Homology
BLAST of mRNA_L-elsbetiae_contig5507.13781.1 vs. uniprot
Match:
D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)
HSP 1 Score: 287 bits (734), Expect = 2.830e-91
Identity = 162/215 (75.35%), Postives = 179/215 (83.26%), Query Frame = 1
Query: 19 MQVTCVAVICALLVATTSVEGFGLSAQRSSFHAHRAM--ASPSARAPRATGRRSSGTAMFFDFGSKKEEKESNARPVAGGTVKGGKKTKIVQEVSPAQLRAQEKAAAIRERSRMAA-KKTEGVFTPPQFEAFKRARKEVPSGNGNAYWEKIAARVPGQDAAACKRVAESMLFEAAVGSKSNYFGGYVETIETQDYVDPEADIMFKINKFFGRGKK 654
MQ TC+A++CA++ T VEGF R S H HRA AS S +A RA RRSS T MFFDFG K E SNARP+AGGTVKGGKKTKI Q+V+PAQ RAQEKA AIRERSR A+ +K+EGVFTPPQFEAFK+ARKEVPSG G+AYWEKIAARVPGQ+AAACKRVAESMLFEAAVG+KSNYFGGY+ETIET DYVDPEADIMFKINK FGRGKK
Sbjct: 1 MQATCIALLCAVVAMITCVEGFST---RPSLHTHRAATTASRSLQASRAGSRRSSQTRMFFDFGKKTE---SNARPMAGGTVKGGKKTKITQDVTPAQRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 209
BLAST of mRNA_L-elsbetiae_contig5507.13781.1 vs. uniprot
Match:
A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)
HSP 1 Score: 130 bits (327), Expect = 1.620e-31
Identity = 77/161 (47.83%), Postives = 99/161 (61.49%), Query Frame = 1
Query: 181 TAMFFDFGSKKEEKESNARPVAGGTVKGGKKTKIVQEVS---PAQLRAQEKAAAIRERSRMAAKKTEGVFTPPQFEAFKRARKEVPSGNGNAYWEKIAARVPGQDAAACKRVAESMLFEAAVGSKSNYFGGYVETIETQDYVDPEADIMFKINKFFGRGKK 654
T M F G K +++RP AG T KG KKT + + S PA R + KA AI + GVF+P Q+E F AR VPSG N YW++IA +VPGQ+A CK++A +LFE A G+K N+FGGYVETIE +DYVD +AD+M K+ F GKK
Sbjct: 44 TQMVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVER-RRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 202
BLAST of mRNA_L-elsbetiae_contig5507.13781.1 vs. uniprot
Match:
A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)
HSP 1 Score: 123 bits (309), Expect = 3.140e-29
Identity = 72/150 (48.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query: 187 MFFDFGSKKEEKESNARPVAGGTVKGGKKTKIVQEVS---PAQLRAQEKAAAIRERSRMAAKKTEGVFTPPQFEAFKRARKEVPSGNGNAYWEKIAARVPGQDAAACKRVAESMLFEAAVGSKSNYFGGYVETIETQDYVDPEADIMFKI 627
M F G K +++RP AG T KG KKT + + S PA R + KA AI + GVF+P Q+E F AR VPSG N YW++IA +VPGQ+A CK++A +LFE A G+K N+FGGYVETIE +DYVD +AD+M K+
Sbjct: 1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVER-RRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKL 148
BLAST of mRNA_L-elsbetiae_contig5507.13781.1 vs. uniprot
Match:
A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)
HSP 1 Score: 75.1 bits (183), Expect = 1.560e-11
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 376 VFTPPQFEAFKRARKEVPSGNGNAYWEKIAARV-PGQDAAACKRVAESMLFEAAVGSKSNYFGGYV----ETIETQDYVDPEADIMFKINKFFGR--GKKEEAE 666
VFT Q F +ARKE+PSG+G+AYW+K+A RV G A CKR+A++ LF+ A G+ SN+F +V E +E+ + AD M ++ F+G G K+E E
Sbjct: 91 VFTDKQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVESGYVDETAADPMTQMKNFWGGMLGMKKEVE 194
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5507.13781.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 2.83e-91 / Id = 75.35 Expect = 1.62e-31 / Id = 47.83 Expect = 3.14e-29 / Id = 48.00 Expect = 1.56e-11 / Id = 43.27 Sequence D8LSK3_ECTSI A0A835YZY5_9STRA A0A835YSA5_9STRA A0A7S2X777_9EUKA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 295.8
Seed ortholog evalue 1.6e-77
Seed eggNOG ortholog 2880.D8LSK3
Hectar predicted targeting category signal peptide
EggNOG OGs 2D5NM@1,2SZ3Q@2759
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-09_001950.1
Exons 4
Model size 1593
Cds size 651
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816579.236401-UTR-L-elsbetiae_contig5507:413..1337 1622816579.236401-UTR-L-elsbetiae_contig5507:413..1337 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5507 414..1337 -
1691683660.9022772-UTR-L-elsbetiae_contig5507:413..1337 1691683660.9022772-UTR-L-elsbetiae_contig5507:413..1337 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5507 414..1337 -
1622816579.3079581-UTR-L-elsbetiae_contig5507:3694..3712 1622816579.3079581-UTR-L-elsbetiae_contig5507:3694..3712 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5507 3695..3712 -
1691683660.9540071-UTR-L-elsbetiae_contig5507:3694..3712 1691683660.9540071-UTR-L-elsbetiae_contig5507:3694..3712 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5507 3695..3712 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816579.2509277-CDS-L-elsbetiae_contig5507:1337..1613 1622816579.2509277-CDS-L-elsbetiae_contig5507:1337..1613 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 1338..1613 -
1691683660.911996-CDS-L-elsbetiae_contig5507:1337..1613 1691683660.911996-CDS-L-elsbetiae_contig5507:1337..1613 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 1338..1613 -
1622816579.266196-CDS-L-elsbetiae_contig5507:2247..2367 1622816579.266196-CDS-L-elsbetiae_contig5507:2247..2367 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 2248..2367 -
1691683660.9234257-CDS-L-elsbetiae_contig5507:2247..2367 1691683660.9234257-CDS-L-elsbetiae_contig5507:2247..2367 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 2248..2367 -
1622816579.2793276-CDS-L-elsbetiae_contig5507:2738..2932 1622816579.2793276-CDS-L-elsbetiae_contig5507:2738..2932 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 2739..2932 -
1691683660.932023-CDS-L-elsbetiae_contig5507:2738..2932 1691683660.932023-CDS-L-elsbetiae_contig5507:2738..2932 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 2739..2932 -
1622816579.2934802-CDS-L-elsbetiae_contig5507:3633..3694 1622816579.2934802-CDS-L-elsbetiae_contig5507:3633..3694 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 3634..3694 -
1691683660.9445345-CDS-L-elsbetiae_contig5507:3633..3694 1691683660.9445345-CDS-L-elsbetiae_contig5507:3633..3694 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5507 3634..3694 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5507.13781.1
>prot_L-elsbetiae_contig5507.13781.1 ID=prot_L-elsbetiae_contig5507.13781.1|Name=mRNA_L-elsbetiae_contig5507.13781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MQVTCVAVICALLVATTSVEGFGLSAQRSSFHAHRAMASPSARAPRATGR RSSGTAMFFDFGSKKEEKESNARPVAGGTVKGGKKTKIVQEVSPAQLRAQ EKAAAIRERSRMAAKKTEGVFTPPQFEAFKRARKEVPSGNGNAYWEKIAA RVPGQDAAACKRVAESMLFEAAVGSKSNYFGGYVETIETQDYVDPEADIM FKINKFFGRGKKEEAE* back to top mRNA from alignment at L-elsbetiae_contig5507:414..3712-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5507.13781.1 ID=mRNA_L-elsbetiae_contig5507.13781.1|Name=mRNA_L-elsbetiae_contig5507.13781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3299bp|location=Sequence derived from alignment at L-elsbetiae_contig5507:414..3712- (Laminarionema elsbetiae ELsaHSoW15)TGCAAAGAAAGATCAACC ATGCAAGTCACCTGTGTTGCCGTGATATGTGC
TCTTCTGGTGGCGACCACGTCTGTGGAAG GTGACGTTGGTGCTATCAAAG
TCGTTTGGTCTCCGCGTAAACTTCGAACACAGCTGCAGAGAGTCACACCG
CAGCAGCAACAGTAGTAGTGTTTTATTCGCCTCTCAGCTCTACTTGCCTA
CTGAAAATGGCTGTGATTTGCTGTTTGCTTTGGGGAGTGCTATGCCTTCG
GTTAGACGTGTGTGATGGCGTCGGTTGAAATGTGTGTGTTGGATCGTGCT
TTTACGACAGATAGTAGACTATCGTGTTGCGTGTGTGAAAGGAGGACCTA
CGAACAGATGACACTCTCAGCTCGGAGGAAATTGCTTAAAACTTGTTACA
CATATGTACATCAATAGCGTGGCAAGGGCGGCAGAAGCGAATGGCGGATT
CCATTCTGCTGTCGACCACCCCTCAACCGCATAAACGGCATCCGTATCCA
CAGACTAGTCTAACTCCGCACTGGAAAGTGGACGAATGTGAGCAGCACAT
TATATTTGTGGGTTAGACATGCCGGAGACTGCTGTGTGTGCACCACGCAT
GTAGTCCGTGGCAAATCGCGCTTCTTTCTTAGTTGTACATTTGATATCGG
GGCAACTGCAGCAGGGTTGGCATCATTGGCTCCACGCAAGGAAACGGCTC
CTGTGTGGAACCGATTGTTTTGTCAGGTTTGGGAGGATTTGTTCCGACCC
TGTCCACCACAATCCCTTACCATCAATCAGGTTTTGGGCTGAGCGCACAA
CGATCAAGCTTTCATGCCCACCGGGCGATGGCATCACCATCAGCTCGCGC
GCCGCGAGCGACTGGGCGACGAAGCTCAGGCACTGCAATGTTTTTTGACT
TCGGAAGCAAAAAGGAAGAGAAGGAATCCAACGCAAGACCGGTAGCTGGC
GGGACTGTGAAGGGTGGAAAGAAG GTGCGGCTCCTCTGTTGTGAAGCTGG
AACGATGTAGGATGTAGGCCTCGGTGCTGCTTTCGTGCACATGAACCGTC
GGATTTCGAGCTTGGATTTTGTATGCATTGTGCCTAGAATAGTGTAAAGT
GCACGGGTGGCTGCGAACGCATGTTTGATAGTCAATTCGCAAGAGCGTTT
CATTAAATCAACCAAAAGAGGACAAACACGGAGCCCCAGGAAAGCGGGAG
CTTAAAAAGATACACGACACTTTCGTTTCACGCCACAACTTTGCATAACT
TCTCTGTCCGCTGAGCTGCCACTGTTGATTATGTTTCCTGTCGCACATTT
TTTCTGTCTGATTTTTGGCGCTGTGGTTTTGATATCGTCCGCCAGACCAA
GATAGTGCAGGAGGTTAGTCCAGCGCAGCTGCGAGCACAGGAAAAGGCCG
CTGCGATTAGAGAGCGGAGTCGAATGGCCGCCAAGAAGACCGAGGGAGTC
TTCACACCACCCCAG GTCAGTCAGTCGGGCACCTCTCGTACCAGAATCCC
ATTTCAATTTTCACGAGGACAATTACGTGCTTTATAACGACTGGAGATAC
TGCGAGACGTGTCGCATTTGGCGTGCCGTCTACCACCAACAGATAAGAGC
TGCGCAGATCACGTACTGATGAACTACGAGGAGAGAGAGAGAGAGAGGCG
GGAGTAGGTTTGTGTGCGCGCAATAGTACGCCGCCCATCGTTTGGCTTCT
TCTGCAACCTTGCAATCTTTTCCTGGCCTATCATTGCCGCGGCAGAGTGT
CGGGCATCCACGGCGGTTGAATTATCAGCAAGCGGGGAGTGGAGCGCCAA
AATCCAAAACAGCGCTAGAAAACGCTTGCGCCGGTACCCCGCGCGCCAAA
ACGGAAACGGAATAATGCTACCCCATTTCTTCATAGCAATTCCATGCCAG
CCCCCCTGTGTCGTTTTTCGGAAGATCCAGTCTGCGCCTTTGTCCAACGC
ACTCTTGCCTGGTGCGCATGTACTACTACTTCACGAGAAACCGTCACAAC
ACGGAAGAGCAAAGGTCATGTTTTCTGTCTTGCCGCGTATTTACAACTCT
CTTTTTGTTCGATTTCGCGCGTTTTTTACTAAACTAACGCTCAAAACAGT
TCGAGGCCTTCAAGAGGGCACGGAAAGAGGTACCTTCCGGCAACGGAAAC
GCTTACTGGGAGAAGATTGCGGCACGGGTGCCCGGACAGGACGCGGCGGC
CTGCAAGCGGGTGGCGGAGAGCATGCTGTTCGAGGCCGCGGTTGGCTCCA
AGAGCAACTACTTCGGCGGCTACGTCGAGACGATTGAGACCCAAGACTAC
GTGGACCCAGAGGCCGACATCATGTTCAAGATCAACAAGTTCTTCGGCCG
CGGGAAGAAGGAGGAGGCAGAGTAG TTCGGAGGTGGCCAAAAGGGGCCAC
GTGGCTGGTGTGTGTGAGCCTATTGAGCCAGCTGGCCTCTTGTTTGTCAG
GAGTATATTGTACTACGTATGTCTCGTATTTTTTGCGAGAGGCTTTTCAG
CACACTCCCCAGCTCACATAGTCTGGATGGACGAAGTCAGGTGTCCCGAA
AAGGGCGCGGAGGTGAGAATTTTTGGGAGCAATTTGTGATACAATACAGC
ACACAACGCTTTTCCGTTGGCGAATACACCGCCATGAGCTCTCGCGAGTC
TCAGTCTCGAACAACGTTCGTGGCGTCCGAGGCAGTTTGGTTGAGGGGGG
AAACAGCAGTCGGCTGATGGGAGTGCAGGCAACCGTCCTTGTTCTGTATC
GAAGTGTTTCGATGCGAATGGAGGGGGTTGGCAAGTTGTAGTTCGTCAGG
CTGATGGCTTGAACGGACGTCTTGGTGTTTGTTTGATTTTAAGGACATTG
TTGAATTGCGTGAGGCTTTGTTTGGTTTCGGGACAAAACGATGGCTCCGG
AGATGCGTTTCTTTACTGCTCTGTATCAGCGATGCCGCTTTTACTTGAAT
CCGTGATACACACAGCGAAATGCATGGTATCTTCGATGCAACAACAACTA
AACGTGTGTCGCTGACTGCGGTCGAATCTGGGTGTAAATATGTAGGGCTT
GCGGGAAAGGAATAGCTGTTGAAGTCTGAAAAAGGGAACTTATGTTTGGC
GGTTACCGTTGAATGGAATTGAGCCGAGGGGTCCCTGCGTTGGTGGCGAC
GACTTTGTGTAGCCATCGTTGATATGACCATGCTCCAAAAGGGAGCACGG
CAGGAGACGCGGAAGACAAACGTTGGCTTCTTTTACGGCAGGGACTCTCC
CTGGTTGTTTCGCTTGAAACTCAAGTCAAACCTGTCGTCTTTTGTCACC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5507:414..3712-
>mRNA_L-elsbetiae_contig5507.13781.1 ID=mRNA_L-elsbetiae_contig5507.13781.1|Name=mRNA_L-elsbetiae_contig5507.13781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig5507:414..3712- (Laminarionema elsbetiae ELsaHSoW15) ATGCAAGTCACCTGTGTTGCCGTGATATGTGCTCTTCTGGTGGCGACCAC GTCTGTGGAAGATGCAAGTCACCTGTGTTGCCGTGATATGTGCTCTTCTG GTGGCGACCACGTCTGTGGAAGGTTTTGGGCTGAGCGCACAACGATCAAG CTTTCATGCCCACCGGGCGATGGCATCACCATCAGCTCGCGCGCCGCGAG CGACTGGGCGACGAAGCTCAGGCACTGCAATGTTTTTTGACTTCGGAAGC AAAAAGGAAGAGAAGGAATCCAACGCAAGACCGGTAGCTGGCGGGACTGT GAAGGGTGGAAAGAAGGTTTTGGGCTGAGCGCACAACGATCAAGCTTTCA TGCCCACCGGGCGATGGCATCACCATCAGCTCGCGCGCCGCGAGCGACTG GGCGACGAAGCTCAGGCACTGCAATGTTTTTTGACTTCGGAAGCAAAAAG GAAGAGAAGGAATCCAACGCAAGACCGGTAGCTGGCGGGACTGTGAAGGG TGGAAAGAAGACCAAGATAGTGCAGGAGGTTAGTCCAGCGCAGCTGCGAG CACAGGAAAAGGCCGCTGCGATTAGAGAGCGGAGTCGAATGGCCGCCAAG AAGACCGAGGGAGTCTTCACACCACCCCAGACCAAGATAGTGCAGGAGGT TAGTCCAGCGCAGCTGCGAGCACAGGAAAAGGCCGCTGCGATTAGAGAGC GGAGTCGAATGGCCGCCAAGAAGACCGAGGGAGTCTTCACACCACCCCAG TTCGAGGCCTTCAAGAGGGCACGGAAAGAGGTACCTTCCGGCAACGGAAA CGCTTACTGGGAGAAGATTGCGGCACGGGTGCCCGGACAGGACGCGGCGG CCTGCAAGCGGGTGGCGGAGAGCATGCTGTTCGAGGCCGCGGTTGGCTCC AAGAGCAACTACTTCGGCGGCTACGTCGAGACGATTGAGACCCAAGACTA CGTGGACCCAGAGGCCGACATCATGTTCAAGATCAACAAGTTCTTCGGCC GCGGGAAGAAGGAGGAGGCAGAGTAGTTCGAGGCCTTCAAGAGGGCACGG AAAGAGGTACCTTCCGGCAACGGAAACGCTTACTGGGAGAAGATTGCGGC ACGGGTGCCCGGACAGGACGCGGCGGCCTGCAAGCGGGTGGCGGAGAGCA TGCTGTTCGAGGCCGCGGTTGGCTCCAAGAGCAACTACTTCGGCGGCTAC GTCGAGACGATTGAGACCCAAGACTACGTGGACCCAGAGGCCGACATCAT GTTCAAGATCAACAAGTTCTTCGGCCGCGGGAAGAAGGAGGAGGCAGAGT AG back to top