mRNA_L-elsbetiae_contig5401.13629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5401.13629.1
Unique NamemRNA_L-elsbetiae_contig5401.13629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5401.13629.1 vs. uniprot
Match: D8LDX8_ECTSI (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 QVESLRSMLQASRDRNGVYIEPWRFDQMENTLASQGNQ 114
            +VESLRSMLQASRD+NGVYIEPWRFDQMENTLASQGNQ
Sbjct:  358 EVESLRSMLQASRDKNGVYIEPWRFDQMENTLASQGNQ 395
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BLAST of mRNA_L-elsbetiae_contig5401.13629.1 vs. uniprot
Match: A0A836CEW9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW9_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 9.650e-5
Identity = 20/37 (54.05%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QVESLRSMLQASRDRNGVYIEPWRFDQMENTLASQGN 111
            ++ESLRSMLQA+R++NGVY++P  ++Q+E+   SQ N
Sbjct:  322 EIESLRSMLQAAREKNGVYLDPAYYEQIESARESQKN 358
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5401.13629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDX8_ECTSI1.800e-1594.74Kinesin motor domain-containing protein (Fragment)... [more]
A0A836CEW9_9STRA9.650e-554.05P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5401contigL-elsbetiae_contig5401:683..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog2880.D8LDX8
KEGG koko:K10398,ko:K14400
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005819,GO:0005856,GO:0005871,GO:0005874,GO:0005875,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0008574,GO:0009653,GO:0009826,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030865,GO:0031122,GO:0032502,GO:0032506,GO:0032989,GO:0032991,GO:0040007,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043622,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0051301,GO:0060560,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902410,GO:1902850,GO:1903047,GO:1990939
EggNOG free text desc.ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsCOG5059@1,KOG0243@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03036,ko04812
Exons1
Model size153
Cds size132
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.0720198-UTR-L-elsbetiae_contig5401:682..7031622816565.0720198-UTR-L-elsbetiae_contig5401:682..703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5401 683..703 +
1691683651.0408432-UTR-L-elsbetiae_contig5401:682..7031691683651.0408432-UTR-L-elsbetiae_contig5401:682..703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5401 683..703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.0863492-CDS-L-elsbetiae_contig5401:703..8351622816565.0863492-CDS-L-elsbetiae_contig5401:703..835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5401 704..835 +
1691683651.056854-CDS-L-elsbetiae_contig5401:703..8351691683651.056854-CDS-L-elsbetiae_contig5401:703..835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5401 704..835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5401.13629.1prot_L-elsbetiae_contig5401.13629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5401 704..835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5401.13629.1

>prot_L-elsbetiae_contig5401.13629.1 ID=prot_L-elsbetiae_contig5401.13629.1|Name=mRNA_L-elsbetiae_contig5401.13629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MLQASRDRNGVYIEPWRFDQMENTLASQGNQARTASPCRLSWK*
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mRNA from alignment at L-elsbetiae_contig5401:683..835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5401.13629.1 ID=mRNA_L-elsbetiae_contig5401.13629.1|Name=mRNA_L-elsbetiae_contig5401.13629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=153bp|location=Sequence derived from alignment at L-elsbetiae_contig5401:683..835+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGAGAGCCTCCGGTCCATGCTGCAGGCCTCCCGGGACAGGAACGG
CGTCTACATAGAGCCCTGGCGTTTCGACCAGATGGAGAATACGCTGGCGT
CGCAGGGCAACCAGGCAAGGACCGCCTCTCCTTGTCGATTATCTTGGAAA
TAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5401:683..835+

>mRNA_L-elsbetiae_contig5401.13629.1 ID=mRNA_L-elsbetiae_contig5401.13629.1|Name=mRNA_L-elsbetiae_contig5401.13629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig5401:683..835+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCAGGCCTCCCGGGACAGGAACGGCGTCTACATAGAGCCCTGGCG
TTTCGACCAGATGGAGAATACGCTGGCGTCGCAGGGCAACCAGGCAAGGA
CCGCCTCTCCTTGTCGATTATCTTGGAAATAAATGCTGCAGGCCTCCCGG
GACAGGAACGGCGTCTACATAGAGCCCTGGCGTTTCGACCAGATGGAGAA
TACGCTGGCGTCGCAGGGCAACCAGGCAAGGACCGCCTCTCCTTGTCGAT
TATCTTGGAAATAA
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