mRNA_L-elsbetiae_contig5535.13826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5535.13826.1
Unique NamemRNA_L-elsbetiae_contig5535.13826.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 4.030e-141
Identity = 203/252 (80.56%), Postives = 220/252 (87.30%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEGGGDS 814
            M RT FVALACGMLG A+A L VVTP+ GD VV+ R YTV+W+GTG N RFEIDLYYC SMC+ DECGEWVTALCPYGEDGCPDNEGD+DI+MPEPM GTSGSGYKVRVADV DED++DCSDEFYL+A  +APS  DA GPYV VTSP+ GDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLY+A GSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPE+AEAG Y IRVGD+E   V+GCS EFEI G  DS
Sbjct:    2 MVRTGFVALACGMLGVASA-LEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDS 252
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BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 1.520e-137
Identity = 198/240 (82.50%), Postives = 213/240 (88.75%), Query Frame = 2 
Query:   95 MLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEGGGDS 814
            MLG A+A L VVTP+EGD VVA R YTV+WTGTG NNR+EIDLYYCGSMC+ DECG+WVTALCPYGEDGCPDNEGD+DI+MPEPM GTSGSGYKVRVADV D+D+ DCSDEFYL+A  EAPS GDA GPYV VTSP+ GDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSA GSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPE+AEAG Y IRVGD+E   V+GCS EFEI G  DS
Sbjct:    1 MLGAASA-LEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDS 239
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BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 1.540e-126
Identity = 186/252 (73.81%), Postives = 211/252 (83.73%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEGGGDS 814
            M RT FVALACGMLG A A L V TPS+G TV+ADRTYTV+WTGT  +NRFEIDLYYCGSMC+ D+CG+WVTALCPYGEDGCPDNEGD+DI+MPEPM+GTSGSGYKVRV D+ DE++ DCSDEFYLLAS+EAPSVGD DGP + VTSPA GD A    EYTVEFDYDNG+GSSV RFAIDLY A G GDCGT++ ++CDKPTIGCKDSMGDYDVEIP + +AG YKIRV  +E   ++ CSG F IE G DS
Sbjct:    1 MTRTGFVALACGMLGAANA-LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDS 251
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BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 3.750e-121
Identity = 181/251 (72.11%), Postives = 206/251 (82.07%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEGGGD 811
            MART FVALAC MLG A A L VVTPS    VVADRTYTV+WTG  D+ RFEIDLY+CGSMC+ D CG+WVTALCPYGE+GCPDNEGD+DI+MPEPM G S SGYKVRV DVSDED+ DCSD FYL+AS +AP  G   G ++ VTSPAEGDSAEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIP + EAG YKIRVG +E  +++GCSG F I GG D
Sbjct:    1 MARTGFVALACAMLGAANA-LEVVTPSADLIVVADRTYTVEWTGA-DSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDD 249
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BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 3.150e-109
Identity = 170/249 (68.27%), Postives = 198/249 (79.52%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEGG 805
            MARTAF ALA GMLG A A L VV+P+ GD VVAD  YTV+WTG   + R++IDLYYCGS+C+ DECG+WVTALCPYG+DGCPD +GD+D++MPEPM GTS SGYKV V D SDE +  CS +F L+ASTEAP   D  G YV VTSP++GD+A AG EYTVEFDYDNGLGSSV RFAIDLYS+ GSGDCGT++ T+CDKP+IGCKDS GDYDV IP   E+G Y IRVG +E  DV+GCS  FEI GG
Sbjct:    1 MARTAFAALAFGMLGAANA-LEVVSPAAGDMVVADSAYTVEWTGA-TSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGG 245
[Close]
BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 8.010e-107
Identity = 159/208 (76.44%), Postives = 179/208 (86.06%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDS 682
            MART FVALACGMLG A A L V TPS+G TV+ADRTYTV+WTGT  +NRFEIDLYYCGSMC+ D+CG+WVTALCPYGEDGCPDNEGD+DI+MPEPM GTSGSGYKVRV D+ DE++ DCSDEFYL+AS+EAPSVGD DGP + VTSPA GD A    EYTVEFDYDNG+GS V RFAIDLY A G GDCGT++ ++CDKPTIGCKDS
Sbjct:    2 MARTGFVALACGMLGAANA-LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
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BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 1.700e-99
Identity = 161/247 (65.18%), Postives = 193/247 (78.14%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYS-AAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEI 796
            MARTAF ALA GMLG A A L VV+P+ G +V+ADRTYTV+WTGT D+ RFEIDLYYCGS C+ DECG+WVTALCPYG DGCPD +GD+DI+MPEPM GTS SGYKV V D +DE +  CS +F L+AST+AP+ G+  G  + VTSP++GD+A AG  YTVE+DY+NGLGSS  RFAIDLYS   G+GDCGT++ TLCDKP+IGC DS GDYDVEIP +  AG Y +RVG +    +F CS  FEI
Sbjct:    1 MARTAFAALAFGMLGAANA-LEVVSPAAGISVIADRTYTVEWTGTSDS-RFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEI 243
[Close]
BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 3.880e-94
Identity = 151/247 (61.13%), Postives = 185/247 (74.90%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIE 799
            MARTAF A+A GML  A A L VV+P  G +V+ADR YTV+WTGT    RFEIDLYYC S C+ D CG+WVTALCPYG DGCPD+ GD+DIIMPEPM GTS SGYKV V +  DE +  CSD+F L+AS +AP  G+  G  + VTSP++GD+A AGE YTVE+DY+NG GSS  RFA+DLY   G+GDCGT++ TLCD+P+IGC DS GDYDVEIP +  AG Y IRVG ++   ++ CS  FE++
Sbjct:    1 MARTAFAAVAFGMLSAANA-LEVVSPDGGISVLADRAYTVEWTGT-TTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVD 243
[Close]
BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 2.920e-85
Identity = 134/184 (72.83%), Postives = 149/184 (80.98%), Query Frame = 2 
Query:  251 DECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEG 802
            DECGEWVTALCPYG +GCPDNEGD+DI+MPEPM GTSGSGYKVRVADV    + DCSDEFYL+AS EAP VG  D PY+MVTSP+ GD A+AG EYTVEFDYDNG+GS V RF IDLYS  G+GDCGT++  LCDK  IGCKDSMGDYDVEIPE    G Y IRVG +E   ++GCSGEFEI G
Sbjct:   14 DECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG 197
[Close]
BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 2.480e-83
Identity = 142/249 (57.03%), Postives = 170/249 (68.27%), Query Frame = 2 
Query:   59 MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNRFEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGTSGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAEGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEGG 805
            MARTAF ALA GMLG   A L V +P+ GD +VA  + TV+WTGT  + RF+IDLYYCGS+C+ DECG+WVTALCPYG+DGCPD +GD+D++MPEPM GTS SGYKV V D SDE +  CS EF L+AS                                  FD+DNG GSSV RF+IDLY + GSGDCGT++ ++CDK +IGCKDS GDYDV IP + E+G Y IRVG +E PDVFGCS  FEI GG
Sbjct:    1 MARTAFAALAFGMLGAVNA-LEVTSPAAGDMIVAASSTTVEWTGTS-SGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGG 245
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5535.13826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JFT9_9PHAE4.030e-14180.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI1.520e-13782.50EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE1.540e-12673.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI3.750e-12172.11EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI3.150e-10968.27Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FH21_ECTSI8.010e-10776.44Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
D7G3F0_ECTSI1.700e-9965.18EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE3.880e-9461.13GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5JEJ8_9PHAE2.920e-8572.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE2.480e-8357.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5535contigL-elsbetiae_contig5535:1427..7230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_005190.1
Exons6
Model size2076
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5535.13826.1prot_L-elsbetiae_contig5535.13826.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5535 2605..7172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.108547-UTR-L-elsbetiae_contig5535:1426..26041622816583.108547-UTR-L-elsbetiae_contig5535:1426..2604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5535 1427..2604 -
1691683663.581484-UTR-L-elsbetiae_contig5535:1426..26041691683663.581484-UTR-L-elsbetiae_contig5535:1426..2604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5535 1427..2604 -
1622816583.2107868-UTR-L-elsbetiae_contig5535:7172..72301622816583.2107868-UTR-L-elsbetiae_contig5535:7172..7230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5535 7173..7230 -
1691683663.6811569-UTR-L-elsbetiae_contig5535:7172..72301691683663.6811569-UTR-L-elsbetiae_contig5535:7172..7230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5535 7173..7230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816583.1200721-CDS-L-elsbetiae_contig5535:2604..28191622816583.1200721-CDS-L-elsbetiae_contig5535:2604..2819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 2605..2819 -
1691683663.592488-CDS-L-elsbetiae_contig5535:2604..28191691683663.592488-CDS-L-elsbetiae_contig5535:2604..2819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 2605..2819 -
1622816583.1325064-CDS-L-elsbetiae_contig5535:3256..33921622816583.1325064-CDS-L-elsbetiae_contig5535:3256..3392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 3257..3392 -
1691683663.60464-CDS-L-elsbetiae_contig5535:3256..33921691683663.60464-CDS-L-elsbetiae_contig5535:3256..3392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 3257..3392 -
1622816583.145284-CDS-L-elsbetiae_contig5535:3842..40131622816583.145284-CDS-L-elsbetiae_contig5535:3842..4013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 3843..4013 -
1691683663.6152923-CDS-L-elsbetiae_contig5535:3842..40131691683663.6152923-CDS-L-elsbetiae_contig5535:3842..4013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 3843..4013 -
1622816583.1598213-CDS-L-elsbetiae_contig5535:4344..44701622816583.1598213-CDS-L-elsbetiae_contig5535:4344..4470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 4345..4470 -
1691683663.6301117-CDS-L-elsbetiae_contig5535:4344..44701691683663.6301117-CDS-L-elsbetiae_contig5535:4344..4470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 4345..4470 -
1622816583.1774316-CDS-L-elsbetiae_contig5535:4706..47911622816583.1774316-CDS-L-elsbetiae_contig5535:4706..4791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 4707..4791 -
1691683663.6547747-CDS-L-elsbetiae_contig5535:4706..47911691683663.6547747-CDS-L-elsbetiae_contig5535:4706..4791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 4707..4791 -
1622816583.1943045-CDS-L-elsbetiae_contig5535:7065..71721622816583.1943045-CDS-L-elsbetiae_contig5535:7065..7172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 7066..7172 -
1691683663.668041-CDS-L-elsbetiae_contig5535:7065..71721691683663.668041-CDS-L-elsbetiae_contig5535:7065..7172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5535 7066..7172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5535.13826.1

>prot_L-elsbetiae_contig5535.13826.1 ID=prot_L-elsbetiae_contig5535.13826.1|Name=mRNA_L-elsbetiae_contig5535.13826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=280bp
MARTAFVALACGMLGTAAAQLTVVTPSEGDTVVADRTYTVQWTGTGDNNR
FEIDLYYCGSMCLGDECGEWVTALCPYGEDGCPDNEGDFDIIMPEPMMGT
SGSGYKVRVADVSDEDNTDCSDEFYLLASTEAPSVGDADGPYVMVTSPAE
GDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAAGSGDCGTFMYTLCDK
PTIGCKDSMGDYDVEIPENAEAGTYKIRVGDYEFPDVFGCSGEFEIEGGG
DSGDSESGDGGDSSDSGDDNMSMSMSFRF*
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mRNA from alignment at L-elsbetiae_contig5535:1427..7230-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5535.13826.1 ID=mRNA_L-elsbetiae_contig5535.13826.1|Name=mRNA_L-elsbetiae_contig5535.13826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5804bp|location=Sequence derived from alignment at L-elsbetiae_contig5535:1427..7230- (Laminarionema elsbetiae ELsaHSoW15)
TCCTTCCTCACTCGAAACGCACCTACCCTACCCCGACTCCTTTGTACCCT
CAGCAACAATGGCTCGCACTGCTTTCGTTGCTCTGGCATGCGGCATGCTC
GGCACTGCCGCCGCTCAGCTGACGGTGGTGACCCCCAGCGAGGGCGACAC
GGTTGTGGCCGACAGGTGAGAGCGAAATGAAGCAAAAAGGTTGCCGTGTG
TGTTTGTGTTCAGTGTTTTCCGCGTTCGCAAACGAGAGAGGGAGGAAAGA
GCGAGGGAAACGGATAGACACTCGTTGCAACCCTACCCACAGCTCAGGGC
CCAAACTCTTCGTATCATTCCACGTCACGGCCACTTCCTTCCGCGGATTG
CTCCCAAAAAGCCAGACCACACCTCTTCCACTCATGCGCGCCGCAACCTT
AGCTTTCCGTCGTACAAGCGCGTATATGCACGCAGCTCATGAATCATCTA
CGGTAGCCTTGGGGTCGCATAGCAAGGAAGGATCGCTGAGAGAGCGCGCG
CTATCGTCTCGAGCCCGCCATCGAAGACATCGACCCCGAAAAAACATTCG
ACTCCTTTTTTATTTTCTGGTGTGTGCCTATTTTCTCGGATTCCCCGGCG
GGTCTTGCCGACTTTTCGGGAACCGATGTACATGCATACAAACATACATC
AATGAATCCGAGCCTCGTGCGGCACCAGCTCCCCTCATCGAGGCATACAG
CGCGCGTGTGGACTCTGTTCTTTGCCTCCAGCGACTGTCCCCTCCTCCCA
CGCGAGCGTGGTTTCGTTTTAGTCTTGCCGCGAAGAAACCCTTCTGACGA
ATGGCTGGTAGACAGACACACAAGCAAGATTTGTTATGCCGTTTCTGCCC
CTGGCATAACCAGCACAAGGGCAGGTAGTTTCGAAAACCGATAAGCCCAC
CTGATCTTCTTATTGCCCGTGTAGCATATAGCGCCTTTCAGCGCGACACT
ATGCTGCCTTCCACACGGCGGCGAGAGTGCACTACTACTGTGAGCATAAC
AACGAACCAAAGAAACGAATTTTTCGTTTTGGGAAGAAACGGGGTACGAC
TACTGACACACACTCTCATCTGTCTACATAACATAAAAAAGCTGTGTTGA
TTTTCGTTCTTTCATCGCCCTCCCTCTCCCCCGCCCGAATGAAACGAGAG
CGATTCAAGCCGAGCTCCTTTCGAAAGATGCGTTCCTCAATGCCCATCGG
CATTGGCTCAATTGTTATCCGAACAACAGCTGCCGCGAGAGGACGCCCAA
AATCTCAGATTTTTTGCGGCCAATGTAATATCCCGCGATATCCCGTGGTT
GTTTACACAAGTTTCTTGCTAGATTTCCTACTCCTCGTCTGCCGTAGGCC
ATCGTATCGGGCGAAGCCGTGCTCCAAAAAGCACCCGGCCGGTAGATCCT
CCTTGAAACACCCACTGAAGCCTTCTAGTTCAAAACCAAATATGGAGTAT
GTTTCTACAGAGTAGTCGAGTTTCTTTTTTTCGTGGTGCTTCGGAACGCA
AAAAATGATTGTTGTGAACCTGTCAGTGGGCAACGAGGCCCCACCACAAA
CCCCCGCCTGAGCAGTCTGCATGCATTTGCGCTGACGATATCTCTCACGG
CAGTTTCCTCAGATGGGAACAAACGAATCGCTCGGGTCGATCATCGGAAC
ATACCTACGGAATCTTCGAAATATTACCACAGATAAATAGATACCCCGCA
CGTCGATAAAGCTGCCATAAAACAAGGTTTCCTCTCCGGACCCCGGCTCG
GCGGCGGACTGGGCTGTCACGTGAACGTGACTTTTTGTTTTCACCTGTGA
CACGCTAATTTATATGCAAATATCTCGTAGAAGCCCTATTTGTTTTCCGG
GGTGTGCTTTCTCACGTTATTAGTCTACATAAGACATACATACATATCCC
GGCCCGTGGCCACAAAAAGCACGGCACACTCTCGACGCCGCTGATGATGC
GAAGAAAAAAATTGTGCCCGGGTTCCGATCCCGGTTGGTTGTTGTATTCC
TCATGCCAGCAAAAGGGCTCCATTCAGAGCATTTTGTGTAAGAAGTACTT
GTACATTAGAACATACTGCTGTATGTGTCTATTTATGTGCCCGTCGGGTG
CGAAATTGATGTACAGCCAATGCGGCGAGATTCATTCCGAGTTTTTGTAC
CTGCATCTCCCAGGCCATCTGCATGCATGTGAATGCCGTGTACGCAGCGA
CCAAAATTGGTGCACCGCTTTTATGTGAATTTGCTGGGACCCTCGTCCGA
TGGCTGGTAAACGCGTGGGGTATCTATCCGCCTTCAAAAGCAAAATAAAA
ATGGAATAAAATTAAAGTGAAGCGCACTCGATGCCCCATTCATTTGCCGT
CCGAATTGGCGCTCCTGCCTGCCTTCCCGCTCTGGTGTAGACCTTCTTGT
CCTCACACAAGCCGTGCCACCTCTGTTGGTATGTTCCAGGACGTACACTG
TGCAGTGGACCGGTACCGGCGACAACAACCGCTTCGAGATCGACCTCTAC
TACTGCGGCTCCATGTGCTTGGGGGTGAGAGGACGGTTCAGTTGTTTAAA
GAGCGGCGGCAATTACGCGCAGCTATGCGTTGTTTTCTGCGCTGTTTTTG
CTTAGAAATTGCCCAAGAAAGCCGTTTGCACGGAGAAATCGGAAAATTAT
CTGGATGAGGCCGAGAGTGGGAAATAGGAACACGAATAGTCTATTGTTCT
CCTCTGACCTTTTTTGCCCCCCCCTCTCTCGCCTCCCCACCTCGATCGCA
ACAATATCAGGACGAGTGCGGCGAGTGGGTGACCGCTCTGTGCCCGTACG
GCGAGGACGGCTGCCCTGACAACGAGGGTGACTTCGACATCATCATGCCC
GAGCCCATGATGGGCACCTCCGGCTCCGGATACAAGGTAAATGGGCGAAA
CCTATAGCTGCCCCCGCTGTGCTGCTGATACTGATTCCTATCGTGCCAGG
AAGGACAAGACAAAAAGACGCACTGCGTTTGTGCTAATTTGTCGTAAGCT
GAAGTGCGCTGCGCCGCCCCTATCGAACAGCAGCGAAGGGAATCGATCCC
ACCACACTCTCGCGATATGCGGGGGGGTTCAGCTACGCAACGCTGCTTGC
TGCACAAGTTCATCAAATAGCTTTTGGAGTTCCGCACATACATATTTAAT
ACCGAACTCGAGTTACCCACGACTTGACTTTTTCCTCCTGCCGCGTCCCG
CGACTGCTTCCTGGTAGGTGCGCGTGGCGGACGTGAGCGACGAGGACAAC
ACGGACTGCTCTGACGAGTTCTACCTCCTGGCCTCCACCGAGGCCCCGTC
GGTCGGCGACGCCGACGGCCCGTACGTGATGGTCACCTCTCCCGCTGAGG
GTGACTCCGCGGAGGCCGGAGAGGAGTACACTGTCGAGGTGAGAGAAGGC
ATTTCCTTTCCTGGCCGATGGATGATAGGATCACACGCACACGCGAGTGA
TTCGTCCATGGTGGGGGGGCTGGTTGGTGTTACCATGTAGTTGGTCGTGT
TGACGGTCGGCGGTTCCTCCTTTTTATCCCTGCCGCGGTGTGCGGTGTCG
AGCTGGCCCGGCCGGATTGCGTGCGGCGGTCGTGACTGGACTGGTGTGTT
CATCGAAAAAGAAACGAACCACTGTCAAAGTGAAGAAAGGGAACAGGTTT
GTGCTGGGGACACCCTTGAGATCGCAGCAACATGTGTAGTCTTATGCTTT
TTATGTTGTTAGTCCCATTTATTTCGGTATATCCGTCCCTTCTTCTTCTT
GACCTCCTGCCTGTGCTGCTTTTTTCGGGTGTCTAAAAGTTCCCCCTGTT
GTCAAAACACGCTCGTCTTGTCGCCCTTCCTCCCGCAGTTCGACTACGAC
AACGGCCTCGGATCCTCGGTGGGCCGCTTCGCCATCGACCTCTACTCCGC
CGCCGGATCCGGAGACTGCGGTACTTTCATGTACACCCTCTGCGACAAGC
CCACGATCGGCTGCAAGGACTCCAGTGAGTGACTGTACTTCTTATCTGCT
TCCTTGCTTCCTCCATGCGTGATAAAAAGATTCCACGCTAAATAGATCGA
CTTCTGCTCCTCCATTCTGTGTTGTCTGTTTTGCCCTTGACCAACTGTTG
GATATGCCTGCCCCCCCTTCGGACGTCGACAAGTTGTCTCTTCTCATTCC
CCGCACCACGTTCAAGCCCTGATGACGACCGCCCTTCCGCATGCTTAACC
GACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCTTG
TCACAAAAACAACAGCCACCGCGTACCCCACCCAGANNNNNNNNNNAAAA
GTTTTTTCTTTCCCCTCCCCCCCCCCCCTTCAACCCCTGATGGCCCCCCC
CCCTCCCCCTTTTTACCCCCCCCCCCCCCCCCCCCCCCCCCGCGCCATTT
TGTTTTTGCAGTGGGCGACTACGACGTCGAGATCCCGGAGAACGCCGAAG
CGGGCACCTACAAGATCCGCGTGGGTGACTACGAGTTCCCGGACGTGTTC
GGCTGCTCCGGCGAGTTCGAGATCGAGGGCGGTGGTGACAGCGGCGACAG
CGAGAGCGGCGACGGTGGCGACAGCAGCGACAGCGGCGACGACAACATGT
CTATGTCCATGTCTTTCCGCTTCTAAGCGAATAAATCATCCCCAAGATAA
AAAAAAACGGGACCGATATATAATTTGTGAGAGTGAAGAGGCCAATCGGG
GCTTTTTTTTCAACGCCGCCTGTAACATGCACAGAGGGGCGTGAGGAAGG
TTTCTTTTGATTTGACGCTCGCTCGTCGCGTGCCCTATTATGCGCGCGTC
TGTGGATTTCTTGTCTGTGGGTTCTCCTGAACCAGTGACGATGAAGGCGG
AGGTAGTCTGCTGCTGCTGCTGCTGTGTGAACAGTGCGCAGAGGAACGAC
GTGTAGGGGCAGAGGAGTGTTGGGGATGCAGTCGGTGACGTTATTACCAA
CCCCCCTCGCCTAAAAGTTGTGAAAAGGCATCCTGCGGCTCCCCAGTTCT
TACTTACGCGCGTTATTTTCTGGATAAACGAGACGGGCAACGTTGAGGGC
TCTTGTGGCGCTCGCTTGACGGCGATTTCCGCCCTCAGCATTTTTCTTAG
TATTTCAGTTTCGGCCTCTTTTTCATTTTCGTTATTTATTTATGAATTTA
GCTGCCTTCCCTATTTGTATCGCCCACCGGTGGCCTTCCATGTTGAAATA
TGGTACGGCACGGGACAGCGGGGAGACACTCTTTCGGAGTGAGCTGGCCT
GAGAAACCACTCCATGGAAATGTTTCTAGTTATTTCGCGCTCTTGAGCTC
CGTTTTTTTTGTGTCATCCATCCCCATTGTGCTAGTGTCGTGAGGCGTAC
CGAATGCTTTTTGTTTGGTCTCACGTTGGTGGTGATGGGGGCAGGTATAT
AAGTAGGCGGCGGATTCCCCGTTGTCGGTGGGTAATGTACGAGTCGAGTC
GGCCGATGTAGGGAAACAAACCGATTTCCCGAGACGAGGGTAGTGGAAAG
AAGGTGGTGCGGCGCCACCATCGTCGCCCGCTGGGCGTGTGGGACGTAGA
TGTACATGGTAGGTTGACGTATGCTGCCTTGGCAAAGCATCAAGGTCTCT
GTTCGGGAAAATGGGAGGGGGGGAAGAGGCGCGGGACAGGAGAGAGAGGA
GATCGACTCTCGACTGACTACACGATCAGCACCTTTTTTCTCCAGAATGT
TGGCTTAATTTATGGCTTTTTCCATTCCATTCGCAGGGCCACGGCTGTGT
TCCTTGGACACCAGGCGCTGTGTGTGTGTTTTTCCGTCCTATTTTTGACC
TGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5535:1427..7230-

>mRNA_L-elsbetiae_contig5535.13826.1 ID=mRNA_L-elsbetiae_contig5535.13826.1|Name=mRNA_L-elsbetiae_contig5535.13826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1680bp|location=Sequence derived from alignment at L-elsbetiae_contig5535:1427..7230- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGCACTGCTTTCGTTGCTCTGGCATGCGGCATGCTCGGCACTGC
CGCCGCTCAGCTGACGGTGGTGACCCCCAGCGAGGGCGACACGGTTGTGG
CCGACAGATGGCTCGCACTGCTTTCGTTGCTCTGGCATGCGGCATGCTCG
GCACTGCCGCCGCTCAGCTGACGGTGGTGACCCCCAGCGAGGGCGACACG
GTTGTGGCCGACAGGACGTACACTGTGCAGTGGACCGGTACCGGCGACAA
CAACCGCTTCGAGATCGACCTCTACTACTGCGGCTCCATGTGCTTGGGGG
ACGTACACTGTGCAGTGGACCGGTACCGGCGACAACAACCGCTTCGAGAT
CGACCTCTACTACTGCGGCTCCATGTGCTTGGGGGACGAGTGCGGCGAGT
GGGTGACCGCTCTGTGCCCGTACGGCGAGGACGGCTGCCCTGACAACGAG
GGTGACTTCGACATCATCATGCCCGAGCCCATGATGGGCACCTCCGGCTC
CGGATACAAGGACGAGTGCGGCGAGTGGGTGACCGCTCTGTGCCCGTACG
GCGAGGACGGCTGCCCTGACAACGAGGGTGACTTCGACATCATCATGCCC
GAGCCCATGATGGGCACCTCCGGCTCCGGATACAAGGTGCGCGTGGCGGA
CGTGAGCGACGAGGACAACACGGACTGCTCTGACGAGTTCTACCTCCTGG
CCTCCACCGAGGCCCCGTCGGTCGGCGACGCCGACGGCCCGTACGTGATG
GTCACCTCTCCCGCTGAGGGTGACTCCGCGGAGGCCGGAGAGGAGTACAC
TGTCGAGGTGCGCGTGGCGGACGTGAGCGACGAGGACAACACGGACTGCT
CTGACGAGTTCTACCTCCTGGCCTCCACCGAGGCCCCGTCGGTCGGCGAC
GCCGACGGCCCGTACGTGATGGTCACCTCTCCCGCTGAGGGTGACTCCGC
GGAGGCCGGAGAGGAGTACACTGTCGAGTTCGACTACGACAACGGCCTCG
GATCCTCGGTGGGCCGCTTCGCCATCGACCTCTACTCCGCCGCCGGATCC
GGAGACTGCGGTACTTTCATGTACACCCTCTGCGACAAGCCCACGATCGG
CTGCAAGGACTCCATTCGACTACGACAACGGCCTCGGATCCTCGGTGGGC
CGCTTCGCCATCGACCTCTACTCCGCCGCCGGATCCGGAGACTGCGGTAC
TTTCATGTACACCCTCTGCGACAAGCCCACGATCGGCTGCAAGGACTCCA
TGGGCGACTACGACGTCGAGATCCCGGAGAACGCCGAAGCGGGCACCTAC
AAGATCCGCGTGGGTGACTACGAGTTCCCGGACGTGTTCGGCTGCTCCGG
CGAGTTCGAGATCGAGGGCGGTGGTGACAGCGGCGACAGCGAGAGCGGCG
ACGGTGGCGACAGCAGCGACAGCGGCGACGACAACATGTCTATGTCCATG
TCTTTCCGCTTCTAATGGGCGACTACGACGTCGAGATCCCGGAGAACGCC
GAAGCGGGCACCTACAAGATCCGCGTGGGTGACTACGAGTTCCCGGACGT
GTTCGGCTGCTCCGGCGAGTTCGAGATCGAGGGCGGTGGTGACAGCGGCG
ACAGCGAGAGCGGCGACGGTGGCGACAGCAGCGACAGCGGCGACGACAAC
ATGTCTATGTCCATGTCTTTCCGCTTCTAA
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