Homology
BLAST of mRNA_L-elsbetiae_contig5450.13704.1 vs. uniprot
Match:
A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)
HSP 1 Score: 174 bits (442), Expect = 6.290e-44
Identity = 158/318 (49.69%), Postives = 170/318 (53.46%), Query Frame = 3
Query: 246 LRRPRG-AADDEVKVNLGDAALRGLFSRWVDQHLRLHGDGXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------GRAIGDDTMLWVTEEEVGG--GIQRTLLQKRVGEFDGREGQDAIPHWAMSCVLHGDFRPKEQPKVAFFLAPWIPP---GRSSLPLPSTPLRQQQGKXXXXXXXXXXXXXXXXDGRSASLSVTRGSGAAAVAGSKAGSA------AGAGGVPPSQVSQRFTAPAQMLVSKV 896
+R P+G + DEVKVNLGDAALRGLFSRWVDQHLRLH DGXXXXXXXXXXXXXXXXXXX GRAIGDDTMLWVTE ++GG GIQRTLLQKRVGEFDGREGQDAIP+W M+CVLHG+F KEQ K+AFFLAPWIPP G L LPSTP RQ QGK XXXXXXXXX + ASL GAGGVP +Q+SQRFTAP QMLVSKV
Sbjct: 835 VRAPKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDYESRSASTRSAQSSQASPGPKDGSSGGAYYPRGSGESSGGAGGVRGSHVLDFDSVGGGGAGRAIGDDTMLWVTEMDLGGHGGIQRTLLQKRVGEFDGREGQDAIPNWVMACVLHGEFHTKEQDKMAFFLAPWIPPERGGGGGLSLPSTPHRQPQGKRGXXXXXXXXXDAR----KPASLXXXXXXXXXXXXXXXXXXXXXXXXXVGAGGVPSNQMSQRFTAPVQMLVSKV 1148
BLAST of mRNA_L-elsbetiae_contig5450.13704.1 vs. uniprot
Match:
D8LJZ3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ3_ECTSI)
HSP 1 Score: 169 bits (427), Expect = 2.350e-42
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 1
Query: 1 VVLERRHVLTEDDARPQPNVALWDVTKARQIEAYPAGTVLEDKERSLLEVIAVRPWFTVDTHLGTPLVTLSESTVFDGELYAFDARGERQT 273
V+ RRHVLTEDDARP PNVALWDVTKARQ+EAYP GTVLEDKERSLLE+IAVRPWFTVDTHLGTPLV+LSES VFDGELYA DARGERQT
Sbjct: 490 VLNNRRHVLTEDDARPLPNVALWDVTKARQVEAYPPGTVLEDKERSLLEIIAVRPWFTVDTHLGTPLVSLSESNVFDGELYAVDARGERQT 580
BLAST of mRNA_L-elsbetiae_contig5450.13704.1 vs. uniprot
Match:
A0A6H5JF83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF83_9PHAE)
HSP 1 Score: 66.2 bits (160), Expect = 4.460e-10
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = -2
Query: 917 CGSTTRSPHSTSTKSSGVSREGQ--ATPAPSPPSAXXXXXXXXXXXXXXXPSGCTTVLSKCWRRSS 1108
CGS+TRSP STSTKSSGVSREG+ PA SPP XX XXXXX PSGCTTVLS+CW RSS
Sbjct: 23 CGSSTRSPQSTSTKSSGVSREGRIITPPAASPPPXXXLPLPPVVXXXXXPPSGCTTVLSRCWWRSS 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5450.13704.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 6.29e-44 / Id = 49.69 Expect = 2.35e-42 / Id = 89.01 Expect = 4.46e-10 / Id = 69.70 Sequence A0A6H5JCV2_9PHAE D8LJZ3_ECTSI A0A6H5JF83_9PHAE
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description Protein of unknown function DUF3337
Ec32 ortholog Ec-06_007550.1
Exons 5
Model size 1283
Cds size 768
Stop 1
Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816571.405107-UTR-L-elsbetiae_contig5450:9750..9822 1622816571.405107-UTR-L-elsbetiae_contig5450:9750..9822 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 9751..9822 -
1691683655.4497614-UTR-L-elsbetiae_contig5450:9750..9822 1691683655.4497614-UTR-L-elsbetiae_contig5450:9750..9822 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 9751..9822 -
1622816571.4545941-UTR-L-elsbetiae_contig5450:11538..11579 1622816571.4545941-UTR-L-elsbetiae_contig5450:11538..11579 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 11539..11579 -
1691683655.505857-UTR-L-elsbetiae_contig5450:11538..11579 1691683655.505857-UTR-L-elsbetiae_contig5450:11538..11579 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 11539..11579 -
1622816571.4691267-UTR-L-elsbetiae_contig5450:11831..11961 1622816571.4691267-UTR-L-elsbetiae_contig5450:11831..11961 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 11832..11961 -
1691683655.5150294-UTR-L-elsbetiae_contig5450:11831..11961 1691683655.5150294-UTR-L-elsbetiae_contig5450:11831..11961 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 11832..11961 -
1622816571.4813442-UTR-L-elsbetiae_contig5450:12232..12504 1622816571.4813442-UTR-L-elsbetiae_contig5450:12232..12504 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 12233..12504 -
1691683655.5268073-UTR-L-elsbetiae_contig5450:12232..12504 1691683655.5268073-UTR-L-elsbetiae_contig5450:12232..12504 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5450 12233..12504 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816571.4191313-CDS-L-elsbetiae_contig5450:9822..9914 1622816571.4191313-CDS-L-elsbetiae_contig5450:9822..9914 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5450 9823..9914 -
1691683655.4623435-CDS-L-elsbetiae_contig5450:9822..9914 1691683655.4623435-CDS-L-elsbetiae_contig5450:9822..9914 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5450 9823..9914 -
1622816571.4303265-CDS-L-elsbetiae_contig5450:10569..10795 1622816571.4303265-CDS-L-elsbetiae_contig5450:10569..10795 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5450 10570..10795 -
1691683655.472881-CDS-L-elsbetiae_contig5450:10569..10795 1691683655.472881-CDS-L-elsbetiae_contig5450:10569..10795 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5450 10570..10795 -
1622816571.442871-CDS-L-elsbetiae_contig5450:11088..11538 1622816571.442871-CDS-L-elsbetiae_contig5450:11088..11538 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5450 11089..11538 -
1691683655.4897673-CDS-L-elsbetiae_contig5450:11088..11538 1691683655.4897673-CDS-L-elsbetiae_contig5450:11088..11538 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5450 11089..11538 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5450.13704.1
>prot_L-elsbetiae_contig5450.13704.1 ID=prot_L-elsbetiae_contig5450.13704.1|Name=mRNA_L-elsbetiae_contig5450.13704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
MLWVTEEEVGGGIQRTLLQKRVGEFDGREGQDAIPHWAMSCVLHGDFRPK EQPKVAFFLAPWIPPGRSSLPLPSTPLRQQQGKRGGGGGGGAAAAAGGGD GRSASLSVTRGSGAAAVAGSKAGSAAGAGGVPPSQVSQRFTAPAQMLVSK VMAYVLSHDDLRQHLESTVVHPEGRGGSEAGCGAGGTGAADGGEGAGVAC PSRETPEDLVEVLCGDRVVEPHLYIGAIQQYIWNPKESGTLFLHYRSRRR PTGGR* back to top mRNA from alignment at L-elsbetiae_contig5450:9751..12504-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5450.13704.1 ID=mRNA_L-elsbetiae_contig5450.13704.1|Name=mRNA_L-elsbetiae_contig5450.13704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2754bp|location=Sequence derived from alignment at L-elsbetiae_contig5450:9751..12504- (Laminarionema elsbetiae ELsaHSoW15)GTCGTTCTCGAAAGGCGCCACGTGCTCACGGAGGACGATGCCCGACCGCA
GCCGAACGTGGCCCTGTGGGATGTGACCAAGGCTCGGCAGATCGAGGCCT
ACCCCGCCGGGACCGTCCTGGAGGACAAGGAGCGGTCCCTGCTTGAGGTC
ATCGCCGTGAGGCCGTGGTTCACGGTAGACACGCATCTGGGCACGCCGCT
GGTGACCCTGTCGGAGAGCACCGTGTTTGACGGCGAGCTGTACGCCTTCG
ACGCCCGCGGGGAGCGGCAGAC GTTCCTCGCCTCGCCACCGCCGCCGCCG
CCGCCGCCGGCCGGCATGCCGACGGAGCCGGTGCGGGACACCGAGGCCTC
ACCGCCTGCCGCACCCTCGTCGTCGACGACGGCCGCTTTGTCTTCGACGC
GGGAGGGAGCGGGGTTGGCGCCGGGGGAGGCGGCCGCGGCGGCGGCGGCG
ACAAAAGAGAGGGGCGAGTCCGGGGCCGGGGTTGAAGACGGGGAGGGAGC
AACGGGACCTACGCGGGCGGCGCCGAAGGGGCGCTCGGTGCAGGACGAGG
TGAAAGTGAACCTCGGCGACGCCGCCCTTCGCGGCCTGTTCTCCAGGTGG
GTCGACCAGCACCTCCGGCTGCACGGCGACGGAGGAGGCCCGCCGTCGTC
TTCCTCGGCCCCTTACTCCCGCC GTCGAGACAACGGCGGCGGGAGCACCT
ACTCCTCGGACGAGGACTCCGAGAACGACGGCGACTACGAGTCCTCGAGG
TCGGCCTCCACGAGGTCCGCGCAGAGCTCCCAGACCTCCCCGGGACCGAG
AGACGGCAGCCACAGGCGCGGCTCGGGGGAGAACGGCGGCGGTGGCGGCG
GCGGTGGCGGCGGCGGCGTTCGAGGGCGCCACGTGCTGGACGTCGAGCTG
GCCGGGGGCGGCGGCGGAGGAGGAGGAGGGGGAGGGGGGGCCGGGCGGGC
GATAGGGGACGACACC ATGCTGTGGGTAACCGAGGAGGAGGTCGGGGGAG
GCATCCAGCGGACGCTCCTCCAGAAGCGGGTGGGAGAGTTCGACGGGCGG
GAGGGGCAGGACGCCATCCCCCACTGGGCGATGTCGTGCGTGCTCCACGG
AGACTTCCGCCCCAAGGAGCAACCCAAGGTGGCGTTCTTTCTGGCCCCCT
GGATACCGCCAGGGCGGAGCAGCCTCCCGCTGCCGTCCACGCCGTTGCGG
CAGCAGCAAGGGAAGAGGGGCGGCGGGGGCGGGGGGGGGGCGGCGGCGGC
GGCGGGGGGGGGGGATGGGAGGTCTGCTTCGTTGTCGGTGACGCGAGGAA
GCGGCGCGGCGGCCGTCGCCGGGAGCAAGGCCGGGAGCGCGGCTGGGGCT
GGGGGTGTGCCTCCTAGTCAGGTGTCGCAGCGGTTCACGGCCCCGGCGCA
AATGCTCGTATCAAAG GTGTGGTATGTGGTGTGTGTGTGTGTGTGAGTGT
GAGTGCGTTTGTATGTGTGCTTGCGCGCGCGTTGCGACAAAACCAGACGA
CTCCACAAGCCTAAGTTTCCGTGTCATGCCACTATTATAGCTACCGTAGT
TTCTTCCAACGGTAAAGGTAAGCTGTGCAGGGCTCAGCCAGGTAGTTTTC
GTCCATTGTACCGCCGTGCTGTTGGCAGACTCTCCGCCTTTCACGCGCAT
TCTCGAAATACGCCGCTCTTCCTACCCCGCTCCACCCTCTCTCGTCTGGG
TCCTGAAAGGTCATGGCGTATGTCCTCTCGCACGACGACCTCCGCCAGCA
CTTGGAGAGTACGGTTGTACACCCAGAGGGAAGAGGCGGCTCTGAGGCCG
GCTGCGGCGCCGGTGGCACCGGTGCCGCGGATGGGGGGGAGGGGGCAGGT
GTGGCCTGCCCCTCTCGAGAGACGCCGGAAGACTTGGTGGAGGTGCTGTG
CGGCGACCGCGTGGTCGAACCACACCTGTATATCG GTGAGTGTACACGAA
GAGGAGGAAGAGGGGGGCTGGGTGGGCGGGGGGGGCGCGGGAGGGGGGGG
GGTGTAGTGAAGCTGTCTTTCCCGCACGCGGGTGTAGTGCGTAACACTCT
GCGTTTCTTCCTCAACCTATGAACATAGGTGTGTGTTTTCGTGTGCTTTT
GGCCTTTTTGGCAATGCGGTGTGTCTGCCAAAATCATACCGCGGATAGCA
GATAGAACCGGGCACTACTGCTGCTGTTGTCTCGAGTTTGGCCCAGGCGA
GTTCGAGCACAAGTAATTGATGGAAAACCGGCGTAAAAAAAAACACTTTT
TTTCACCGCAAACACGCGCTTACGTAACTACTACCCCCCGTGCCCGGCTT
TTTGCTCGCACGTATCCACAAGATGTAGTATTACATGGTGTCAAACCAAC
AAGCCTTTCATTTCTGAATCTAAGTACGACACGAAAGCAGGGCCGCAATA
GTTTCACCGTTGTCGTAAAGGAGTACCTACATACCTCTCTCCTGCGTTAC
CTTGCCTTACCGCGCCAGACACGTCACCCCACCCCTCTTGTTTTCGTTTC
TTTGTTGTGGCTGCGTGTAATTGGACAACGTATTATTCTTCCTCCTCCTA
TTCGATTGATTCTGCTGCTTCCATTGGTTTTCAATGGCAGGCGCCATCCA
GCAGTACATTTGGAATCCAAAGGAGTCTGGCACCCTCTTCTTACACTACC
GTTCCCGGCGGCGACCAACCGGGGGGCGGTAG CGCACGGCAAACCGCACG
CAGTTTTGTTGTCATGAGAGTGGAGGGAGGGGGGGTCGGGAGAAGAATTG
AGAC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5450:9751..12504-
>mRNA_L-elsbetiae_contig5450.13704.1 ID=mRNA_L-elsbetiae_contig5450.13704.1|Name=mRNA_L-elsbetiae_contig5450.13704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig5450:9751..12504- (Laminarionema elsbetiae ELsaHSoW15) ATGCTGTGGGTAACCGAGGAGGAGGTCGGGGGAGGCATCCAGCGGACGCT CCTCCAGAAGCGGGTGGGAGAGTTCGACGGGCGGGAGGGGCAGGACGCCA TCCCCCACTGGGCGATGTCGTGCGTGCTCCACGGAGACTTCCGCCCCAAG GAGCAACCCAAGGTGGCGTTCTTTCTGGCCCCCTGGATACCGCCAGGGCG GAGCAGCCTCCCGCTGCCGTCCACGCCGTTGCGGCAGCAGCAAGGGAAGA GGGGCGGCGGGGGCGGGGGGGGGGCGGCGGCGGCGGCGGGGGGGGGGGAT GGGAGGTCTGCTTCGTTGTCGGTGACGCGAGGAAGCGGCGCGGCGGCCGT CGCCGGGAGCAAGGCCGGGAGCGCGGCTGGGGCTGGGGGTGTGCCTCCTA GTCAGGTGTCGCAGCGGTTCACGGCCCCGGCGCAAATGCTCGTATCAAAG ATGCTGTGGGTAACCGAGGAGGAGGTCGGGGGAGGCATCCAGCGGACGCT CCTCCAGAAGCGGGTGGGAGAGTTCGACGGGCGGGAGGGGCAGGACGCCA TCCCCCACTGGGCGATGTCGTGCGTGCTCCACGGAGACTTCCGCCCCAAG GAGCAACCCAAGGTGGCGTTCTTTCTGGCCCCCTGGATACCGCCAGGGCG GAGCAGCCTCCCGCTGCCGTCCACGCCGTTGCGGCAGCAGCAAGGGAAGA GGGGCGGCGGGGGCGGGGGGGGGGCGGCGGCGGCGGCGGGGGGGGGGGAT GGGAGGTCTGCTTCGTTGTCGGTGACGCGAGGAAGCGGCGCGGCGGCCGT CGCCGGGAGCAAGGCCGGGAGCGCGGCTGGGGCTGGGGGTGTGCCTCCTA GTCAGGTGTCGCAGCGGTTCACGGCCCCGGCGCAAATGCTCGTATCAAAG GTCATGGCGTATGTCCTCTCGCACGACGACCTCCGCCAGCACTTGGAGAG TACGGTTGTACACCCAGAGGGAAGAGGCGGCTCTGAGGCCGGCTGCGGCG CCGGTGGCACCGGTGCCGCGGATGGGGGGGAGGGGGCAGGTGTGGCCTGC CCCTCTCGAGAGACGCCGGAAGACTTGGTGGAGGTGCTGTGCGGCGACCG CGTGGTCGAACCACACCTGTATATCGGTCATGGCGTATGTCCTCTCGCAC GACGACCTCCGCCAGCACTTGGAGAGTACGGTTGTACACCCAGAGGGAAG AGGCGGCTCTGAGGCCGGCTGCGGCGCCGGTGGCACCGGTGCCGCGGATG GGGGGGAGGGGGCAGGTGTGGCCTGCCCCTCTCGAGAGACGCCGGAAGAC TTGGTGGAGGTGCTGTGCGGCGACCGCGTGGTCGAACCACACCTGTATAT CGGCGCCATCCAGCAGTACATTTGGAATCCAAAGGAGTCTGGCACCCTCT TCTTACACTACCGTTCCCGGCGGCGACCAACCGGGGGGCGGTAGGCGCCA TCCAGCAGTACATTTGGAATCCAAAGGAGTCTGGCACCCTCTTCTTACAC TACCGTTCCCGGCGGCGACCAACCGGGGGGCGGTAG back to top