mRNA_L-elsbetiae_contig556.13867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: A0A6H5JLN8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN8_9PHAE) HSP 1 Score: 512 bits (1318), Expect = 7.940e-155 Identity = 523/1167 (44.82%), Postives = 590/1167 (50.56%), Query Frame = 1 Query: 310 AAHFKMVADRFRALMERRERKLEEAMSDPQTRRDLEVMFPGVITGDY-VTLLAGVRGMEEEDFQDLLDAARKRRREVSG*LGAENG-HEGSRKVPKTAAVSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSHAYADQYAYPRGGDPRAATGGERRVGAPSVAALGGRAGAGHGXXXXXXXXXSSSRPAQPADDEVDDNGVFPHYSAPAGAGRRGEQRGGXXXXGHGXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPSLWSRQQQQHSXXXXXXXXXXXXXXXXXXXLLHPARGGVQAAADSHAVSGSRP----AADAVVAATSGDRVEGRGPGGEGRGGRGGGRSRAVTAADEYYDHPFYQREREPLGEGGMVRGGGGRGAAGRMHYTDSGPPMGAPPGSAAVAAGAGGHRPYPGPPQGARDR-------GERPSGGNPR--------------GHPMGPIERGEP--LPPRYARPAQPGINQALYEAVERIFRHRELHGGGGAGXX-RAASPSMADGSKADAIGADERGVGMGLRAGLPPVLDAKKATMKIIGIMETFDGRLDDVMADRRARAELDAIFPGVKDQDFRALLEGCIERSQVTYILPVYLSTKSRALFCFRTPPLYRKPVDRDYHDG----EHAYSRME----YQERERAYHRDHPEDPRHPSQHPPGGYAGPEPPPMYREARDRGGRFFTGPRHGYPNPNSAYDPRDVYPGERAPGXXXXXXXXYEDQRLAARAAARGGRGGFIPAKHELPGDPDKA---YDAEPDA-TYPKYP----GPGRMRQGSMRNGERPAAADARAAPPPLYKAPTRQGGPVVGGSPSLPPSEAGA-YHPQHRHYPQHARGAPGSHLPAPT-GSPPAHSRRRSDGTSSPPPLPPHSLHHDSRPGA--------SATGPTAGARSAGPLGRAGIITRGRGSVTPLSGASNGDGHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEAPFNEVVMDSSGVTRLFIPENPPIVPRRPPSKGNKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGKRNSDKTTARNNQVSEQMHELLRRRKVMIE 3642 A H K A RFRALM+RRER LEEAMSDPQTR DL MFPG DY TLLAGVRGMEE +FQ+LL ARKRRR +G+ENG EG RKVPK SPS XXXXXXXXXXXXXXXXXXXXXXXXXXXX YAD Y + PR ERR GAP ++ A A G Q WSRQQ+ LHPARG +A+D + SRP A A+ ++V G A +YYDH +YQR+REP GEGG V GG GR Y + GP +GA AAV A H PYPGPP+ A D G R GG PR GHPM P +RG LPPRY R + P INQ L EA+ERIF HRE G G G R AS ++ +GS + + G R PP AT++II IME+F+GRL+DVM+D RARAELDAIFPG+ +++FRALLE CIERSQ TPPLYR+P DRDY +G E + RME YQERERAY RDHP P P PPPMY+E RDR RF+ PR YP+P+ AY D R PG Y +QR G ++ A L G D + YD E +A +YP+Y G GR PPPLYK P R+G P VG S PSE GA APT GSP H RRR + P SL D+RP SA+GPT ++T G G GDG + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PF EVV D++G+TRLFIPE PP+VPRRPPSKGNKRETLGDIA RIPV VMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAG+RNS+ T RNNQVSEQM ELLRRR+VMIE Sbjct: 144 AEHLKKAAARFRALMDRRERSLEEAMSDPQTRTDLAAMFPG--DDDYHTTLLAGVRGMEEGEFQELLSTARKRRRGEG--VGSENGVREGIRKVPKVGDAVSPSPPSATAAGGLARARRDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---YADTYYHSGADHPREMV--ERRGGAP--------------------------------------------FADAAAAAAGGTQE-----------------------------------------WSRQQRHPHQQE-----------------LHPARGRAGSASDGQVAAPSRPPMTGAGATPAPASVAEQVGGXXXXXXXXXXX---XXXXXXXAGDYYDHLYYQRDREPRGEGGPVMGG-----RGRYPYNNVGPSVGAQGSPAAVPAA---HHPYPGPPRVAHDHYRVGGGAGGRGGGGRPRSPVHMAARGSSRSSGHPMRPSDRGGEAVLPPRYVRASPPSINQTLCEAIERIFEHREKLAGAGVGVGGRVASAAVTEGSNTSTGLRGDAKMNGGRRGAAPP---PPGATLRIIAIMESFEGRLNDVMSDARARAELDAIFPGMHEREFRALLEECIERSQ--------------------TPPLYRQPADRDYRNGVGGGERVFGRMEAERMYQERERAYRRDHPGHPHEPP-----------PPPMYQEMRDREERFYASPRRPYPHPDVAY--HDAGYLRRRPGAVGV----YHEQRPPXXXXXXXXXG-YVHANRAL-GPEDSSHMYYDPELEAPSYPQYAAAAAGRGRGVPXXXXXXXXXXXXXXXXXPPPLYKPPVRRG-PEVGLS---QPSEGGACXXXXXXXXXXXXXXXXXXXXSAPTDGSPRDHGRRRVGAS----PSRAQSLRGDTRPRGGSVASLPPSASGPT-------------VVTNGAG----------GDGRLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAASGGARPRMDSLAGEDCDVG--KPFCEVVRDATGLTRLFIPETPPVVPRRPPSKGNKRETLGDIALRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGRRNSE-ITIRNNQVSEQMQELLRRRQVMIE 1112
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: D8LNV2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV2_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 4.880e-131 Identity = 390/861 (45.30%), Postives = 448/861 (52.03%), Query Frame = 1 Query: 1228 LHPARGGVQAAADSHAVSGSRPA--------ADAVVAATSGDRVEGRGPGGEGRGGRGGGRSRAVTAADEYYDH--PFYQREREPLGEGGMVRGGGGRGAAGRMHYTDSGPPMGAPPGSAAVAAGAGGHRPYPGPPQG-------------------ARDRGERPSGGNPR--GHPMGPIERGEP--LPPRYARPAQPGINQALYEAVERIFRHRELHGGGGAGXX-RAASPSMADGSKADAIGADERGVGMGLRAGLPP--------VLDAKKATMKIIGIMETFDGRLDDVMADRRARAELDAIFPGVKDQDFRALLEGCIERSQVTYILPVYLSTKSRALFCFRTPPLYRKPVDRDYHDGEHAYSRME----YQERERAYHRDHPEDPRHPSQHPPGGYAGPEPPPMYREARDRGGRFFTGPRHGYPNPNSAYDPRDVYPGERAPGXXXXXXXXYEDQRLAARAAARGGRGGFIPAKHEL-PGDPDKAY-DAEPDA-TYPKYPGPGRMRQGSMRNGERPAAADARAAPPP-------------------LYKAPTRQGGPVVGGSPSLPPSEAGAYHPQHRHYPQHARGAPGSHLPAPTGSPP---AHSRRRSDGTSSPPPLPPHSLHHDSRPGASATGPTAGARSAGPLGRAGIITRGRGSVTPLSGASNGDGHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEAPFNEVVMDSSGVTRLFIPENPPIVPRRPPSKGNKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGKRNSDKTTARNNQVS 3597 LHPARG +A+D + SRP A A VA G +GRGPG RSR V A +YYDH P+Y+R+REP G GG GG GR Y D GPPMGA AAV A H PYPGPP+ R + + G+PR GHPM P +RG LPPRY R + P INQ L EA+ER+F HRE G G G R AS ++ +GS + + G R PP LDAKKAT++II IME+F+GRL+DVM D RARAELDAIFPG+ +++FRALLE CIERSQ+ S+ C PP + + Y RME Y ERERAY RDHP P P PPP+Y+E RDR RF+ PR YP+P+ AY R PG Y +QR G F+ A L P D Y DAE +A +YP+Y AA R PP LYK P R+G P VG S PSE GAYH +H H+P+ H RRR +SPP SL D+RP R G + S + +NG G GD XXXXXXXXXXXXXXXXXXXXXXXXXXXX PF EVV D+SG+TRLFIPE PP+VPRRPPSKGNKRETLGDIAHRIPV VMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAG+RNS+K T RNNQVS Sbjct: 92 LHPARGRAGSASDGQVAAPSRPPMPGAGATPAAASVAEQFGGVGDGRGPG----------RSRGVADAVDYYDHDHPYYRRDREPRGGGGPAMGG-----RGRHPYNDVGPPMGAQGSPAAVPAA---HHPYPGPPRADHXXXXXXXXXXXXXXXXRPRSPVQMAARGSPRSSGHPMRPPDRGGEAVLPPRYVRASPPSINQTLCEAIERVFEHREKMAGAGVGVGGRVASAAVTEGSNTSTGLRGDAEMNGGRRGAAPPPRGVSSSLALDAKKATLRIIAIMESFEGRLNDVMRDARARAELDAIFPGMHEREFRALLEECIERSQLERWGRKRTCCGSQDP-CPEVPPAKERVTVAASCAAQDTYGRMEAERMYLERERAYRRDHPGHPHEPP-----------PPPIYQEMRDREERFYASPRRPYPHPDVAYHDEGYL--RRRPGAVGA----YHEQRPXXXXXXXXXXG-FVHANRALGPEDSSHKYHDAELEAPSYPQYAA---------------AAGRGRGVPPXXXXXXXXXXXXXXXXXXXXLYKPPVRRG-PGVGLS---QPSEGGAYH-RHGHHPRXXXXXXXXXXXXXXXXXXXXXGHDRRRVG--ASPPGA--QSLRGDTRP------------------RGGSVASLPPSTSRPRVVTNGTG-GDGRLEDDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAASGGARPRVDSLAGEDCDVGKPFCEVVRDASGLTRLFIPETPPVVPRRPPSKGNKRETLGDIAHRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGRRNSEKITTRNNQVS 872
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: D8LEC2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC2_ECTSI) HSP 1 Score: 154 bits (390), Expect = 1.440e-35 Identity = 84/124 (67.74%), Postives = 94/124 (75.81%), Query Frame = 1 Query: 3271 RLFIPENPPIVPRRPPSKGNKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGKRNSDKTTARNNQVSEQMHELLRRRKVMIE 3642 RL IP PP VPRR PSKGNKRETL DIA RIPVG+MR YFNYPLR AAEAM+ISVTTLKRLCRRHGVKRWPHRQI GINR + LE Q D A D+ + V++Q+ +L RRR V+IE Sbjct: 75 RLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTA---KGDEVDS----VADQLRQLYRRRDVIIE 191
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: A0A6H5K716_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K716_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.040e-34 Identity = 84/124 (67.74%), Postives = 93/124 (75.00%), Query Frame = 1 Query: 3271 RLFIPENPPIVPRRPPSKGNKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGKRNSDKTTARNNQVSEQMHELLRRRKVMIE 3642 RL IP PP VPRR PSKGNKRETL DIA RIPV +MR YFNYPLR AAEAM+ISVTTLKRLCRRHGVKRWPHRQI GINR + LE Q D A D+ + V+EQ+ +L RRR V+IE Sbjct: 87 RLTIPHEPPKVPRRTPSKGNKRETLADIAKRIPVELMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTA---KGDEVDS----VAEQLRQLHRRRDVIIE 203
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI) HSP 1 Score: 141 bits (356), Expect = 6.100e-34 Identity = 83/138 (60.14%), Postives = 98/138 (71.01%), Query Frame = 1 Query: 3238 NEVVMDSSG--VTRLFIPENPPIVPRRPPSK-GNKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGKRNSDKTTARNNQVSEQMHELLRRRKVMIE 3642 N DS G V RL IP+ PP +P R SK G+KRE L DIA RIPV +MR YFNYPLR +AEAM+ISVTTLKRLCRRHGVKRWPHRQISG+NR + LE Q D A R ++ A V E++ +L RRR+V+IE Sbjct: 23 NNGTEDSRGPAVRRLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRTLGDLEAQHDAA--RGEEEIAA----VEEELRQLHRRREVIIE 154
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.940e-30 Identity = 79/125 (63.20%), Postives = 94/125 (75.20%), Query Frame = 1 Query: 3271 RLFIPENPPIVPRRPPSK-GNKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGKRNSDKTTARNNQVSEQMHELLRRRKVMIE 3642 RL IP+ PP +P R SK G+KRE L DIA RIPV +MR YFNYPLR +AEAM+ISVTTLKRLCRRHGVKRWPHRQISG+NRA+ LE Q D A R ++ A V E++ +L RRR+V+IE Sbjct: 37 RLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRALGDLEAQHDAA--RGEEEIAA----VEEELRQLHRRREVIIE 155
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: A0A6H5L9C1_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C1_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.760e-26 Identity = 62/100 (62.00%), Postives = 79/100 (79.00%), Query Frame = 1 Query: 3247 VMDSSGVTR--LFIPENPPIVPRRPPSKGNKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQ 3540 V+ S +R L +P+ P + R+PP KG +RETL DIA R+PV V+ PYFN+ LRTAA+AM ISVT+LKRLCRRHGVKRWPHRQ+SG+NR ++HLE +Q Sbjct: 13 VLQQSNASRTPLNLPKTPRKLARQPPLKGTRRETLQDIARRVPVEVLLPYFNFSLRTAADAMCISVTSLKRLCRRHGVKRWPHRQLSGLNRTVSHLEERQ 112
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 4.280e-14 Identity = 31/68 (45.59%), Postives = 53/68 (77.94%), Query Frame = 1 Query: 3328 NKRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLE 3531 +KR+T ++A R+PV V+ +++ PL AA +++S+T LK+LCR++G+KRWPHRQ+S +N+++ LE Sbjct: 1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLE 68
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 1.040e-10 Identity = 32/67 (47.76%), Postives = 51/67 (76.12%), Query Frame = 1 Query: 3331 KRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLE 3531 KR+T D+A R+P+ V+ +++ PL AA+ +N+S+T LK+LCR +GVKRWPHRQ+S +++ + LE Sbjct: 464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLE 530
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.250e-10 Identity = 32/67 (47.76%), Postives = 51/67 (76.12%), Query Frame = 1 Query: 3331 KRETLGDIAHRIPVGVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLE 3531 KR+T D+A R+P+ V+ +++ PL AA+ +N+S+T LK+LCR +GVKRWPHRQ+S +++ + LE Sbjct: 464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLE 530 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig556.13867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig556.13867.1 >prot_L-elsbetiae_contig556.13867.1 ID=prot_L-elsbetiae_contig556.13867.1|Name=mRNA_L-elsbetiae_contig556.13867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=725bp MVRGGGGRGAAGRMHYTDSGPPMGAPPGSAAVAAGAGGHRPYPGPPQGARback to top mRNA from alignment at L-elsbetiae_contig556:144..7036- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig556.13867.1 ID=mRNA_L-elsbetiae_contig556.13867.1|Name=mRNA_L-elsbetiae_contig556.13867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6893bp|location=Sequence derived from alignment at L-elsbetiae_contig556:144..7036- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig556:144..7036- >mRNA_L-elsbetiae_contig556.13867.1 ID=mRNA_L-elsbetiae_contig556.13867.1|Name=mRNA_L-elsbetiae_contig556.13867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4350bp|location=Sequence derived from alignment at L-elsbetiae_contig556:144..7036- (Laminarionema elsbetiae ELsaHSoW15)back to top |