mRNA_L-elsbetiae_contig5391.13602.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5391.13602.1
Unique NamemRNA_L-elsbetiae_contig5391.13602.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: D7G3Z1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.970e-33
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:    1 HTKTMKFTTAVVGALAAATCVQGFVVPAAS---IVRQQTRSSASALSMAGGKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFAE 342
            H+K +K   AVVG LA A+    FV P A+   + +QQ   +++ +    GKYDGKLWDDAAK DV S Y+ + P S+ NFDP VKD+AGNKCD+SGYYPGE  YKDPIRP VS+A+
Sbjct:    5 HSKPVK---AVVGVLALASAASAFVAPGAAGRGLTQQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPFVKDAAGNKCDSSGYYPGETMYKDPIRPAVSYAD 118
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A835YRS3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.470e-33
Identity = 68/110 (61.82%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   13 MKFTTAVVGALAAATCVQGFVVPAASIVRQQTRSSASALSMAGGKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFAE 342
            MKF  AVV  LA       FV P+  + ++    S S L  A GKYDGKLWD+AAK DVLSTYDAS P  ETNFDP  +D  GN CD SGYYPGEG+YKDPIRP VSFAE
Sbjct:    1 MKF--AVVALLALVAAASAFVAPSVPLAQR----SCSRL-FAEGKYDGKLWDEAAKQDVLSTYDASKPWGETNFDPYKRDGNGNACDPSGYYPGEGKYKDPIRPSVSFAE 103
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A1Z5KMX0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMX0_FISSO)

HSP 1 Score: 89.7 bits (221), Expect = 9.950e-21
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:  109 RSSASALSMAGGKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFA 339
            RS+ S  S   GKYD KLWD  AK DV + ++ +APRS  NF+P  +   GN  DASG+YPGEGRYKDPIRPDV+F 
Sbjct:   28 RSATSLFSSPYGKYDEKLWDMTAKLDVYNAWNPAAPRSPQNFNP-FETFEGNSPDASGFYPGEGRYKDPIRPDVNFT 103
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A7S3NH85_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NH85_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.270e-19
Identity = 35/66 (53.03%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:  142 GKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFA 339
            GKYDG+LWD  AK D+ + +D ++PRSETNF+P  +++ GN CD SG++PG+ +YKDP+RP + +A
Sbjct:   36 GKYDGQLWDMEAKMDIWNMWDPNSPRSETNFNPFERNNDGNACDPSGWFPGDTKYKDPMRPSMDYA 101
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A7S2CF61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CF61_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.120e-19
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:  142 GKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSF 336
            GKYD +LWD AAK DV + +D  +PRS+ NF+P  +++ GN  D SG++PGE +YKDP+RPD SF
Sbjct:   34 GKYDEQLWDIAAKQDVFAAWDPQSPRSDVNFNPFERNADGNAADCSGFFPGEAKYKDPMRPDASF 98
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A8J2SIU4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIU4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.890e-18
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:  109 RSSASALSMAG-GKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFA 339
            R+ AS +   G GKY+G+++    K D+   +D ++PRSETNF+P  +++ GN CD SGY+PGEG+Y DP RPDV FA
Sbjct:   53 RAPASVVVFGGAGKYEGQIFGFPEKKDLWENWDPNSPRSETNFNPFERNADGNACDCSGYFPGEGKYSDPARPDVDFA 130
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A7S4W711_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W711_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.680e-18
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   73 VVPAASIVRQQTRSSASALSMAGGKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFA 339
            V  A++ V  Q     + L+   G+YD KLWD  +K DV + +D SAPRS  NF+P  +   GN  DASG YPGE RYKDPIR DVS+A
Sbjct:   18 VASASAFVPAQNARMPTKLNFEYGEYDDKLWDQDSKKDVYNKWDPSAPRSTRNFNP-FETFKGNTPDASGIYPGENRYKDPIRGDVSYA 105
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A7S2VAU7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAU7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.300e-18
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:  121 SALSMAGGKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFA 339
            +A++M  GKYDG+ W+  AK ++ + +D + PRS  NF+P  +   GN  DASG+YPGEGRYKDP+RPDVSFA
Sbjct:   70 TAVNMEYGKYDGQEWNIDAKQEIYAAWDPAQPRSVFNFNP-FETFEGNSPDASGFYPGEGRYKDPVRPDVSFA 141
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A7S1GNG3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNG3_CYCTE)

HSP 1 Score: 82.4 bits (202), Expect = 1.070e-17
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:  103 QTRSSASALSMAGGKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFAE 342
            +T ++ SA +   GKYD KLWD+ AK D+ +++D S PRS  NF+P  +   GN  DASGYYPGE  YKDPIR DVSF +
Sbjct:   39 RTTTAISASAPVYGKYDEKLWDNEAKKDIYNSWDPSQPRSVFNFNP-FETFEGNSPDASGYYPGEIWYKDPIRGDVSFQQ 117
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BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Match: A0A7S1TN95_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN95_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.020e-17
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:   10 TMKFTTAVVGALAAATCVQGFVVPAASIVRQQTRSSASALSMAGGKYDGKLWDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKDPIRPDVSFAE 342
            TMK+T  +  AL        FV PAA+  R  T+ ++        KY G++WD  A  DV + +D +APR+E NF+P  K+  GN+CD +G++PG+G Y+DPIRPDV F +
Sbjct:   29 TMKYTAIIAAALFGG--ANAFV-PAATNGRMATKINS--------KYFGQVWDFEAMKDVYNQWDPNAPRTEDNFNPFEKNKDGNQCDPNGWFPGDGLYRDPIRPDVDFMK 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5391.13602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Z1_ECTSI1.970e-3355.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRS3_9STRA2.470e-3361.82Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A1Z5KMX0_FISSO9.950e-2158.44Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S3NH85_9STRA2.270e-1953.03Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2CF61_9STRA6.120e-1955.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SIU4_9STRA1.890e-1850.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4W711_9STRA2.680e-1850.56Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2VAU7_9STRA3.300e-1854.79Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1GNG3_CYCTE1.070e-1753.75Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1TN95_9STRA2.020e-1742.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5391contigL-elsbetiae_contig5391:5613..7531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue5e-14
Seed eggNOG ortholog35128.Thaps8571
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E4K9@1,2SBFZ@2759,2XD68@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000740.1
Exons3
Model size345
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5391.13602.1prot_L-elsbetiae_contig5391.13602.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5391 5613..7519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.3153808-CDS-L-elsbetiae_contig5391:5612..57081622816562.3153808-CDS-L-elsbetiae_contig5391:5612..5708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5391 5613..5708 -
1691683649.092435-CDS-L-elsbetiae_contig5391:5612..57081691683649.092435-CDS-L-elsbetiae_contig5391:5612..5708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5391 5613..5708 -
1622816562.3269696-CDS-L-elsbetiae_contig5391:7128..72051622816562.3269696-CDS-L-elsbetiae_contig5391:7128..7205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5391 7129..7205 -
1691683649.1026232-CDS-L-elsbetiae_contig5391:7128..72051691683649.1026232-CDS-L-elsbetiae_contig5391:7128..7205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5391 7129..7205 -
1622816562.3371274-CDS-L-elsbetiae_contig5391:7359..75191622816562.3371274-CDS-L-elsbetiae_contig5391:7359..7519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5391 7360..7519 -
1691683649.113179-CDS-L-elsbetiae_contig5391:7359..75191691683649.113179-CDS-L-elsbetiae_contig5391:7359..7519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5391 7360..7519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.3490636-UTR-L-elsbetiae_contig5391:7519..75311622816562.3490636-UTR-L-elsbetiae_contig5391:7519..7531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5391 7520..7531 -
1691683649.1252372-UTR-L-elsbetiae_contig5391:7519..75311691683649.1252372-UTR-L-elsbetiae_contig5391:7519..7531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5391 7520..7531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5391.13602.1

>prot_L-elsbetiae_contig5391.13602.1 ID=prot_L-elsbetiae_contig5391.13602.1|Name=mRNA_L-elsbetiae_contig5391.13602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MKFTTAVVGALAAATCVQGFVVPAASIVRQQTRSSASALSMAGGKYDGKL
WDDAAKADVLSTYDASAPRSETNFDPNVKDSAGNKCDASGYYPGEGRYKD
PIRPDVSFAE*
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mRNA from alignment at L-elsbetiae_contig5391:5613..7531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5391.13602.1 ID=mRNA_L-elsbetiae_contig5391.13602.1|Name=mRNA_L-elsbetiae_contig5391.13602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1919bp|location=Sequence derived from alignment at L-elsbetiae_contig5391:5613..7531- (Laminarionema elsbetiae ELsaHSoW15)
CACACCAAAACCATGAAGTTCACCACCGCTGTCGTCGGAGCTCTCGCTGC
CGCCACGTGCGTCCAGGGATTCGTTGTCCCTGCCGCCAGCATCGTCCGCC
AGCAGACCCGATCATCGGCCAGCGCGCTCAGCATGGCCGGCGGAAAGTAC
GACGGCAAGCTGTGGGATGACGGTAAGAAGAGAGAGAGAGAGAGGGGGGG
CCATGCGGCGTTCCTTGCGCCCGCGCGCAGGTTGCGTATGCTATGCATGA
TCTGTTCAGTGTGAAAGGGTGCATGATCCGAGGTGACGTTTCTCATTTTT
GTTTCCCTTTGTTTGCAAACTCCCAGCGGCCAAGGCCGACGTGCTCTCCA
CGTACGACGCCAGCGCACCCAGGAGCGAGACGAACTTCGACCCCAACGTG
AAGGTCAGTGGGTCTTGCTCTTCCGTTTGCTATCCGCGTGCCGGTTTTAT
GTGTGGCTCTCGGCCCGGCGCCAGCCGCTGGTGACGGCGGTGTAGGAGCG
CATGTTCCCTTACGAAAACGAGCAGCTGGCTGGCGCAAAAACAAATTGAG
CTGTGAACGTGTAGTTCTCGCGTGTGCGGTCGAAGAAGACGCGTTGAACC
CTGGCTTTCGTGGGCTCGCACTGGTGGTCATGTGGCAACTGAGTTGGGAT
GGGGTTTCGAGTTGGCAGCATGCGATCCCTGGTTGTTGAATCTCTACGAC
AATATTTCCCACCGCCTGCAAGTTCAAAATGTCGTAATCGGCACAACCAA
CCCTCGTAGACTTGTACACAAATTTCAACTCCCCTTCGCTGAAATACCAC
CCGAGACCGGTGCATCCTGCTGGCGATCCCGATAAGTTCGTTTTAGTTGT
TGCCAGACAAGCTTCTCGAATACATTAGGGTCGCGATATACTGCTGGTTG
TTCAAAGACGAGAGTGTACACCTGTAGGTGGCGGTGGTTGAAGTGACGTT
TCTATATGCGTACGCACGCGTGCGCTCTCGGTCATCACGCAACCGCACAT
TCGCAAAATTGCGGTGTGCTCTGTTCGGATCATGTAGACCTTTTCCGGAT
GTTTGCCTTGCGGCATGCTGCTCTTTGTCAGGCATAGATTGCGTCGTCAG
GCTGATGCAGGTCGCAACATGGGATTGTTGATTGAAGATGTGGCTGCATC
TTATTGATGTGTGATTAGCTGGCTGTGTTGTAGAGATTTTCAGATTTTTT
TGAAAGAGGCAGCTCTAATTTCACGTTAGTCTATATACACAAGGAAGATG
TAGTACATTTTTTATGTACGCCTTAGATCTGCCGTCACCCTTGCCCTACG
TGCAAGGGGGAAATAGTTTTTTTCGGGCGCCCTTGTTTCGTCTCGCTCGT
CTTTGAAAATGGTCAAGTCGTGTCTACGATCGATACATGATGTAGTCCAT
CATCCATTAGATACGTTCTTCGAGGTATAATTTTCGTCGCGCCCACAAAT
TACCGTCCATTTATCAGTCCGGGGGAAAGGGTTTCAAACACTGCTCGATG
TACACACAAACGATTATCAAGGTATATCGTACAAAACTACTTCCAAAGAT
AATTTCACGATGAATAATTTCTGCCCCTAGAATATTCCACACGTAGACTA
CATACATCGTGTATTTATTCACTCGATGCTTTTGTTGTCGTTGCGCGCGC
ATCGAAGAGACGATTAGATCAGAAAGAGTCCTTATTATCTTCCAGTTTAA
TTCCGGGTTTCGTGTTGACCCGCAAGATGAGAGAATGCACCCCCACCCAC
CCCCGCCCGTCTGACCCCCACCAACTCACCCACCGATGCACACGCCCTGG
GCTGTCGTTTCTTTTCGGGACAGGACTCCGCCGGAAACAAGTGCGATGCG
TCGGGATACTACCCCGGAGAGGGCAGGTACAAAGACCCCATCCGCCCCGA
CGTCAGCTTCGCCGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5391:5613..7531-

>mRNA_L-elsbetiae_contig5391.13602.1 ID=mRNA_L-elsbetiae_contig5391.13602.1|Name=mRNA_L-elsbetiae_contig5391.13602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig5391:5613..7531- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCACCACCGCTGTCGTCGGAGCTCTCGCTGCCGCCACGTGCGT
CCAGGGATTCGTTGTCCCTGCCGCCAGCATCGTCCGCCAGCAGACCCGAT
CATCGGCCAGCGCGCTCAGCATGGCCGGCGGAAAGTACGACGGCAAGCTG
TGGGATGACGATGAAGTTCACCACCGCTGTCGTCGGAGCTCTCGCTGCCG
CCACGTGCGTCCAGGGATTCGTTGTCCCTGCCGCCAGCATCGTCCGCCAG
CAGACCCGATCATCGGCCAGCGCGCTCAGCATGGCCGGCGGAAAGTACGA
CGGCAAGCTGTGGGATGACGCGGCCAAGGCCGACGTGCTCTCCACGTACG
ACGCCAGCGCACCCAGGAGCGAGACGAACTTCGACCCCAACGTGAAGCGG
CCAAGGCCGACGTGCTCTCCACGTACGACGCCAGCGCACCCAGGAGCGAG
ACGAACTTCGACCCCAACGTGAAGGACTCCGCCGGAAACAAGTGCGATGC
GTCGGGATACTACCCCGGAGAGGGCAGGTACAAAGACCCCATCCGCCCCG
ACGTCAGCTTCGCCGAGTGAGACTCCGCCGGAAACAAGTGCGATGCGTCG
GGATACTACCCCGGAGAGGGCAGGTACAAAGACCCCATCCGCCCCGACGT
CAGCTTCGCCGAGTGA
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