCGGAGCGGTGAGGAT
GCGGTCGGTAAACTCCACCGCCGGTTGGCGCGGGGCAGCTGCTGCGATCG
GGTTGCCGTGGAACGGGGCACTCCACGGGGACGGCAGGGTCGCGCAGTCA
TTGTCGTCGTCGCGGCTGGCCGGCAGTCCGACCGCGCTGCCCGAGGACAC
AAGCTCGGCTCCAAGGAGCAACGGCCCCAAGCAAACCGCCGCCGCCGCAT
CGCCGAGCGATCGCGACGGCCTTGCTGGTGGTGGGGCGGAGGGCGAACGA
GATGGAGGTGTC
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