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Homology
BLAST of mRNA_L-elsbetiae_contig5418.13649.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI) HSP 1 Score: 134 bits (338), Expect = 1.900e-34 Identity = 74/102 (72.55%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 40 MLECVARLLPFADELEEGAHVDPRVSLLRHAAEAVLTLASCIDRDASTAGHEGPSSADAEELHRQGDKVIQFACALGFDAVDEAPDSEEQVTTLAAPAAPTR 345
M+E ARLL FADELEEGA VD RVSLLR+ EAVLTLA I+ D+S AGHEGPS ADA+EL Q DKVIQFACALGFDA DE DSEE +TT A PAA TR
Sbjct: 1 MIEYAARLLRFADELEEGADVDSRVSLLRYGVEAVLTLAGAIEGDSSRAGHEGPSRADADELRHQEDKVIQFACALGFDAADEPCDSEE-ITTSATPAAHTR 101
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 415 |
| Cds size | 414 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816566.6736934-CDS-L-elsbetiae_contig5418:2577..2628 | 1622816566.6736934-CDS-L-elsbetiae_contig5418:2577..2628 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5418 2578..2628 - |
| 1691683652.09965-CDS-L-elsbetiae_contig5418:2577..2628 | 1691683652.09965-CDS-L-elsbetiae_contig5418:2577..2628 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5418 2578..2628 - |
| 1622816566.687135-CDS-L-elsbetiae_contig5418:3092..3167 | 1622816566.687135-CDS-L-elsbetiae_contig5418:3092..3167 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5418 3093..3167 - |
| 1691683652.1089861-CDS-L-elsbetiae_contig5418:3092..3167 | 1691683652.1089861-CDS-L-elsbetiae_contig5418:3092..3167 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5418 3093..3167 - |
| 1622816566.699304-CDS-L-elsbetiae_contig5418:3665..3953 | 1622816566.699304-CDS-L-elsbetiae_contig5418:3665..3953 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5418 3666..3953 - |
| 1691683652.1255803-CDS-L-elsbetiae_contig5418:3665..3953 | 1691683652.1255803-CDS-L-elsbetiae_contig5418:3665..3953 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5418 3666..3953 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5418.13649.1 >prot_L-elsbetiae_contig5418.13649.1 ID=prot_L-elsbetiae_contig5418.13649.1|Name=mRNA_L-elsbetiae_contig5418.13649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
GSGRYHGLVSADTMLECVARLLPFADELEEGAHVDPRVSLLRHAAEAVLT
LASCIDRDASTAGHEGPSSADAEELHRQGDKVIQFACALGFDAVDEAPDS
EEQVTTLAAPAAPTRRKRKAEARRLSNKRPRRLGFEGE back to topmRNA from alignment at L-elsbetiae_contig5418:2578..3953- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5418.13649.1 ID=mRNA_L-elsbetiae_contig5418.13649.1|Name=mRNA_L-elsbetiae_contig5418.13649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1376bp|location=Sequence derived from alignment at L-elsbetiae_contig5418:2578..3953- (Laminarionema elsbetiae ELsaHSoW15)
GGTTCGGGTCGATACCACGGTCTCGTGTCTGCAGATACCATGCTCGAATG
TGTCGCTCGTTTGCTTCCGTTCGCGGACGAGCTCGAGGAGGGCGCCCATG
TGGATCCGCGCGTCTCGCTGCTCCGACACGCGGCTGAGGCTGTCCTGACG
CTCGCCAGTTGTATTGATCGAGATGCCAGCACGGCAGGGCACGAGGGCCC
GTCAAGCGCCGACGCCGAGGAGTTGCACCGCCAGGGAGACAAAGTGATTC
AGTTCGCTTGTGCCCTTGGGTTCGACGCGGTTGACGAGGCGGGTGTTCTT
GTTATCATGTTGGTATGCGGTATATGGAAATGGTCTCTTTGTCCGAGCGT
CTGGAGTGCCTTTCCTAACCTCCCCATGTCTTTTCGTTTGTGACGACGTG
CATACAAGATGCATTCGTTCGTCGCGTACGCCGGCCCTTTGCGGCGCACC
TCGAGCTTATCTCTGGGTACGCGCCCGAAATGTCATTGTCTGTGTTTCCG
ACCGACAACCTTGGCCTGACGTGGTTCGGCGTCTTCTCAGCCCCGCCCAA
AGCCTCCCCATCTCCGCTCGTAGTGTCAAGTCCTAAGCATTCGATGCCCC
ACCTCATTGTTTTCCACGTGATTTCGGCCGAAGTTGGTGTGGATGTTTAC
TACTTCGCCTCGATTTCCCGCCAAAACCACAGCGTCGGGGCTCATGTGGA
TCAAGTACACATTTCATCTACCCCCTGCGACACTCTCAACCACCTGCAAT
CGTGCTTCGACTCTGTCCGATATGATACACCTCCAGGCTCCCGACAGCGA
GGAGCAGGTCACGACCTTGGCGGCACCAGCCGCGCCAACGAGGCGGAAGA
GAAAAGCCGAGGTCAGTTGTTCGTTTCTTGGCTGGAAGTACGCTAGGTGT
CTCCACCACACCATTAACGAATGTGTAAGATCCGACCTCGTGTCGCCGTC
ACACGGGTGGCTATAGACACCGAGACACGAGGAGGAACGGGTGGTGGTGT
TGCCGTAGTTTAAGAGACATAGGGTACCCAAATCCACCAACACGCCTGCC
TCACGAGGAACTTTTACGGTTGCTGCCGTACCGCTCTACTCCCTTGAGTC
ACTCCCACACGTGCTCTCTGTTCGACGTTTGCTCGGTAGTTGGTCGCGAA
TGCCTTGCAAGATTCGAGTAACAGATCGCCAACGATATCCGAATGTCTTG
TTAGCGGATTTTGGCCAATTAAATTACCCCCGTTGCTAATCCCACCCGGG
CCTAACGTGCACAGCGCAAAAGCTAGCATTCGATGCCGCTGTTCATGAAA
AAACGTGCTCCACACACACCACCAGGCGCGGAGGCTATCGAACAAGCGCC
CTCGGAGGCTCGGTTTCGAGGGGGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5418:2578..3953- >mRNA_L-elsbetiae_contig5418.13649.1 ID=mRNA_L-elsbetiae_contig5418.13649.1|Name=mRNA_L-elsbetiae_contig5418.13649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig5418:2578..3953- (Laminarionema elsbetiae ELsaHSoW15)
GGTTCGGGTCGATACCACGGTCTCGTGTCTGCAGATACCATGCTCGAATG
TGTCGCTCGTTTGCTTCCGTTCGCGGACGAGCTCGAGGAGGGCGCCCATG
TGGATCCGCGCGTCTCGCTGCTCCGACACGCGGCTGAGGCTGTCCTGACG
CTCGCCAGTTGTATTGATCGAGATGCCAGCACGGCAGGGCACGAGGGCCC
GTCAAGCGCCGACGCCGAGGAGTTGCACCGCCAGGGAGACAAAGTGATTC
AGTTCGCTTGTGCCCTTGGGTTCGACGCGGTTGACGAGGGTTCGGGTCGA
TACCACGGTCTCGTGTCTGCAGATACCATGCTCGAATGTGTCGCTCGTTT
GCTTCCGTTCGCGGACGAGCTCGAGGAGGGCGCCCATGTGGATCCGCGCG
TCTCGCTGCTCCGACACGCGGCTGAGGCTGTCCTGACGCTCGCCAGTTGT
ATTGATCGAGATGCCAGCACGGCAGGGCACGAGGGCCCGTCAAGCGCCGA
CGCCGAGGAGTTGCACCGCCAGGGAGACAAAGTGATTCAGTTCGCTTGTG
CCCTTGGGTTCGACGCGGTTGACGAGGCTCCCGACAGCGAGGAGCAGGTC
ACGACCTTGGCGGCACCAGCCGCGCCAACGAGGCGGAAGAGAAAAGCCGA
GGCTCCCGACAGCGAGGAGCAGGTCACGACCTTGGCGGCACCAGCCGCGC
CAACGAGGCGGAAGAGAAAAGCCGAGGCGCGGAGGCTATCGAACAAGCGC
CCTCGGAGGCTCGGTTTCGAGGGGGAGGCGCGGAGGCTATCGAACAAGCG
CCCTCGGAGGCTCGGTTTCGAGGGGGAG back to top
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