mRNA_L-elsbetiae_contig5631.13975.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5631.13975.1
Unique NamemRNA_L-elsbetiae_contig5631.13975.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5631.13975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5631contigL-elsbetiae_contig5631:7020..7760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size743
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.5470288-CDS-L-elsbetiae_contig5631:7019..77601622816599.5470288-CDS-L-elsbetiae_contig5631:7019..7760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5631 7020..7760 +
1691683675.6541789-CDS-L-elsbetiae_contig5631:7019..77601691683675.6541789-CDS-L-elsbetiae_contig5631:7019..7760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5631 7020..7760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5631.13975.1prot_L-elsbetiae_contig5631.13975.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5631 7020..7760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5631.13975.1

>prot_L-elsbetiae_contig5631.13975.1 ID=prot_L-elsbetiae_contig5631.13975.1|Name=mRNA_L-elsbetiae_contig5631.13975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=247bp
FPSGPTLSDPPVLTSTPSNVGPRALPPSGCAAIAGDGVDPAACPCAIATT
PRPTASLAATVPSAPLARIAAGAGSATAVARSGRSAPLLCTSAASPLLST
LLLLPAPAAPVLPRRMTGGRSTPARLPALMPSGEGEEARPPPPRERWSDD
DAGGGGGSTDGRARPPAPPEPVVSAAASAARSRCWRLPASGACCWGGRGA
GTGPPRDRASSPSSAPSSTGHNTEYATAALAAAAAAATAAATPPSRS
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mRNA from alignment at L-elsbetiae_contig5631:7020..7760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5631.13975.1 ID=mRNA_L-elsbetiae_contig5631.13975.1|Name=mRNA_L-elsbetiae_contig5631.13975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=741bp|location=Sequence derived from alignment at L-elsbetiae_contig5631:7020..7760+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCCTTCAGGGCCGACTCTCTCCGACCCCCCCGTGCTAACCTCGACACC
GTCAAATGTAGGACCCCGCGCGTTGCCGCCGAGCGGCTGCGCAGCCATCG
CCGGCGACGGCGTCGATCCGGCCGCTTGCCCCTGCGCCATCGCCACGACT
CCGAGACCGACCGCTTCTCTGGCCGCCACCGTCCCATCTGCTCCGTTGGC
CCGGATCGCGGCGGGAGCGGGGTCGGCAACGGCCGTCGCCAGGTCAGGCC
GTAGTGCGCCCCTGCTGTGTACTTCGGCAGCGTCGCCGTTGCTCTCAACA
CTGCTGCTGCTGCCTGCGCCGGCGGCGCCCGTGCTACCCCGCCGCATGAC
CGGCGGCCGCTCAACGCCGGCACGGCTGCCGGCACTCATGCCGTCAGGTG
AGGGGGAAGAAGCCAGACCGCCGCCGCCCCGCGAACGCTGGTCTGATGAC
GACGCCGGCGGCGGCGGCGGCAGCACCGACGGCCGTGCAAGACCTCCAGC
ACCCCCCGAGCCCGTCGTCTCTGCCGCGGCTTCCGCGGCGCGTTCTCGCT
GCTGGCGTCTTCCCGCCTCCGGGGCTTGCTGTTGGGGTGGCCGTGGCGCA
GGCACTGGTCCTCCAAGAGACAGAGCGAGCAGCCCGTCATCCGCGCCGTC
CAGCACCGGGCACAACACCGAGTACGCCACGGCCGCGCTGGCAGCGGCGG
CGGCAGCGGCGACGGCGGCGGCGACACCTCCATCTCGTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5631:7020..7760+

>mRNA_L-elsbetiae_contig5631.13975.1 ID=mRNA_L-elsbetiae_contig5631.13975.1|Name=mRNA_L-elsbetiae_contig5631.13975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1482bp|location=Sequence derived from alignment at L-elsbetiae_contig5631:7020..7760+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCCTTCAGGGCCGACTCTCTCCGACCCCCCCGTGCTAACCTCGACACC
GTCAAATGTAGGACCCCGCGCGTTGCCGCCGAGCGGCTGCGCAGCCATCG
CCGGCGACGGCGTCGATCCGGCCGCTTGCCCCTGCGCCATCGCCACGACT
CCGAGACCGACCGCTTCTCTGGCCGCCACCGTCCCATCTGCTCCGTTGGC
CCGGATCGCGGCGGGAGCGGGGTCGGCAACGGCCGTCGCCAGGTCAGGCC
GTAGTGCGCCCCTGCTGTGTACTTCGGCAGCGTCGCCGTTGCTCTCAACA
CTGCTGCTGCTGCCTGCGCCGGCGGCGCCCGTGCTACCCCGCCGCATGAC
CGGCGGCCGCTCAACGCCGGCACGGCTGCCGGCACTCATGCCGTCAGGTG
AGGGGGAAGAAGCCAGACCGCCGCCGCCCCGCGAACGCTGGTCTGATGAC
GACGCCGGCGGCGGCGGCGGCAGCACCGACGGCCGTGCAAGACCTCCAGC
ACCCCCCGAGCCCGTCGTCTCTGCCGCGGCTTCCGCGGCGCGTTCTCGCT
GCTGGCGTCTTCCCGCCTCCGGGGCTTGCTGTTGGGGTGGCCGTGGCGCA
GGCACTGGTCCTCCAAGAGACAGAGCGAGCAGCCCGTCATCCGCGCCGTC
CAGCACCGGGCACAACACCGAGTACGCCACGGCCGCGCTGGCAGCGGCGG
CGGCAGCGGCGACGGCGGCGGCGACACCTCCATCTCGTTCGTTTCCTTCA
GGGCCGACTCTCTCCGACCCCCCCGTGCTAACCTCGACACCGTCAAATGT
AGGACCCCGCGCGTTGCCGCCGAGCGGCTGCGCAGCCATCGCCGGCGACG
GCGTCGATCCGGCCGCTTGCCCCTGCGCCATCGCCACGACTCCGAGACCG
ACCGCTTCTCTGGCCGCCACCGTCCCATCTGCTCCGTTGGCCCGGATCGC
GGCGGGAGCGGGGTCGGCAACGGCCGTCGCCAGGTCAGGCCGTAGTGCGC
CCCTGCTGTGTACTTCGGCAGCGTCGCCGTTGCTCTCAACACTGCTGCTG
CTGCCTGCGCCGGCGGCGCCCGTGCTACCCCGCCGCATGACCGGCGGCCG
CTCAACGCCGGCACGGCTGCCGGCACTCATGCCGTCAGGTGAGGGGGAAG
AAGCCAGACCGCCGCCGCCCCGCGAACGCTGGTCTGATGACGACGCCGGC
GGCGGCGGCGGCAGCACCGACGGCCGTGCAAGACCTCCAGCACCCCCCGA
GCCCGTCGTCTCTGCCGCGGCTTCCGCGGCGCGTTCTCGCTGCTGGCGTC
TTCCCGCCTCCGGGGCTTGCTGTTGGGGTGGCCGTGGCGCAGGCACTGGT
CCTCCAAGAGACAGAGCGAGCAGCCCGTCATCCGCGCCGTCCAGCACCGG
GCACAACACCGAGTACGCCACGGCCGCGCTGGCAGCGGCGGCGGCAGCGG
CGACGGCGGCGGCGACACCTCCATCTCGTTCG
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