mRNA_L-elsbetiae_contig5541.13842.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5541.13842.1
Unique NamemRNA_L-elsbetiae_contig5541.13842.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5541.13842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5541contigL-elsbetiae_contig5541:334..827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size494
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5541.13842.1prot_L-elsbetiae_contig5541.13842.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5541 359..670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816584.6863506-UTR-L-elsbetiae_contig5541:333..3581622816584.6863506-UTR-L-elsbetiae_contig5541:333..358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5541 334..358 +
1691683664.7551155-UTR-L-elsbetiae_contig5541:333..3581691683664.7551155-UTR-L-elsbetiae_contig5541:333..358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5541 334..358 +
1622816584.710562-UTR-L-elsbetiae_contig5541:670..8271622816584.710562-UTR-L-elsbetiae_contig5541:670..827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5541 671..827 +
1691683664.7713058-UTR-L-elsbetiae_contig5541:670..8271691683664.7713058-UTR-L-elsbetiae_contig5541:670..827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5541 671..827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816584.6987598-CDS-L-elsbetiae_contig5541:358..6701622816584.6987598-CDS-L-elsbetiae_contig5541:358..670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5541 359..670 +
1691683664.7636528-CDS-L-elsbetiae_contig5541:358..6701691683664.7636528-CDS-L-elsbetiae_contig5541:358..670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5541 359..670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5541.13842.1

>prot_L-elsbetiae_contig5541.13842.1 ID=prot_L-elsbetiae_contig5541.13842.1|Name=mRNA_L-elsbetiae_contig5541.13842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MGHTDGPVVIIMVIFKRYVAERLPLYLPRFQPAVLPFRSTPCLKLCYLQV
DETFIRSFSNVFNCCCHGPHPSSKGPRGKVCTKRENIQQRVQPNPHIQRS
VSL*
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mRNA from alignment at L-elsbetiae_contig5541:334..827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5541.13842.1 ID=mRNA_L-elsbetiae_contig5541.13842.1|Name=mRNA_L-elsbetiae_contig5541.13842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=494bp|location=Sequence derived from alignment at L-elsbetiae_contig5541:334..827+ (Laminarionema elsbetiae ELsaHSoW15)
GATAAGAAAAGCGCGATGATCACTGATGGGCCACACTGATGGTCCAGTGG
TTATCATCATGGTGATTTTCAAACGCTATGTAGCTGAACGCCTGCCGCTG
TATCTACCGCGCTTTCAACCGGCCGTGCTCCCCTTTCGTTCCACGCCGTG
TTTAAAACTTTGCTATCTACAAGTGGATGAGACGTTTATTAGAAGCTTTT
CAAATGTCTTCAACTGTTGTTGCCACGGGCCTCATCCATCGTCAAAAGGT
CCGAGAGGTAAGGTATGTACCAAGAGGGAAAACATACAGCAGCGTGTCCA
ACCGAACCCGCACATCCAAAGGAGCGTAAGCTTATAGTCGATTACACAGC
GAGTACTGTTGTCATGATCGCACCTTTCTTGCCTGCAAAACTTACCTAGA
CCAGGAAAAAAGATGGAGTCTCCACATATGGAGTTCCATGGAGTTTTTTT
TAGTTCCATGGAAACGGCAAATAACGTTACGACTTATGTCCTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5541:334..827+

>mRNA_L-elsbetiae_contig5541.13842.1 ID=mRNA_L-elsbetiae_contig5541.13842.1|Name=mRNA_L-elsbetiae_contig5541.13842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5541:334..827+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCACACTGATGGTCCAGTGGTTATCATCATGGTGATTTTCAAACG
CTATGTAGCTGAACGCCTGCCGCTGTATCTACCGCGCTTTCAACCGGCCG
TGCTCCCCTTTCGTTCCACGCCGTGTTTAAAACTTTGCTATCTACAAGTG
GATGAGACGTTTATTAGAAGCTTTTCAAATGTCTTCAACTGTTGTTGCCA
CGGGCCTCATCCATCGTCAAAAGGTCCGAGAGGTAAGGTATGTACCAAGA
GGGAAAACATACAGCAGCGTGTCCAACCGAACCCGCACATCCAAAGGAGC
GTAAGCTTATAGATGGGCCACACTGATGGTCCAGTGGTTATCATCATGGT
GATTTTCAAACGCTATGTAGCTGAACGCCTGCCGCTGTATCTACCGCGCT
TTCAACCGGCCGTGCTCCCCTTTCGTTCCACGCCGTGTTTAAAACTTTGC
TATCTACAAGTGGATGAGACGTTTATTAGAAGCTTTTCAAATGTCTTCAA
CTGTTGTTGCCACGGGCCTCATCCATCGTCAAAAGGTCCGAGAGGTAAGG
TATGTACCAAGAGGGAAAACATACAGCAGCGTGTCCAACCGAACCCGCAC
ATCCAAAGGAGCGTAAGCTTATAG
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