mRNA_L-elsbetiae_contig5477.13742.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5477.13742.1
Unique NamemRNA_L-elsbetiae_contig5477.13742.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 8.720e-66
Identity = 99/110 (90.00%), Postives = 106/110 (96.36%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIAKKVG 330
            GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTL+PDLRSIPAYVSSR+YGCAYC+SHTAVMGTVWKGSGLTL+KNA+AM  +P+P VFS KELAAINIAKKVG
Sbjct:   66 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLTPDLRSIPAYVSSRTYGCAYCASHTAVMGTVWKGSGLTLDKNAMAMDEEPNPDVFSPKELAAINIAKKVG 175          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.490e-32
Identity = 54/90 (60.00%), Postives = 73/90 (81.11%), Query Frame = 1
Query:   61 NVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIAKKVG 330
            +V+VPNL++IPFCDFG+GT+   LR + AYV SR YGC YC++H A +GT+W+G  + L KN  AMAP+PDP+VF+ KEL+AINI+KK+G
Sbjct:    2 SVLVPNLWNIPFCDFGIGTIDGGLRGLVAYVISREYGCGYCAAHCAALGTIWRGDSVFLAKNIKAMAPEPDPEVFTPKELSAINISKKLG 91          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A0C2D7D5_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2D7D5_9DELT)

HSP 1 Score: 124 bits (312), Expect = 1.640e-31
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIA 318
            GV P    YLE+WPP F TY+V+VP+L DIP CD G G +SPDLRS+  YV+SRSY CAYCS+H A MGT++KG G +L +NA AMAP  D   FS  +LAAI  A
Sbjct:   47 GVVPHAMSYLEIWPPAFTTYSVLVPSLLDIPRCDLGRG-ISPDLRSLVVYVASRSYDCAYCSAHAAGMGTIFKGPGGSLLRNAEAMAPL-DSSNFSLADLAAIEYA 150          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A2S9YSM1_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YSM1_9DELT)

HSP 1 Score: 122 bits (305), Expect = 1.650e-30
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIA 318
            GV P    Y E+WPP F TY+V+VP+L DIP CD G G +SPDLRS+  YV+SRSY CAYCS+H A MGT++KG G +L +NA AMAP    K F   +LAAI+ A
Sbjct:   47 GVVPHAMGYFEIWPPAFTTYSVLVPSLLDIPRCDLGRG-ISPDLRSLVVYVASRSYDCAYCSAHAAGMGTIFKGPGGSLLRNAEAMAPLDSSK-FEPSDLAAIDYA 150          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A6G658_9DELT (Probable fusion protein n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6G658_9DELT)

HSP 1 Score: 119 bits (299), Expect = 7.570e-30
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIA 318
            GV PR   Y E+WPP F TY+V+VP   DIP CD G G +SPDLRS+ AYVSSRS+GC YCS+H A +GT+++G+G +LE+N  AM PQ    +FS  + AAI+ A
Sbjct:    7 GVVPRVMSYFEIWPPAFTTYSVLVPAFMDIPRCDLGRG-ISPDLRSLVAYVSSRSFGCGYCSAHAAGIGTMFRGAGGSLERNREAMNPQAC-NLFSPADQAAIDFA 110          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A0C2CZ51_9DELT (Putative fusion protein n=2 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CZ51_9DELT)

HSP 1 Score: 116 bits (291), Expect = 1.640e-28
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIA 318
            GV P    Y E+WPP F TY+V+VP+L DIP CD G G +SPDLRS+  Y++SRSYGC+YCS+H+A +GTV++G G +LE+N  A+  +    +F   ++AAIN A
Sbjct:   46 GVVPHAMSYFEIWPPAFTTYSVLVPSLLDIPRCDLGRG-ISPDLRSLVLYIASRSYGCSYCSAHSAGVGTVFRGPGGSLERNKQALDAKSCD-LFGAADIAAINYA 149          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A850G4F7_9DELT (Uncharacterized protein n=1 Tax=Pseudenhygromyxa sp. WMMC2535 TaxID=2712867 RepID=A0A850G4F7_9DELT)

HSP 1 Score: 114 bits (284), Expect = 1.530e-27
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIA 318
            GV P    Y E+WPP   TY+V+VP + DIP CD G G + P LRS+  YV+SRS+GC+YC++H+A +GTV++GSG  L +NA AM+P+   K+FS  +LAAI+ A
Sbjct:   40 GVVPHAMSYFEIWPPALTTYSVLVPAMLDIPRCDMGRG-IPPALRSLVLYVASRSHGCSYCAAHSASVGTVFRGSGGNLARNAQAMSPEAC-KLFSPADLAAIDYA 143          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A7V8WSM4_9CHLR (CMD domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WSM4_9CHLR)

HSP 1 Score: 95.1 bits (235), Expect = 4.150e-21
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIAK 321
            GV P CDQYLE+W P F TYN+M+PN F++PF  FG G    D+  +  YV+SR+ GC YCS+HT          G + EK A A+     P  F+  ELA + +A+
Sbjct:  101 GVVPNCDQYLEIWEPAFRTYNIMLPNFFNLPFSIFGFGEAPADVVGMGMYVASRTAGCPYCSAHTCSFAL---RRGASPEKMAQALVGGSAP--FTPGELATVAVAR 202          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A1G0KAQ9_9GAMM (CMD domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0KAQ9_9GAMM)

HSP 1 Score: 85.5 bits (210), Expect = 2.330e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIA 318
            GV P CD YLE+WPP F TYNVMVPNL ++PF  +G+G     +  +  YV+SR  GC YCS+HT          G T+E+ + A+  + +  V  R   AA+ +A
Sbjct:   32 GVVPNCDPYLEIWPPAFRTYNVMVPNLLNLPFLVWGLGAPRSTV-GLAMYVASRVSGCPYCSAHTCSFAL---RRGATVEQVSSALDEERNLTVADR---AAVRVA 130          
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Match: A0A7S1TD96_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD96_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 1.270e-16
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAYVSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKELAAINIAKKVG 330
            GV PR   ++ + PP  +  ++++PNL ++PF DFG+G L P+LRSI  + +++S+GC  CS H    GTV KGS L +EK   A   +      S +E+AA   ++ +G
Sbjct:   70 GVQPRLSCWMAIHPPSLDVRDLLLPNLLNMPFSDFGLG-LDPELRSIIMHTTAQSFGCPACSGHGLCFGTVLKGSELYMEKTRKAFDYELHSDDLSPREIAAAAFSRALG 178          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5477.13742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWC3_9PHAE8.720e-6690.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMN7_ECTSI3.490e-3260.00Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0C2D7D5_9DELT1.640e-3159.43Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A0A2S9YSM1_9DELT1.650e-3057.55Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A6G658_9DELT7.570e-3055.66Probable fusion protein n=1 Tax=Plesiocystis pacif... [more]
A0A0C2CZ51_9DELT1.640e-2851.89Putative fusion protein n=2 Tax=Enhygromyxa salina... [more]
A0A850G4F7_9DELT1.530e-2751.89Uncharacterized protein n=1 Tax=Pseudenhygromyxa s... [more]
A0A7V8WSM4_9CHLR4.150e-2143.93CMD domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A1G0KAQ9_9GAMM2.330e-1742.45CMD domain-containing protein n=1 Tax=Gammaproteob... [more]
A0A7S1TD96_9RHOD1.270e-1638.18Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5477contigL-elsbetiae_contig5477:11525..12571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score123.2
Seed ortholog evalue7.3e-26
Seed eggNOG ortholog391625.PPSIR1_29453
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydroperoxide reductase activity
EggNOG OGsCOG2128@1,COG2128@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.8174706-CDS-L-elsbetiae_contig5477:11524..116851622816574.8174706-CDS-L-elsbetiae_contig5477:11524..11685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 11525..11685 +
1691683657.8427508-CDS-L-elsbetiae_contig5477:11524..116851691683657.8427508-CDS-L-elsbetiae_contig5477:11524..11685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 11525..11685 +
1622816574.8284879-CDS-L-elsbetiae_contig5477:12402..125711622816574.8284879-CDS-L-elsbetiae_contig5477:12402..12571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 12403..12571 +
1691683657.854349-CDS-L-elsbetiae_contig5477:12402..125711691683657.854349-CDS-L-elsbetiae_contig5477:12402..12571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5477 12403..12571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5477.13742.1prot_L-elsbetiae_contig5477.13742.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5477 11525..12571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5477.13742.1

>prot_L-elsbetiae_contig5477.13742.1 ID=prot_L-elsbetiae_contig5477.13742.1|Name=mRNA_L-elsbetiae_contig5477.13742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
GVTPRCDQYLELWPPGFETYNVMVPNLFDIPFCDFGVGTLSPDLRSIPAY
VSSRSYGCAYCSSHTAVMGTVWKGSGLTLEKNALAMAPQPDPKVFSRKEL
AAINIAKKVG
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mRNA from alignment at L-elsbetiae_contig5477:11525..12571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5477.13742.1 ID=mRNA_L-elsbetiae_contig5477.13742.1|Name=mRNA_L-elsbetiae_contig5477.13742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1047bp|location=Sequence derived from alignment at L-elsbetiae_contig5477:11525..12571+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCACGCCTCGCTGTGACCAGTACCTCGAGCTCTGGCCGCCCGGCTT CGAGACGTACAACGTCATGGTGCCCAACCTGTTCGACATCCCGTTCTGCG ACTTCGGTGTCGGCACCCTATCGCCCGACCTCAGAAGCATCCCGGCTTAC GTCTCCAGCAGGTGAGAGATGGAGGCAATGGACCACGATGTATCTTAGGT GTTTGGTTCCGGCCGGCTAGTGGTAAAAGATACATCTCACAAGATGCTCG ACTTGGAGGAGACTTTGGCAAGCTCGAGTCTAAAACGAAATACCCGTGAC GACACTCACCTAATAATATAGCCCCCCCCCCGACCGACTGTCTGTGTGGT TTTGGGCCGTGTGGACGATGTATGCGGACACCAGACGCAAATTTCAGATG TACGGATGAGCATGTCTACGAGGAGGCTAAAAAATGCTGGCCTCTTTGCC TAGTTCCCACAGCCGAAACTGCGGTGGCACTGTTGCCTTCCGCCGACCCC CTCGCGAGAAGAACCACCACCACCCCCGCCTTCTCTCTCTACCCTCTGTT ATGATTGTGATGCTTCACGTCCATATCGTGCTTATTTCTAGCAGCAGCTC CTAAACGCTAGATTGTTGTGCCGATTGTGGGTCCTAGTCTATTGAAAGCT CCCGGCGTTTCTCGACCATTCAGGTCACGACCTACGGGCGACTAGATCCC TTTTTTTTACTGCTTGATGGAATCTGACCTACGGGCGACTAGATTCCTCT TCACTGATTTTTTGATGGAATCCGACCTACGGGCGACTAGATTCTCATTC ACTCTGCTTTTGATAGAACCCACCGTCCGCGTCCCCTTTCCCGCTCCCCC CGCAACTGTGAAAACCATTATTTTTCAGGAGCTACGGGTGCGCCTACTGC TCGTCGCACACGGCCGTGATGGGCACTGTGTGGAAAGGGAGCGGCCTGAC CCTGGAGAAAAACGCTCTTGCCATGGCCCCCCAGCCCGACCCAAAGGTCT TCAGCAGGAAGGAGCTCGCGGCGATCAACATCGCCAAGAAGGTTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5477:11525..12571+

>mRNA_L-elsbetiae_contig5477.13742.1 ID=mRNA_L-elsbetiae_contig5477.13742.1|Name=mRNA_L-elsbetiae_contig5477.13742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5477:11525..12571+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCACGCCTCGCTGTGACCAGTACCTCGAGCTCTGGCCGCCCGGCTT
CGAGACGTACAACGTCATGGTGCCCAACCTGTTCGACATCCCGTTCTGCG
ACTTCGGTGTCGGCACCCTATCGCCCGACCTCAGAAGCATCCCGGCTTAC
GTCTCCAGCAGGGCGTCACGCCTCGCTGTGACCAGTACCTCGAGCTCTGG
CCGCCCGGCTTCGAGACGTACAACGTCATGGTGCCCAACCTGTTCGACAT
CCCGTTCTGCGACTTCGGTGTCGGCACCCTATCGCCCGACCTCAGAAGCA
TCCCGGCTTACGTCTCCAGCAGGAGCTACGGGTGCGCCTACTGCTCGTCG
CACACGGCCGTGATGGGCACTGTGTGGAAAGGGAGCGGCCTGACCCTGGA
GAAAAACGCTCTTGCCATGGCCCCCCAGCCCGACCCAAAGGTCTTCAGCA
GGAAGGAGCTCGCGGCGATCAACATCGCCAAGAAGGTTGGTGAGCTACGG
GTGCGCCTACTGCTCGTCGCACACGGCCGTGATGGGCACTGTGTGGAAAG
GGAGCGGCCTGACCCTGGAGAAAAACGCTCTTGCCATGGCCCCCCAGCCC
GACCCAAAGGTCTTCAGCAGGAAGGAGCTCGCGGCGATCAACATCGCCAA
GAAGGTTGGT
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