mRNA_L-elsbetiae_contig5552.13859.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI) HSP 1 Score: 199 bits (507), Expect = 2.840e-62 Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 2 Query: 113 MADDEQAATEAQEP-TDRKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 421 MADDEQAA+EAQE T+RKIEVLIAEIPE+LQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE Sbjct: 1 MADDEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA) HSP 1 Score: 104 bits (259), Expect = 6.690e-25 Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 2 Query: 116 ADDEQAATEAQEPTDRKIEVLIAEIPE----DLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 421 +DDEQ Q RK+ +L AE PE DLQ+ A R+V ++ K+ I KD+AT+VK+HFDE+ G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E Sbjct: 4 SDDEQP----QYKLSRKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA) HSP 1 Score: 102 bits (253), Expect = 6.360e-24 Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 2 Query: 161 RKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 421 RK + +IPE++ +KA + AMD++ IEKDIAT +K FD++ G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E Sbjct: 12 RKETIHQMDIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 5.640e-21 Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 149 EPTDRKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 394 E +R + VL AE+PEDL+ KA A+D +++EKD+A VKK FDE G+WHCV GR+FGCS+THETK+L FFK DQ+ Sbjct: 7 ERKERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 8.230e-21 Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 2 Query: 185 EIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 382 +IPE LQ+KA RV + + + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+ Sbjct: 10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A448WG77_9PLAT (Dynein light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT) HSP 1 Score: 87.8 bits (216), Expect = 1.040e-18 Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 2 Query: 161 RKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 415 RK + A++PED+Q +A R AMDKY+IEKDIA +KK FD+ +WHC+ GR+FG VTHETKH +F Q+ VLLF S Sbjct: 6 RKAVIKNADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A6A5EWR7_PERFL (Dynein light chain n=1 Tax=Perca fluviatilis TaxID=8168 RepID=A0A6A5EWR7_PERFL) HSP 1 Score: 89.0 bits (219), Expect = 1.090e-18 Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 2 Query: 128 QAATEAQEPTDRKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 415 QA++ + TDRK + A++ ED+QQ A AM+KY+IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S Sbjct: 34 QASSSSLTMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 129
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A3B1IS75_ASTMX (Dynein light chain n=95 Tax=Euteleostomi TaxID=117571 RepID=A0A3B1IS75_ASTMX) HSP 1 Score: 87.4 bits (215), Expect = 1.380e-18 Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 2 Query: 155 TDRKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 415 TDRK + A++ ED+QQ A AM+KY+IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S Sbjct: 2 TDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: H2S8S8_TAKRU (Dynein light chain n=7 Tax=Clupeocephala TaxID=186625 RepID=H2S8S8_TAKRU) HSP 1 Score: 87.4 bits (215), Expect = 1.380e-18 Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 2 Query: 155 TDRKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 415 TDRK + A++ ED+QQ A AM+KY+IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S Sbjct: 2 TDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Match: A0A8J4SJY8_9TREM (Dynein light chain n=2 Tax=Paragonimus TaxID=34503 RepID=A0A8J4SJY8_9TREM) HSP 1 Score: 87.4 bits (215), Expect = 1.380e-18 Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 2 Query: 155 TDRKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 415 TD K + A++PED+QQ A A++KY+IEKDIA +KK FD++ +WHCV GR+FG VTHETKH +F Q+ +LLF S Sbjct: 2 TDHKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKHNPTWHCVVGRNFGSYVTHETKHFIYFYIGQVAILLFKS 88 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5552.13859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5552.13859.1 >prot_L-elsbetiae_contig5552.13859.1 ID=prot_L-elsbetiae_contig5552.13859.1|Name=mRNA_L-elsbetiae_contig5552.13859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp MADDEQAATEAQEPTDRKIEVLIAEIPEDLQQKAKRRVCLAMDKYDIEKDback to top mRNA from alignment at L-elsbetiae_contig5552:5485..7118- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5552.13859.1 ID=mRNA_L-elsbetiae_contig5552.13859.1|Name=mRNA_L-elsbetiae_contig5552.13859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1634bp|location=Sequence derived from alignment at L-elsbetiae_contig5552:5485..7118- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5552:5485..7118- >mRNA_L-elsbetiae_contig5552.13859.1 ID=mRNA_L-elsbetiae_contig5552.13859.1|Name=mRNA_L-elsbetiae_contig5552.13859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5552:5485..7118- (Laminarionema elsbetiae ELsaHSoW15)back to top |