mRNA_L-elsbetiae_contig555.13852.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig555.13852.1
Unique NamemRNA_L-elsbetiae_contig555.13852.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig555.13852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig555contigL-elsbetiae_contig555:13023..14089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig555.13852.1prot_L-elsbetiae_contig555.13852.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig555 13023..14076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816585.7675714-CDS-L-elsbetiae_contig555:13022..132331622816585.7675714-CDS-L-elsbetiae_contig555:13022..13233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 13023..13233 -
1691683665.549284-CDS-L-elsbetiae_contig555:13022..132331691683665.549284-CDS-L-elsbetiae_contig555:13022..13233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 13023..13233 -
1622816585.7825248-CDS-L-elsbetiae_contig555:14002..140761622816585.7825248-CDS-L-elsbetiae_contig555:14002..14076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 14003..14076 -
1691683665.5610468-CDS-L-elsbetiae_contig555:14002..140761691683665.5610468-CDS-L-elsbetiae_contig555:14002..14076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 14003..14076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816585.795026-UTR-L-elsbetiae_contig555:14076..140891622816585.795026-UTR-L-elsbetiae_contig555:14076..14089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig555 14077..14089 -
1691683665.5721025-UTR-L-elsbetiae_contig555:14076..140891691683665.5721025-UTR-L-elsbetiae_contig555:14076..14089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig555 14077..14089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig555.13852.1

>prot_L-elsbetiae_contig555.13852.1 ID=prot_L-elsbetiae_contig555.13852.1|Name=mRNA_L-elsbetiae_contig555.13852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MVRGGRGMPGDSSPGMQQGGVPPLRPTGANGSMPGGAMQGVQAGPGSNPP
RGAGGLLPTPPAPGPSGPAGFVAPGIGGRGDPLLPVPRPQMIRPD
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mRNA from alignment at L-elsbetiae_contig555:13023..14089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig555.13852.1 ID=mRNA_L-elsbetiae_contig555.13852.1|Name=mRNA_L-elsbetiae_contig555.13852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1067bp|location=Sequence derived from alignment at L-elsbetiae_contig555:13023..14089- (Laminarionema elsbetiae ELsaHSoW15)
GTCGGGTGGTGGGATGGTCAGAGGCGGCCGCGGGATGCCTGGAGATTCCA
GTCCTGGGATGCAGCAAGGCGGGGTTCCACCCTTGAGGTGCGTTGTTCGG
GCTTCCTTCCCCACGATTTTCCGTCCAGCATCATTTTGTTGACGTTGCTT
TAGCGAGCCTTAAACTTCGAGAAAGCAACCCACCACGTCTACGAGCAATG
AACCTGCAACAGCAATCTCCACGTCGTTTGTGTTTATGCCAGCCAGTACA
CAGGAGTCTCCCCAGCCGAACTTGGTCGGGGCCAGAACGAACTGCTGTTT
CGGTATCTCGAGACTCCGCCAACGACGTGTACCGAAGTGCGGCAGTAGAT
ACCGTTTTCAATCATCGATACCCCGTGCCAGTCCATAGCGTACCCACGAC
GAAGGCCTCGCCAGAGGGCACGTACGCCCCTGCCTGTGTACAACCACTCC
GTTTCTGCTTAAAGAGGAAAGGATAGTCCTACATACATAACTTCACGCTT
TGCGACCTGTCACGCAATGTAGCCAGGCTTTGCCTAGGATACAAAAAAAC
GTTGCCCTGTTGAGTGCTCTGTCATATTTTCTTGCTTGTAGGGGTAAAGT
CGCAAGATCTCGCTCTTCCCCTGCCTCTCCGCATTCTTGGAGCCCGATTC
GCCTGTTCGTGCGCCATGCATTTCTCTTCGTCCCTCGCTGGTTCAGTGCG
TCTGTTTTGCGTTGCTGGTTAAGTACGTGTAATCGTGCTACTACTACCAC
TACTGTTAATTGTAGATCGTCAACAGGTCCGCTGACATTGCTACCAAAAA
GCCCCTCGCTGTTTCACTCCAATCTTACTCTTCCTTCTCACTGCTGCCGT
GTCCAGACCTACCGGGGCGAACGGCTCGATGCCCGGAGGCGCAATGCAAG
GGGTGCAAGCAGGACCGGGATCGAACCCCCCCCGTGGGGCAGGCGGGTTG
CTCCCCACGCCACCAGCTCCAGGCCCTTCAGGTCCTGCAGGGTTCGTGGC
TCCAGGCATTGGCGGTCGTGGGGATCCGCTCCTGCCGGTACCACGGCCGC
AAATGATCAGACCTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig555:13023..14089-

>mRNA_L-elsbetiae_contig555.13852.1 ID=mRNA_L-elsbetiae_contig555.13852.1|Name=mRNA_L-elsbetiae_contig555.13852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig555:13023..14089- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAGAGGCGGCCGCGGGATGCCTGGAGATTCCAGTCCTGGGATGCA
GCAAGGCGGGGTTCCACCCTTGAGATGGTCAGAGGCGGCCGCGGGATGCC
TGGAGATTCCAGTCCTGGGATGCAGCAAGGCGGGGTTCCACCCTTGAGAC
CTACCGGGGCGAACGGCTCGATGCCCGGAGGCGCAATGCAAGGGGTGCAA
GCAGGACCGGGATCGAACCCCCCCCGTGGGGCAGGCGGGTTGCTCCCCAC
GCCACCAGCTCCAGGCCCTTCAGGTCCTGCAGGGTTCGTGGCTCCAGGCA
TTGGCGGTCGTGGGGATCCGCTCCTGCCGGTACCACGGCCGCAAATGATC
AGACCTGACACCTACCGGGGCGAACGGCTCGATGCCCGGAGGCGCAATGC
AAGGGGTGCAAGCAGGACCGGGATCGAACCCCCCCCGTGGGGCAGGCGGG
TTGCTCCCCACGCCACCAGCTCCAGGCCCTTCAGGTCCTGCAGGGTTCGT
GGCTCCAGGCATTGGCGGTCGTGGGGATCCGCTCCTGCCGGTACCACGGC
CGCAAATGATCAGACCTGAC
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