mRNA_L-elsbetiae_contig559.13909.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig559.13909.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI) HSP 1 Score: 127 bits (319), Expect = 9.770e-32 Identity = 81/116 (69.83%), Postives = 87/116 (75.00%), Query Frame = 3 Query: 3 CLRIMRVVEFESAMHDNAGGGA-TTAAGDPPTAEDSEAFRAIDRTGGDADEAGLRSGDEAAPAPPPLPGSDRPRTERATERIGRLLVTLCREKSAGVGEQIKPHLPGLLSLAVSAY 347 CLRIMRVVEFESAM D GGG TTAAG +F A D GGD DEA SGDEA P+P G DRP+T+RATERIG+LLVTLC +KSAGVGEQIKPHLPGLLSLAVSAY Sbjct: 295 CLRIMRVVEFESAMRDGTGGGGGTTAAG---------SFGAGD--GGD-DEA---SGDEARPSPSLPEGDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAY 395
BLAST of mRNA_L-elsbetiae_contig559.13909.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE) HSP 1 Score: 113 bits (283), Expect = 7.040e-27 Identity = 71/115 (61.74%), Postives = 78/115 (67.83%), Query Frame = 3 Query: 3 CLRIMRVVEFESAMHDNAGGGATTAAGDPPTAEDSEAFRAIDRTGGDADEAGLRSGDEAAPAPPPLPGSDRPRTERATERIGRLLVTLCREKSAGVGEQIKPHLPGLLSLAVSAY 347 CLRIMRVVEFESAM D GG +F A D GGD + SGDEA P+P DRP+T+RATERIG+LLVTLC +KSAGVGEQIKPHLPGLLSLAVSAY Sbjct: 348 CLRIMRVVEFESAMRDGTGGXXXX--------XXXGSFGAGD--GGDDEP----SGDEARPSPSLPEDDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAY 448 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig559.13909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig559.13909.1 >prot_L-elsbetiae_contig559.13909.1 ID=prot_L-elsbetiae_contig559.13909.1|Name=mRNA_L-elsbetiae_contig559.13909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp MRVVEFESAMHDNAGGGATTAAGDPPTAEDSEAFRAIDRTGGDADEAGLRback to top mRNA from alignment at L-elsbetiae_contig559:29785..30131+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig559.13909.1 ID=mRNA_L-elsbetiae_contig559.13909.1|Name=mRNA_L-elsbetiae_contig559.13909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=347bp|location=Sequence derived from alignment at L-elsbetiae_contig559:29785..30131+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig559:29785..30131+ >mRNA_L-elsbetiae_contig559.13909.1 ID=mRNA_L-elsbetiae_contig559.13909.1|Name=mRNA_L-elsbetiae_contig559.13909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig559:29785..30131+ (Laminarionema elsbetiae ELsaHSoW15)back to top |