mRNA_L-elsbetiae_contig5609.13943.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5609.13943.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI) HSP 1 Score: 515 bits (1326), Expect = 1.410e-164 Identity = 362/554 (65.34%), Postives = 386/554 (69.68%), Query Frame = 1 Query: 1 MPVKVIYRRPSKVRRLLLRVRVASLTLRLADAARLRKVGTGPEVLGGTMPWGLGPPRGHPILSLRLDGAMLAMVVREASGRRGGGGSGLGGHGVMTEGAITLTVASVRAEGSDAGVDKSRGVMLPILAVSP-KPPLRRRRDGSG----------NGDANVTTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGSGLEIAAKWTLEPLHGGXXXXXXXXXXXXDTGFPTKSGPRRRRSGNAGSSAAARGQGR-GXAXRGGEVGVGLVKRSMDIRVGRLELWPDPPVLGRISHLIRATVGAKDLSRGLSRRERARKLRRERGLSERPPGGEGALWPPVGDPLEELTELVWPSSELPALVVQLSVEEAACLLSFHGRALSELQLKRGLTIGVETYRPGLARRAMECRGLLRGLLLWDRTGSASGELACIISGLEGPHPSALKPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDEAETGGVELQWLFTGRV 1626 MPVKVIYRRPSKVRRLLLRVRV+SLTLRLADAARL+KVGTG EVLG TMPWGL PPRGHPIL+LRLDGAMLAMVVRE G MTEGAITLTVAS+RAEGSDAGVDK+RGVMLPILAVSP +PP RR G+A T + XXXXXXXXXXXXXXXXXXXXXXXXXXX S GLEI+AKWTLEPLHGGXXXXXXXXXXXX R G+ G++A + G GR G GGEVGVGLVKRSMDIRVGRLELWPDPPVLGRISHLIRATVGAKDLSRGLSRRER R+ RRERGL+ERPPGGEGA+WPPV DP+EELTELVWPSSELPAL V +SV+EAACLLSFHGR LSELQL+RGLTIGVET+R GL RRAMECRGLLRGLLLWDRTGSASGELACIIS L+GPHPSALKPA XXXXXX + EA GVELQWLFTGR+ Sbjct: 1 MPVKVIYRRPSKVRRLLLRVRVSSLTLRLADAARLKKVGTGAEVLGSTMPWGLDPPRGHPILALRLDGAMLAMVVRE---------------GRMTEGAITLTVASIRAEGSDAGVDKARGVMLPILAVSPGRPPARRGSKSXXXXXXXXXXXXEGEARANTADDSFAADIGEASXXXXXXXXXXXXXXXXXXXXXXXXXXXPSA---------------------------------SPARGLEISAKWTLEPLHGGXXXXXXXXXXXXXXXX---------RRGSIGATANSGGGGRVGVREAGGEVGVGLVKRSMDIRVGRLELWPDPPVLGRISHLIRATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIISSLDGPHPSALKPATAAAAXXXXXXASAPVEGSAADAEFLEGGDRAAFLLPR-------GSAEAGNRGVELQWLFTGRI 490
BLAST of mRNA_L-elsbetiae_contig5609.13943.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE) HSP 1 Score: 432 bits (1111), Expect = 3.140e-131 Identity = 345/629 (54.85%), Postives = 376/629 (59.78%), Query Frame = 1 Query: 1 MPVKVIYRRPSKVRRLLLRVRVASLTLRLADAARLRKVGTGPEVLGGTMPWGLGPPRGHPILSLRLDGAMLAMVVREASGRRGGGGS------------------------------------------------------------------------GLGG----HGVMTEGAITLTVASVRAEGSDAGVDKSRGVMLPILAVSP-KPPLRRRRDGS----------GNGDANVTTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGSGLEIAAKWTLEPLHGGXXXXXXXXXXXXDTGFPTKSGPRRRRSGNAGSSAAARGQGRGXAXRGGEVGVGLVKRSMDIRVGRLELWPDPPVLGRISHLIRATVGAKDLSRGLSRRERARKLRRERGLSERPPGGEGALWPPVGDPLEELTELVWPSSELPALVVQLSVEEAACLLSFHGRALSELQLKRGLTIGVETYRPGLARRAMECRGLLRGLLLWDRTGSASGELACIISGLEGPHPSALKPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDEAETGGVELQWLFTGRV 1626 MPVKVIYRRPSKVRRLLLRVRV+SLTLRLADAARL+KVGTG EVLG TMPWGL PPRGHPIL LRLDGA+LAMVVREASGRRG GG G GG G MTEGAITLTVAS+RAEGSDAGVDK+RGVMLPILAVSP +PP RR GS G G+A T + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S GLEI+AKWTLEPLHGGXXXXXX RR R G+ G+++ + G G V R+ + G PV G++ ++ ATVGAKDLSRGLSRRER R+ RRERGL+ERPPGGEGA+WPPV DP+EELTELVWPSSELPAL V +SV+EAACLLSFHGR LSELQL+RGLTIGVET+R GL RRAMECRGLLRGLLLWDRTGSASGELACIISGL+GPHPSALKPA XXXXXXXXXX + EA GVELQWLF GR+ Sbjct: 831 MPVKVIYRRPSKVRRLLLRVRVSSLTLRLADAARLKKVGTGAEVLGSTMPWGLDPPRGHPILELRLDGAVLAMVVREASGRRGAGGDVGRKGTGXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTTSLPRLPSSGRRFERGGDARAAPSPAFLGAGGGGRAQGRMTEGAITLTVASIRAEGSDAGVDKARGVMLPILAVSPGRPPARRGSKGSDDGHRCAGGGGEGEARANTADDSFAADIGEASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSA-----------------------------SPAGGLEISAKWTLEPLHGGXXXXXX---------XXXXXARRRSRRGSFGATSNSNS---------GMCGQHRVLRASPVAGGFT------PV-GKVFNVEWATVGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSFHGRPLSELQLRRGLTIGVETFRQGLGRRAMECRGLLRGLLLWDRTGSASGELACIISGLDGPHPSALKPATAAXXXXXXXXXXSAPVESSAADAGFLEGGETAAFLLPRE------SAEAGNRGVELQWLFAGRI 1399 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5609.13943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5609.13943.1 >prot_L-elsbetiae_contig5609.13943.1 ID=prot_L-elsbetiae_contig5609.13943.1|Name=mRNA_L-elsbetiae_contig5609.13943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=542bp MPVKVIYRRPSKVRRLLLRVRVASLTLRLADAARLRKVGTGPEVLGGTMPback to top mRNA from alignment at L-elsbetiae_contig5609:6082..12028+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5609.13943.1 ID=mRNA_L-elsbetiae_contig5609.13943.1|Name=mRNA_L-elsbetiae_contig5609.13943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5947bp|location=Sequence derived from alignment at L-elsbetiae_contig5609:6082..12028+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5609:6082..12028+ >mRNA_L-elsbetiae_contig5609.13943.1 ID=mRNA_L-elsbetiae_contig5609.13943.1|Name=mRNA_L-elsbetiae_contig5609.13943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3252bp|location=Sequence derived from alignment at L-elsbetiae_contig5609:6082..12028+ (Laminarionema elsbetiae ELsaHSoW15)back to top |