mRNA_L-elsbetiae_contig5360.13553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5360.13553.1
Unique NamemRNA_L-elsbetiae_contig5360.13553.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5360.13553.1 vs. uniprot
Match: D7FQI5_ECTSI (PseudoU_synth_1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQI5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.350e-13
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:  260 PPHGPSTAELDGKTTEKPP--------TTCVFCGTHFPTRSSMFRHLERPSTTCAAPRKDRGEKVFLV 439
            P   PS A    +T+E PP        TTC FC   FPTRS+MFRHLERP  TC APR+D GEKV LV
Sbjct:    6 PEVAPSEAAAGDRTSETPPSPKRAPPVTTCSFCSERFPTRSAMFRHLERPCATCPAPREDYGEKVLLV 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5360.13553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQI5_ECTSI2.350e-1355.88PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5360contigL-elsbetiae_contig5360:12135..12573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog2880.D7FQI5
Preferred namePUS1
KEGG koko:K06173,ko:K20674
KEGG Pathwayko04624,map04624
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0101@1,KOG2553@2759
EC5.4.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03016
Exons1
Model size439
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.054697-UTR-L-elsbetiae_contig5360:12134..123901622816558.054697-UTR-L-elsbetiae_contig5360:12134..12390Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5360 12135..12390 +
1691683646.254621-UTR-L-elsbetiae_contig5360:12134..123901691683646.254621-UTR-L-elsbetiae_contig5360:12134..12390Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5360 12135..12390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.0675752-CDS-L-elsbetiae_contig5360:12390..125731622816558.0675752-CDS-L-elsbetiae_contig5360:12390..12573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5360 12391..12573 +
1691683646.2707558-CDS-L-elsbetiae_contig5360:12390..125731691683646.2707558-CDS-L-elsbetiae_contig5360:12390..12573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5360 12391..12573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5360.13553.1prot_L-elsbetiae_contig5360.13553.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5360 12391..12573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5360.13553.1

>prot_L-elsbetiae_contig5360.13553.1 ID=prot_L-elsbetiae_contig5360.13553.1|Name=mRNA_L-elsbetiae_contig5360.13553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MPPHGPSTAELDGKTTEKPPTTCVFCGTHFPTRSSMFRHLERPSTTCAAP
RKDRGEKVFLV
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mRNA from alignment at L-elsbetiae_contig5360:12135..12573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5360.13553.1 ID=mRNA_L-elsbetiae_contig5360.13553.1|Name=mRNA_L-elsbetiae_contig5360.13553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=439bp|location=Sequence derived from alignment at L-elsbetiae_contig5360:12135..12573+ (Laminarionema elsbetiae ELsaHSoW15)
GACTGTGGAACACTGCTCGTCACGGGCTCGCACTGCACGCACACCACATA
AAACCTGTAGTACGAAGCTCGTGAGACCTGTGCTAGCTCTTAGGAGAAAC
TACTCGGGACATACGATTATCACGTATCTCCACTGAGCCACTCGCTGGTG
CCACAAGGCCACAAGGGCATCACAAAGCATCACAAGGGCATTCTCTGCTG
CCACAACACGGACCGCTCTCCCTGGAGAGGTGGAGAGGCGTGAAGGGTGC
GGGACGATGCCTCCCCACGGTCCTAGCACCGCCGAGCTGGATGGGAAAAC
AACAGAGAAACCACCGACCACGTGTGTGTTTTGCGGTACGCATTTCCCGA
CGAGAAGCTCGATGTTCCGCCACCTTGAGCGCCCATCTACGACGTGCGCG
GCGCCACGAAAGGATAGAGGCGAAAAGGTTTTTCTCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5360:12135..12573+

>mRNA_L-elsbetiae_contig5360.13553.1 ID=mRNA_L-elsbetiae_contig5360.13553.1|Name=mRNA_L-elsbetiae_contig5360.13553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig5360:12135..12573+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCCCCACGGTCCTAGCACCGCCGAGCTGGATGGGAAAACAACAGA
GAAACCACCGACCACGTGTGTGTTTTGCGGTACGCATTTCCCGACGAGAA
GCTCGATGTTCCGCCACCTTGAGCGCCCATCTACGACGTGCGCGGCGCCA
CGAAAGGATAGAGGCGAAAAGGTTTTTCTCGTCATGCCTCCCCACGGTCC
TAGCACCGCCGAGCTGGATGGGAAAACAACAGAGAAACCACCGACCACGT
GTGTGTTTTGCGGTACGCATTTCCCGACGAGAAGCTCGATGTTCCGCCAC
CTTGAGCGCCCATCTACGACGTGCGCGGCGCCACGAAAGGATAGAGGCGA
AAAGGTTTTTCTCGTC
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