mRNA_L-elsbetiae_contig553.13819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig553.13819.1
Unique NamemRNA_L-elsbetiae_contig553.13819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: D7FX13_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX13_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 6.920e-121
Identity = 187/242 (77.27%), Postives = 206/242 (85.12%), Query Frame = 1 
Query:  100 MGGSPARPGTDASKPPSTQR-LSLTDVYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAYIVAAFVLGAPKLYMHMIRQRSKQLGGTASAGGEKVKAS 822
            M  + AR GTD ++  +     SLTD YLLLYN ACAVGWNLT+YKIG A+LEGG VRDAV ATHD V ALQL+STLELVHAF GLV+S+PMN+FMQV GRDLALFSVVTAFPPVRDSPWVL+MF+AWATSEVIRYPFYAL+IAGMCPP+L WLRY+ F+ LYPLGFAGELGTWIVGLPHIKAVGLP VPGLPEGSS+Y LYAYIV AF +GAPKLYMHM+RQR KQL      GG KVKAS
Sbjct:    1 MSAASARTGTDNTRVATYGGGPSLTDAYLLLYNGACAVGWNLTLYKIGGAILEGGDVRDAVEATHDYVAALQLVSTLELVHAFVGLVKSNPMNVFMQVFGRDLALFSVVTAFPPVRDSPWVLLMFTAWATSEVIRYPFYALNIAGMCPPVLQWLRYSAFVLLYPLGFAGELGTWIVGLPHIKAVGLPGVPGLPEGSSIYVLYAYIVFAFAIGAPKLYMHMLRQRKKQL-----QGGGKVKAS 237
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BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: A0A835Z8Y0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y0_9STRA)

HSP 1 Score: 167 bits (422), Expect = 8.030e-44
Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 1 
Query:  280 NATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAYIVAAFVLGAPKLYMHMIRQRSKQLGGTASAG 801
            NAT  LVV LQLLSTLELVH   GL R      F Q+GGRD+ LF    A P VR S    ++++ WA SE+IRYP+YA ++  +CP  LHWLRY+ F+ LYPLGFA E+G ++V  PH+KA     + GLPEG     L AY++ A  +GA  L+ +M++ R +QL   A  G
Sbjct:   17 NAT-PLVVGLQLLSTLELVHVLLGLTRGGAAQTFAQIGGRDICLFLTAAAEPAVRRSWVAALLYATWAASEIIRYPYYATNLLEICPDFLHWLRYSAFMLLYPLGFAAEVGCFVVAYPHMKAGDKYRIEGLPEGGQFAVLGAYMLFAHAIGALTLFKYMLKARKRQLRQPAVTG 189
[Close]
BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: A0A2P6TVL7_CHLSO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVL7_CHLSO)

HSP 1 Score: 155 bits (392), Expect = 2.260e-35
Identity = 86/204 (42.16%), Postives = 114/204 (55.88%), Query Frame = 1 
Query:  211 GWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAYIVAAFVLGAP----KLYMHMIRQRSKQLGGTASAGGEK 810
            GW + +Y++G  ++    +  A     D+V   QL S LE++HA  GLV  SP+   MQ  GR   LF VV A P V++ P V  MF AWA SE+IRYP+YA S+AG CP  L WLRYT FI LYP+G  GE+ +    LP IKA GL  +  LP  ++    Y   +   +   P    +LY  + RQR K+LG  A+  G K
Sbjct:  618 GWAVALYRVGGHVIATRSLEGAYTVAGDVVGCFQLASALEILHAALGLVGGSPLTALMQWAGRSNVLFGVVAAVPEVQNRPAVGAMFLAWALSEIIRYPWYAASLAGACPHWLTWLRYTAFIGLYPVGVLGEMKSVFDALPFIKARGLRSL-ALPNAANWGFDYHTFLVVLLCLYPFLWFRLYAFLFRQRRKKLGAPAAVAGSK 820
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BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: F7VSA9_SORMK (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) TaxID=771870 RepID=F7VSA9_SORMK)

HSP 1 Score: 132 bits (333), Expect = 1.640e-31
Identity = 79/218 (36.24%), Postives = 114/218 (52.29%), Query Frame = 1 
Query:  178 YLLLYNTACAVGWNLTMYKIGTALL-EGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPD--VPGLPEGSSMYALYAYIVAAFVLGAPKLYMHMIRQRSKQLGGTASAGGEKVKAS 822
            YL+LYN A AV W + + ++ +  L  G G    V    D     Q  + +E+ HA  G+V +      MQV  R + ++ +   FP +  S W   M +AW+T+EVIRY ++AL      P  LHWLRY+ F+ LYP+G + E+   I GL     VG  D   P  P     YAL A ++ +++ G+  LY HM+ QR KQ+GG A    +K K S
Sbjct:   10 YLVLYNAASAVSWAMILVRVASVYLANGAGAVPLV--VDDFARVTQTFAVMEIFHALTGIVPAPLFTTLMQVASRLMLVWGISYPFPQLNTSTWYSSMLTAWSTTEVIRYTYFALKQFDFIPYFLHWLRYSAFLVLYPMGISSEVAMIIKGL-----VGPADKLAPWYP-----YALVA-VLLSYIPGSVILYSHMLSQRRKQVGGGAKGAAKKAKKS 214
[Close]
BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: A0A7J7DEE2_TRIWF (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DEE2_TRIWF)

HSP 1 Score: 132 bits (333), Expect = 1.680e-31
Identity = 76/209 (36.36%), Postives = 110/209 (52.63%), Query Frame = 1 
Query:  163 SLTDVYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFA-GELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAYIVAAFVLGAPKLYMHMIRQRSKQLGG 786
            S T +YL  YN   + GW +  Y+I    +E   V  A  +  +L+  LQ L+ LE++H   G+V S  +N  MQ GGR   L ++V     V++ P + + F AW+ +EVIRY  YAL+  G CP  + +LR+T+FI LYP+G A GE+      LP IK   L          S Y     ++  +     KLY+HM +QR  +LGG
Sbjct:    3 SPTKLYLFTYNLLQSFGWTIAFYRILIDFVETKSVNGAYASAGELICLLQKLAFLEVIHGVLGVVPSGVLNPLMQWGGRTHFLLAIVRPVVEVQELPSIFITFVAWSLTEVIRYTHYALNCVGSCPYWITYLRFTLFIGLYPIGIAPGEMWLMYEALPFIKVKNLYANSFASLRFSYYDFVRVLLLCYPFLWLKLYLHMFKQRRSKLGG 211
[Close]
BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: A0A835Y910_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y910_9CHLO)

HSP 1 Score: 132 bits (333), Expect = 1.880e-31
Identity = 80/217 (36.87%), Postives = 107/217 (49.31%), Query Frame = 1 
Query:  160 LSLTDVYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAYIVAAFVLGAP----KLYMHMIRQRSKQLGGTASA 798
            + LT  YL LYN A AVGW      +    ++        +    L+  LQ  S LE VHA  GLV SSP++  MQ GGR   LF VV     +    + LVM   W+ +E IRYP YA +  G CP  L W+RYT+FI L+PLG   E+G     LP + A   P    LP   +    Y   +   +   P    +LY  ++R RSK+LGG + +
Sbjct:    1 MRLTQAYLALYNAAQAVGWATAFGSLVYGFIQEQSNEQIYDRAAPLIGWLQFASLLETVHAALGLVPSSPLSALMQWGGRSNCLFCVVQPIRALHSDVYALVMLGCWSAAETIRYPQYAAATLGACPGWLTWMRYTMFIPLFPLGTMAEMGLMAAALPDL-ARRRPYSLDLPNKWNFAFHYHTFIQILLFLYPLLWWQLYSQLLRARSKKLGGASKS 216
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BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: UPI000D7315F7 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D7315F7)

HSP 1 Score: 133 bits (334), Expect = 2.070e-31
Identity = 78/214 (36.45%), Postives = 115/214 (53.74%), Query Frame = 1 
Query:  178 YLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAY----IVAAFVLGAPKLYMHMIRQRSKQLGGTASAGGE 807
            YL+ YN +  +GW + M+ I   +   G V         +++  Q  + LE+VH+  GLV+S+P+    QV  R   L+ VV + P V+   +V     AW  +E+IRY FY  S+ G  P  L W RYT+FIALYP+G  GE+ T    LP++KA GL  +  LP  ++M   Y Y    I+ +++   P+LY HM+ QR K + G   A  E
Sbjct:   23 YLIAYNVSQMLGWIILMFMIVCHIYREGNVTLLYKEVEQVLLIFQTAAVLEIVHSSLGLVKSNPILTTFQVFSRVFLLWGVVWSVPQVQTEVYVFYFLIAWTITEIIRYSFYFFSLLGGVPYTLKWCRYTLFIALYPVGVMGEVMTIYSALPYVKASGLYSL-FLPNPANMSFNYFYYLWFILFSYIPVFPQLYGHMLSQRRKVICGGQHAKQE 235
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BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: A0A5J4XVE1_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XVE1_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 2.870e-31
Identity = 74/201 (36.82%), Postives = 104/201 (51.74%), Query Frame = 1 
Query:  190 YNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAYIVAAFVLGAPKL----YMHMIRQRSKQL 780
            YNTA A GW   +Y+  +      G       T+ +V   QLLS LE++HA AGLVR SP+   MQ  GR   LF+++     +  +P   V+   WA SEV+RYP+YA S+   CP  L WLRYT+FI LYP+G   E+   +  LP +K+  L  +  LP   +    Y   +   +   P L    Y  ++ QR K+L
Sbjct:    8 YNTAQAAGWAFALYQCVSTFWSADGYATVYENTNAVVRCFQLLSALEILHAAAGLVRGSPLTALMQWSGRSNVLFAILHRVSQLWTNPAAAVLIYVWALSEVVRYPWYASSLLNCCPSWLTWLRYTLFIPLYPVGMLAEMVLMVKALPFLKSQKLNSI-SLPNVLNFGFDYHMFIQGLLFVYPFLWLFLYQTLLHQRKKKL 207
[Close]
BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: A0A251UJ87_HELAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UJ87_HELAN)

HSP 1 Score: 131 bits (330), Expect = 4.620e-31
Identity = 72/205 (35.12%), Postives = 108/205 (52.68%), Query Frame = 1 
Query:  166 LTDVYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYALYAYIVAAFVLGAPKLYMHMIRQRSKQL 780
            L+D+YL  YN+  A GW + +++I T       V     +  +L+  LQ L+ +E++H   G+V S  +   MQ GGR   L ++V     V++SP VL+ F +W   E+IRYPFYALS  G CP  L +LRYTVFI +YP+G  GE+      LP I    L          S Y     ++  +     +LY+++ +QR  +L
Sbjct:    4 LSDIYLFSYNSLQAFGWAIALFRILTDFFSTKSVNGGYASAGELICLLQTLAFIEVIHGVLGIVPSGFLFPLMQWGGRTHFLLAIVRKIYEVQESPAVLITFVSWCCIEIIRYPFYALSCLGSCPSFLTYLRYTVFIVIYPIGVVGEMWIMYQSLPVILEKNLYADYFAAVPFSYYTFVKAVLICYPFLWLQLYLYLFKQRRSKL 208
[Close]
BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Match: A0A0B1S5K2_OESDE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1S5K2_OESDE)

HSP 1 Score: 130 bits (328), Expect = 8.560e-31
Identity = 77/207 (37.20%), Postives = 109/207 (52.66%), Query Frame = 1 
Query:  175 VYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLLHWLRYTVFIALYPLGFAGELGTWIVGLPHIK-----AVGLPDVPGLPEGSSMYALYAYIVAAFVLGAPKLYMHMIRQRSKQL 780
            +YL  YN    +GW + + K    L E     +  N+    V   Q L+ LE+VHA  GLVRS      MQV  R L ++ ++      R S  V ++ +AW+ +EVIRY FYAL + G  P  L W+RYT+FI LYPLG +GEL T I  LP +       + +P+   +  G S YA+       ++ G P+LY++M  QR K L
Sbjct:    6 LYLFAYNAVQVLGWGIILLKTLYGLFERRSWPELYNSVEVEVKIFQTLAILEIVHAAVGLVRSPVGTTAMQVWSRLLLVWPILYNCATARRSVGVPMLLTAWSVTEVIRYSFYALGLFGAVPSFLTWMRYTLFIVLYPLGVSGELLTLIGSLPEVAEKKYYTIEMPNPANM--GFSFYAVLIISALMYIPGFPQLYLYMFAQRKKVL 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig553.13819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX13_ECTSI6.920e-12177.27Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835Z8Y0_9STRA8.030e-4448.28Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2P6TVL7_CHLSO2.260e-3542.16Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
F7VSA9_SORMK1.640e-3136.24Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7J7DEE2_TRIWF1.680e-3136.36Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835Y910_9CHLO1.880e-3136.87Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI000D7315F72.070e-3136.45very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A5J4XVE1_9CHLO2.870e-3136.82Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A251UJ87_HELAN4.620e-3135.12Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A0B1S5K2_OESDE8.560e-3137.20Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig553contigL-elsbetiae_contig553:9824..14857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.9
Seed ortholog evalue1.4e-101
Seed eggNOG ortholog2880.D7FX13
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3-hydroxy-lignoceroyl-CoA dehydratase activity
EggNOG OGsCOG5198@1,KOG3187@2759
EC4.2.1.134
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Ec32 ortholog descriptionPutative tyrosine phosphatase
Ec32 orthologEc-10_003910.1
Exons5
Model size2488
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.4889565-UTR-L-elsbetiae_contig553:9823..99221622816582.4889565-UTR-L-elsbetiae_contig553:9823..9922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig553 9824..9922 +
1691683663.1214726-UTR-L-elsbetiae_contig553:9823..99221691683663.1214726-UTR-L-elsbetiae_contig553:9823..9922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig553 9824..9922 +
1622816582.5571294-UTR-L-elsbetiae_contig553:13194..148571622816582.5571294-UTR-L-elsbetiae_contig553:13194..14857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig553 13195..14857 +
1691683663.183465-UTR-L-elsbetiae_contig553:13194..148571691683663.183465-UTR-L-elsbetiae_contig553:13194..14857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig553 13195..14857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.501858-CDS-L-elsbetiae_contig553:9922..101771622816582.501858-CDS-L-elsbetiae_contig553:9922..10177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 9923..10177 +
1691683663.1345124-CDS-L-elsbetiae_contig553:9922..101771691683663.1345124-CDS-L-elsbetiae_contig553:9922..10177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 9923..10177 +
1622816582.5134346-CDS-L-elsbetiae_contig553:10766..107991622816582.5134346-CDS-L-elsbetiae_contig553:10766..10799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 10767..10799 +
1691683663.14371-CDS-L-elsbetiae_contig553:10766..107991691683663.14371-CDS-L-elsbetiae_contig553:10766..10799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 10767..10799 +
1622816582.5239203-CDS-L-elsbetiae_contig553:11497..116101622816582.5239203-CDS-L-elsbetiae_contig553:11497..11610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 11498..11610 +
1691683663.152993-CDS-L-elsbetiae_contig553:11497..116101691683663.152993-CDS-L-elsbetiae_contig553:11497..11610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 11498..11610 +
1622816582.5342832-CDS-L-elsbetiae_contig553:12065..122071622816582.5342832-CDS-L-elsbetiae_contig553:12065..12207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 12066..12207 +
1691683663.163141-CDS-L-elsbetiae_contig553:12065..122071691683663.163141-CDS-L-elsbetiae_contig553:12065..12207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 12066..12207 +
1622816582.5464911-CDS-L-elsbetiae_contig553:13011..131941622816582.5464911-CDS-L-elsbetiae_contig553:13011..13194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 13012..13194 +
1691683663.1746361-CDS-L-elsbetiae_contig553:13011..131941691683663.1746361-CDS-L-elsbetiae_contig553:13011..13194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig553 13012..13194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig553.13819.1prot_L-elsbetiae_contig553.13819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig553 9923..13194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig553.13819.1

>prot_L-elsbetiae_contig553.13819.1 ID=prot_L-elsbetiae_contig553.13819.1|Name=mRNA_L-elsbetiae_contig553.13819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
MGGSPARPGTDASKPPSTQRLSLTDVYLLLYNTACAVGWNLTMYKIGTAL
LEGGGVRDAVNATHDLVVALQLLSTLELVHAFAGLVRSSPMNIFMQVGGR
DLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPLL
HWLRYTVFIALYPLGFAGELGTWIVGLPHIKAVGLPDVPGLPEGSSMYAL
YAYIVAAFVLGAPKLYMHMIRQRSKQLGGTASAGGEKVKAS*
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mRNA from alignment at L-elsbetiae_contig553:9824..14857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig553.13819.1 ID=mRNA_L-elsbetiae_contig553.13819.1|Name=mRNA_L-elsbetiae_contig553.13819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5034bp|location=Sequence derived from alignment at L-elsbetiae_contig553:9824..14857+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGACCTCTCGGAGAGTGGAAGGCAACACTGAGAGACTGAGGGAGCAAC
TGCAGCATATAAAACAGGTAGATAAAGCACACACCCCAGGCGCGGAGAGA
TGGGCGGCTCACCGGCAAGGCCCGGCACGGACGCCAGCAAGCCTCCATCG
ACACAACGCCTCTCTCTCACGGATGTCTACCTGCTGCTCTACAACACGGC
GTGCGCGGTGGGGTGGAACTTGACCATGTACAAGATCGGCACGGCGCTGC
TGGAAGGGGGCGGCGTGAGGGACGCTGTCAACGCGACGCACGACCTGGTG
GTAGCGCTGCAGCTGCTATCCACGCTTGAGCTCGTCCACGCCTTCGCTGG
TCTGGTGAGGGAGGAGTGAAACAATGCTTGACTTGAGGCAAGATACAGAG
CAGCAGAGAGTGGCTGTTTTTTCAACATGCACTGGTTGCGGATTTTTCTC
AGTTCGTTTGATAGTCCTCCGCGTCAACTTTTGGATGACAGCGATATGGC
ACCCCCGGCACCCTGACCCTGCAAGATGACACTTTGTGTGTGCCAGCGCC
ACTTATCCCAGGGCTCTCTGCAACAAAGACGACGGCAGTTGTATCTACTA
CGCCAAAACATGCTGCATGCTGCCTCATTTCGCCGTCGCTGAGAATCTGT
ATATGGATCCATCATGCGTCTGGGAAAGCGTTCCGTCTCTGCTGTGTACA
TACACTTTCAATTCAAACAGTTCCGTGAGTGAAGATGCACCGACCGTAGG
AGCCTAGCTGGGTATTCATTAATCCGGCTTTGTCCATTGAGAGGCCTGAC
AGCGGCCCCGCGGCTGTACAATACGGTGGCAATACCGGCCGATCGCTGAC
GAGATCACGAGGAAAGAGCAACTAACCCCCCGCGTATGCCTCCCCGTCCG
CCGCTGCCGCTGCCACCGTTGGCACAAACACACGCAATTGCAGGTCAGGA
GCAGCCCCATGAATATTTTCATGCAGGTGAGGAATGGTGTGTATTGGGTG
TGGCTCGTGGCTGCCTGTGGTTGCGTTGTGTGATCGTCGTTGTCCTCCTC
TCCCCTCCCCTCCCAACAAGGCACGTTCCTCGCCTGCGTGTCGCTGTTTG
GCGGTTCTGATAGCGTTCGTTCCCTCAAAAGTATCCACCTACATTTGGAT
TAGTACCCCCCATCTAAGTGCACCGCAAGGTGTAGTACACGTCTCCACTT
GGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACACACACACA
CACACACATACGGGGGGAGGTACTGGATGGAGAGATCGGAACGGTTTTTA
ATGTGAAGAAACAACGACAACAACAACAACAACAACAGTAACAACAGCAA
CAACAGCAACACGGCAAAGGGCGAGTCAGAGAGAGCTGTGATGAAGAAAT
CCCAACCCGACCGACCCCGAACAAGAATCTGCCGCCGTTTTCATCTGCGC
AGCCCCTGCGTGTGGTGTGTAAACAACTGCTGTGATGCACACGTTGGCGC
CTTCCGCCCGGCACCGCATGCTGCAGTCAACCCCTGCGATCCTGCAAGAT
TGGCCGAACAAAACTACGTACGTACCTTTTCTGATGCTGTTTTTCGCTCG
CGCGCCGGTCCCTACCCCTATCCCCCCCCCGCCCCCCCCTCCCGTCTTTT
CCGCTTGCACTTTCTTCCGTGCAGGTGGGGGGGCGTGATCTGGCGCTATT
CTCGGTGGTGACGGCCTTTCCACCGGTGCGGGATAGCCCCTGGGTGCTCG
TGATGTTCTCGGCGTGGGCGACGTCCGAGGTTATCAGGTAGGGGGGGGAG
TGATGGGTGACGCATAGTGAACATACCGAACATCCGTCACCTACCGTAAC
CGCTTTTTCGCGCGCGGCGCAGCCTGCACTTCTTCTGTTCTGCAAAGCTC
GTACATAAACTTTCGCCGCAGAGCCCTGCTTTGCCTCGGCTACGACTCAG
TTCGAGCACCCTCCGCAAGCGGCAGGCACTACATACGAGAGCAGCAGTAG
CAGGGACACCGCCGTGCACTCCTATTTAGCTCCGGCAGAACCATCGAGCC
CGCCCCCTCAACACCATTATCTTAAATCGTGTAAGTAGATAGTAATTTTG
CTCGCGTTGTGGGAAACCCGCCGTTGAATTCTCCTATTCAGCTTTTCTTG
CGTGCTCGGTCACCCGCGTGCATCCGCTTTTCCCCTGAACCGTACGGTGG
GTCTTTGTTGGTGCACATGCCCCCCCCCCCCTGCTGCCCCAGATATCCGT
TCTACGCCCTCAGCATCGCGGGGATGTGCCCCCCACTGCTGCACTGGCTT
CGGTACACGGTCTTCATAGCGCTGTACCCCTTGGGCTTCGCGGGAGAGCT
TGGGACGTGGATCGTGGGATTGCCACACATAAAGGTGGGTCAGGGGCATA
AGAGGGGGGAGGTCGGGGGACGAGTGGGATAGCGCCCCCCAGGCGGGCGC
CGCCAAGGCTGCTCCAAAGCCCTAGCGAGGAGGTGTTACCGCGCCCTGGT
GAGCCGTGCAGTAGTTCCTGCCGTCGCTGTGCGGAGCTCTGTATTCTTCT
GCAGTATGTAGCAGTGTTTTCAAAGTTGGAGGCTGTTTTTTTTATTTCTT
CGGATTTTTTTTTTTCTTTGCAATTGTTTTTTCTTCACATTTATTTCCAG
TGCTTGATGGGCTCCCTGTCACGAGGACATCTTGCCGGAGTACTGAACCG
TGGTCACACAGAGGGGCTCCTTTCCCCAAGGCCCCCACTCCCCCGTCTGC
GGTGCTTGCCTAGGATTTTTGTCGCGAGAAGGGTTCAGCTGTCCCTTTTC
CCTCGTCGACGGTGAGGTCGAATAGGAGAGGACTCCTAATCTTGCGTACT
TCGTATACACACTAGACTGACTGTGTACAGCTTGTGTGGGACAATGGAAC
GACGCCCGTTGCCGTGAGGGTATATGGGTTTTGCCCGCGGCAGCGATCGG
GGGCGCCCTTTATCCGCAGTTGCTGCTTTACCGCACCCTCACCCGCTTTT
TTTTTTTTTTTTTAGCTGTTTTGAAGCATGTCTTTCACTCTTTTTTTTTT
TATTCTTCTTTTTTTTTTTTTTTTGCCGCTGAGTTGAAGGATGCGCTCCA
CACTCTTTTGTCTAACTCGCATTTTTTTTTTTTTCTTGACGCGGCGGCGC
ACGAACACACTCCCCCCCCCCCAAAACGAAAAAAACAGGCGGTTGGCCTG
CCTGACGTGCCTGGCCTTCCGGAGGGCTCCTCCATGTACGCCCTGTACGC
TTACATCGTCGCTGCGTTCGTGCTGGGCGCGCCCAAGCTCTACATGCACA
TGATCCGCCAGCGCAGCAAGCAGCTGGGGGGGACGGCGTCGGCGGGAGGC
GAGAAGGTCAAGGCTTCCTGATAAACCTTGAGGGTTGCCGTATAGGAGTA
CTACATACGCAAGATAACACACCCCCTGGACCGATTTTCAAAGCTTAAGT
TCTTCACAGCGAGAGAGTGTCGGTCAGTCCCGAAAAGGGCGGCGGTGTTG
GACGTATCTCATCAAGAGGTGCCCGAAAACGTGTCGTTTTGGTCTTGGAA
ATCATACTCGTCGCGGAGTAGCCGAGCTTTGAAAACCGGTCCAGGGGGTG
TGTTATCTTGTGTCGTTTATACGGTATACATAAGACTACTTCTTGGATCT
GGGTTACTACTGTGTGGAGATGGCTGCTGTCTTGTAGGTACATACATCAG
TAACCTTTCACCGTTTCTGGTTCTATCTGCTTCTTTGCATGTGTTCAGTT
GTCTTGTATGGTACAGTCTACAACAGTGAATGTACTCAACAACGAGAGAC
GGAAAGAGGGGGCTCTGCGAATCGGGAAACTCTTCGTGTTGTTGATGGCG
CGGATACCCCCCAAGTGGCTTTTGGAAGTGGCAGGGCCTTGTAGCTGTTT
CGCTTGCAGGCATCCACCCGCCTTCTAGGTCAAGTTTGTGTGCGTGAAAG
AGTAGGCGTCAGTACTGACAGAACACCGACCGTGTGCTACCATCTGTGGC
TGGAGAAGGTGCGTTGAGAGGGCTTAAATACACGGGCAAACCAAGCCGTC
TTAAGGGAGCACTCCTTGAGCACTCCTCGAGGAGCACGCAGACAGGACAA
GGAACGATCTGAGATGGCTTGACTTCGGCCATGTGCGGCGAGAAAGGCGC
ACGCAGAGAGGGCAGGGAACGACCTGAGATGGCTTTGGTTTCGGGCATGT
ATATACGCGCCGGTAACGGGTCGGTTACGGTTGGCTCGTGCTCTTGCAAT
AGTTTGAGGGCCGCGCAACACGCGGCGTCTGGCAGCGAATTTGGGAAACC
TGGAGACTTGTGTGGAGTCCGGTTCTCCAGTGTTTCATCCTCTACGAAAA
AAACTAGGCCGTGTGTACATAAGTATGTGTACATATGCATGTCGTGAGAC
GTTTCGCATCCGCCAGAAGCACTCAACAGCGAGCGCCTGTTGAGTCGGAC
GTTCAGCGATGTAGAGAAATAAGGCCTGGGTATAATAGCTCCTTTCCGCA
TCACATATCTACCCCACCTAACAAATTTATCAGGAATAAAGTTTGAAACA
AGATACGGGCCGGGTGCGTGACGCGAGAGTCGCATGCGATGATCCCTGCA
GCAGCAGCTTAGGGGGCCGGTTCTGGTGCGCACCTCGTCGCTGAAAATCG
TCACGCTTGTATCGATGAACTTCGTGTCCACGTGGAGGAGGAAGGACACA
GCTCTATAAGTAGTGGAACCGAGCACGACCGACTCGTCAGCGAGTTAAAA
GGGTAAACGCGAGAGAAGCAAAGACAGGCGAAGTCGGCGAGACAAATGCT
GCGTGGGAAAGAGAGCATGCTTTGCTCGAGTATCTCGTTGAGGTCGGTCA
TGGGGGTGCTGGCGGAACCCCCTGCGGCGGCGGCTTTTCCCCGCGGCCTT
CGCTGAAAAGCGTTCGCGTCTAAGCGTTAGTTACAAGAGGCAGGCCACTC
CCTATTTCTCGTGTCTTTGCCGTCAACCTCTCCGTTTTTCCATTCGGCAA
AACCACCGACTATCGTGTTGCACACACATGCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig553:9824..14857+

>mRNA_L-elsbetiae_contig553.13819.1 ID=mRNA_L-elsbetiae_contig553.13819.1|Name=mRNA_L-elsbetiae_contig553.13819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1452bp|location=Sequence derived from alignment at L-elsbetiae_contig553:9824..14857+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGGCTCACCGGCAAGGCCCGGCACGGACGCCAGCAAGCCTCCATC
GACACAACGCCTCTCTCTCACGGATGTCTACCTGCTGCTCTACAACACGG
CGTGCGCGGTGGGGTGGAACTTGACCATGTACAAGATCGGCACGGCGCTG
CTGGAAGGGGGCGGCGTGAGGGACGCTGTCAACGCGACGCACGACCTGGT
GGTAGCGCTGCAGCTGCTATCCACGCTTGAGCTCGTCCACGCCTTCGCTG
GTCTGATGGGCGGCTCACCGGCAAGGCCCGGCACGGACGCCAGCAAGCCT
CCATCGACACAACGCCTCTCTCTCACGGATGTCTACCTGCTGCTCTACAA
CACGGCGTGCGCGGTGGGGTGGAACTTGACCATGTACAAGATCGGCACGG
CGCTGCTGGAAGGGGGCGGCGTGAGGGACGCTGTCAACGCGACGCACGAC
CTGGTGGTAGCGCTGCAGCTGCTATCCACGCTTGAGCTCGTCCACGCCTT
CGCTGGTCTGGTCAGGAGCAGCCCCATGAATATTTTCATGCAGGTCAGGA
GCAGCCCCATGAATATTTTCATGCAGGTGGGGGGGCGTGATCTGGCGCTA
TTCTCGGTGGTGACGGCCTTTCCACCGGTGCGGGATAGCCCCTGGGTGCT
CGTGATGTTCTCGGCGTGGGCGACGTCCGAGGTTATCAGGTGGGGGGGCG
TGATCTGGCGCTATTCTCGGTGGTGACGGCCTTTCCACCGGTGCGGGATA
GCCCCTGGGTGCTCGTGATGTTCTCGGCGTGGGCGACGTCCGAGGTTATC
AGATATCCGTTCTACGCCCTCAGCATCGCGGGGATGTGCCCCCCACTGCT
GCACTGGCTTCGGTACACGGTCTTCATAGCGCTGTACCCCTTGGGCTTCG
CGGGAGAGCTTGGGACGTGGATCGTGGGATTGCCACACATAAAGATATCC
GTTCTACGCCCTCAGCATCGCGGGGATGTGCCCCCCACTGCTGCACTGGC
TTCGGTACACGGTCTTCATAGCGCTGTACCCCTTGGGCTTCGCGGGAGAG
CTTGGGACGTGGATCGTGGGATTGCCACACATAAAGGCGGTTGGCCTGCC
TGACGTGCCTGGCCTTCCGGAGGGCTCCTCCATGTACGCCCTGTACGCTT
ACATCGTCGCTGCGTTCGTGCTGGGCGCGCCCAAGCTCTACATGCACATG
ATCCGCCAGCGCAGCAAGCAGCTGGGGGGGACGGCGTCGGCGGGAGGCGA
GAAGGTCAAGGCTTCCTGAGCGGTTGGCCTGCCTGACGTGCCTGGCCTTC
CGGAGGGCTCCTCCATGTACGCCCTGTACGCTTACATCGTCGCTGCGTTC
GTGCTGGGCGCGCCCAAGCTCTACATGCACATGATCCGCCAGCGCAGCAA
GCAGCTGGGGGGGACGGCGTCGGCGGGAGGCGAGAAGGTCAAGGCTTCCT
GA
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