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Homology
BLAST of mRNA_L-elsbetiae_contig536.13551.1 vs. uniprot
Match: A0A6H5K1I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I7_9PHAE) HSP 1 Score: 358 bits (919), Expect = 9.030e-123 Identity = 171/237 (72.15%), Postives = 202/237 (85.23%), Query Frame = 1
Query: 1 QVHATARRKAKEKQDFLSGNFRKTWKTGFKALKDAERTNRMSDKQLPVRSYSLQDNEVWQMAEIRRWFDSHSSPQAVEGFDPLASGYVTSGDKNDALPALLRTRRVPTPEWATAEDRKVLEESQTKRDVAMSLKALQDLHFTDFEGNLNIQRARTAVLASRLKPPKGPGAGHTHVSGFRSPPWKERPPQEAPRYKCPKLLRERDLFIQAGGGLETFNAKQEETRRRAVAMKAGSGIF 711
QVH TARR KEKQDFLSGNF +TW+TGF ALK +E+ NRMSDKQLPVRSYSL DNEVW+M EIRRWFDSHSSPQA+ GF+PLASGY S DKN+ LP L+R +RVPTP+WA AEDRK++EES+ KR+ AM L+ LQD HF+DFEGNL++QRAR+AVLASRLKPPKG G HTHV+GFR+PPWKERPPQEAP YK P + R+RD +QAGGGLET+NA +++T+RRA AM AGS I+
Sbjct: 21 QVHKTARRLGKEKQDFLSGNFVRTWRTGFNALKASEQDNRMSDKQLPVRSYSLVDNEVWRMPEIRRWFDSHSSPQAIGGFNPLASGYTISSDKNEVLPPLMRIQRVPTPKWAAAEDRKIIEESRDKREQAMRLRELQDRHFSDFEGNLDVQRARSAVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAPSYKPPHVFRDRDFVVQAGGGLETYNANRKKTKRRAAAMTAGSDIW 257
BLAST of mRNA_L-elsbetiae_contig536.13551.1 vs. uniprot
Match: D7FQG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG9_ECTSI) HSP 1 Score: 325 bits (834), Expect = 3.480e-110 Identity = 157/216 (72.69%), Postives = 182/216 (84.26%), Query Frame = 1
Query: 1 QVHATARRKAKEKQDFLSGNFRKTWKTGFKALKDAERTNRMSDKQLPVRSYSLQDNEVWQMAEIRRWFDSHSSPQAVEGFDPLASGYVTSGDKNDALPALLRTRRVPTPEWATAEDRKVLEESQTKRDVAMSLKALQDLHFTDFEGNLNIQRARTAVLASRLKPPKGPGAGHTHVSGFRSPPWKERPPQEAPRYKCPKLLRERDLFIQAGGGLETF 648
QV TARR A+EKQDFLSGNF +TW+TGF ALK +E+ NRMSDKQLPVRS+SL DNEVWQMAEIRRWFDSHSSPQA++GF+PLASGY S DKN ALP LLR +RVPTP+WA AEDRK++E+S+ KR+ AM LQD HF DFEGNL++QRARTAVLASRLKPPKG G HTHV+GFR+PPWKERPPQEAPRYK P++ R+RD+F+Q G F
Sbjct: 21 QVQKTARRLAREKQDFLSGNFVRTWRTGFNALKASEQDNRMSDKQLPVRSHSLVDNEVWQMAEIRRWFDSHSSPQAIDGFNPLASGYTMSSDKNGALPPLLRIQRVPTPKWAAAEDRKIIEKSRDKREQAMRFSELQDRHFADFEGNLDVQRARTAVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAPRYKPPQVFRDRDIFLQVTGPSVAF 236
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 68.2 |
| Seed ortholog evalue | 6.2e-09 |
| Seed eggNOG ortholog | 44056.XP_009041826.1 |
| KEGG rclass | RC00037,RC00041 |
| KEGG ko | ko:K00679,ko:K08900 |
| KEGG Reaction | R05333 |
| KEGG Pathway | ko00561,map00561 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | respiratory chain complex III assembly |
| EggNOG OGs | COG0465@1,KOG0743@2759 |
| EC | 2.3.1.158 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03029 |
| Exons | 4 |
| Model size | 729 |
| Cds size | 729 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816557.8653262-CDS-L-elsbetiae_contig536:35815..35920 | 1622816557.8653262-CDS-L-elsbetiae_contig536:35815..35920 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 35816..35920 - |
| 1691683646.1123793-CDS-L-elsbetiae_contig536:35815..35920 | 1691683646.1123793-CDS-L-elsbetiae_contig536:35815..35920 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 35816..35920 - |
| 1622816557.8771942-CDS-L-elsbetiae_contig536:36506..36851 | 1622816557.8771942-CDS-L-elsbetiae_contig536:36506..36851 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 36507..36851 - |
| 1691683646.129677-CDS-L-elsbetiae_contig536:36506..36851 | 1691683646.129677-CDS-L-elsbetiae_contig536:36506..36851 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 36507..36851 - |
| 1622816557.8872406-CDS-L-elsbetiae_contig536:37022..37166 | 1622816557.8872406-CDS-L-elsbetiae_contig536:37022..37166 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 37023..37166 - |
| 1691683646.1389785-CDS-L-elsbetiae_contig536:37022..37166 | 1691683646.1389785-CDS-L-elsbetiae_contig536:37022..37166 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 37023..37166 - |
| 1622816557.8971105-CDS-L-elsbetiae_contig536:37441..37576 | 1622816557.8971105-CDS-L-elsbetiae_contig536:37441..37576 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 37442..37576 - |
| 1691683646.1480072-CDS-L-elsbetiae_contig536:37441..37576 | 1691683646.1480072-CDS-L-elsbetiae_contig536:37441..37576 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig536 37442..37576 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig536.13551.1 >prot_L-elsbetiae_contig536.13551.1 ID=prot_L-elsbetiae_contig536.13551.1|Name=mRNA_L-elsbetiae_contig536.13551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
QVHATARRKAKEKQDFLSGNFRKTWKTGFKALKDAERTNRMSDKQLPVRS
YSLQDNEVWQMAEIRRWFDSHSSPQAVEGFDPLASGYVTSGDKNDALPAL
LRTRRVPTPEWATAEDRKVLEESQTKRDVAMSLKALQDLHFTDFEGNLNI
QRARTAVLASRLKPPKGPGAGHTHVSGFRSPPWKERPPQEAPRYKCPKLL
RERDLFIQAGGGLETFNAKQEETRRRAVAMKAGSGIFGGAHE* back to topmRNA from alignment at L-elsbetiae_contig536:35816..37576- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig536.13551.1 ID=mRNA_L-elsbetiae_contig536.13551.1|Name=mRNA_L-elsbetiae_contig536.13551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1761bp|location=Sequence derived from alignment at L-elsbetiae_contig536:35816..37576- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTACACGCAACGGCAAGGCGGAAAGCAAAGGAAAAGCAGGATTTCTT
GAGCGGAAACTTCAGGAAGACATGGAAAACAGGGTTCAAGGCACTCAAGG
ACGCCGAGCGAACCAATAGAATGAGCGATAAACAGGTCAGGCGGTACAAA
TAGAGATAAAGCAAGAGTGTTGACACGGAAGGGAAGTGGCGATACTCCCG
TCTAAATAGCTTGCCACTTTCATTGGACACGGCGTTTTCCCGTAAGGCGT
TTCCCGATGAGAACATGGGCCAAGCCACAACAATCATACCCATTTTACTT
GGTCCTGCTGTAAACAAGGTCACGTCGCCAGTTGCTTCAGAGGAACCAAT
TGCAATGGAAACAACAGTTTATTTAGCATGTCAACCCGATGATCGTGTTT
TTGTCTCCAGTTACCTGTACGCAGCTACTCCCTTCAGGACAACGAAGTAT
GGCAAATGGCGGAAATACGGCGATGGTTCGACTCTCACAGTTCGCCGCAG
GCAGTAGAAGGCTTTGATCCTTTGGCCTCTGGGTATGTAACATCAGGGGA
TAAGGTACGTCTTCACGTTAGGCACACGCTTTATGTAGTAGCTCTTCGAC
ACGGTAAATTCCCAATGCCGGGCGCATTTCGTACTTGTTTGCTGCTGACG
ACCAAAAAATAGCAGAGAACACGTTCTGCTGACTCCCAGCGCACCTCTTG
TCGTACTGTCCATTTCGTCGGCCAGAACGACGCTCTGCCTGCTCTTTTGC
GAACTCGCCGGGTTCCTACCCCAGAATGGGCTACTGCTGAAGACAGGAAG
GTGCTTGAAGAATCGCAGACAAAGCGCGACGTGGCCATGAGTTTGAAGGC
ATTGCAGGACCTGCATTTCACGGATTTCGAGGGTAACCTTAACATTCAGC
GGGCACGGACTGCAGTTTTGGCGTCCCGGTTGAAACCTCCAAAGGGCCCG
GGAGCGGGGCATACTCACGTGTCGGGCTTCCGATCTCCGCCATGGAAAGA
ACGCCCACCTCAGGAAGCACCCCGGTACAAATGCCCGAAACTTCTTCGAG
AGAGGGACTTGTTCATCCAGGTGGGAATTATGCTGGTGTGTCGAAAGGAT
CAGACAACAACCGTTGATCTTGCTTTGCAATCCCCTTTCCTTCCCTCCGC
TATTCCAACTTAAAATGAGCAGGGTTGGCACTTGAGAAAGTGGACGTATA
CAAAAATCCGTTTTTACGGGCATGGGGGACACTCGTACGGCGTTTCCCGG
GGATAGCATTCTCGTGGCATTACGAACCGTCTTAAGCGTTGCGGTTCGAA
CGGAACGCGCACAATCCAAACAGGGTGCTGTTGCTATATTCACGTCAAAA
CGGTTCAAAAATTGCCCTCGAACACGCCATTTGTGTCCGAGGGAATTTTT
TAGTCTTTCCCTCCTTTCTCGGAAACGTTGAACGAGCCCATAGTAAGGTA
AAACCATTCTCTGCCGAAGTATGGAACACATCACCGTCCCCCGTGAGCAT
TAATTTCGATTCGTTACAAGCGCAAAGAGAAGGGACAACTGGGCACACCC
ATAAGGTTTCATCGAACAACCCGGTAACAGCAGTATATGGTTGGGGCCCA
GAAGATGTGATGTGCTGCTGACAAGCTCCACTTTTTTTCTTTTTTCTCGC
ACCCAGGCGGGCGGAGGCTTGGAAACTTTCAACGCCAAACAAGAAGAGAC
CAGACGGAGGGCTGTTGCAATGAAAGCTGGATCAGGAATTTTCGGCGGGG
CCCACGAATAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig536:35816..37576- >mRNA_L-elsbetiae_contig536.13551.1 ID=mRNA_L-elsbetiae_contig536.13551.1|Name=mRNA_L-elsbetiae_contig536.13551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig536:35816..37576- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTACACGCAACGGCAAGGCGGAAAGCAAAGGAAAAGCAGGATTTCTT
GAGCGGAAACTTCAGGAAGACATGGAAAACAGGGTTCAAGGCACTCAAGG
ACGCCGAGCGAACCAATAGAATGAGCGATAAACAGCAGGTACACGCAACG
GCAAGGCGGAAAGCAAAGGAAAAGCAGGATTTCTTGAGCGGAAACTTCAG
GAAGACATGGAAAACAGGGTTCAAGGCACTCAAGGACGCCGAGCGAACCA
ATAGAATGAGCGATAAACAGTTACCTGTACGCAGCTACTCCCTTCAGGAC
AACGAAGTATGGCAAATGGCGGAAATACGGCGATGGTTCGACTCTCACAG
TTCGCCGCAGGCAGTAGAAGGCTTTGATCCTTTGGCCTCTGGGTATGTAA
CATCAGGGGATAAGTTACCTGTACGCAGCTACTCCCTTCAGGACAACGAA
GTATGGCAAATGGCGGAAATACGGCGATGGTTCGACTCTCACAGTTCGCC
GCAGGCAGTAGAAGGCTTTGATCCTTTGGCCTCTGGGTATGTAACATCAG
GGGATAAGAACGACGCTCTGCCTGCTCTTTTGCGAACTCGCCGGGTTCCT
ACCCCAGAATGGGCTACTGCTGAAGACAGGAAGGTGCTTGAAGAATCGCA
GACAAAGCGCGACGTGGCCATGAGTTTGAAGGCATTGCAGGACCTGCATT
TCACGGATTTCGAGGGTAACCTTAACATTCAGCGGGCACGGACTGCAGTT
TTGGCGTCCCGGTTGAAACCTCCAAAGGGCCCGGGAGCGGGGCATACTCA
CGTGTCGGGCTTCCGATCTCCGCCATGGAAAGAACGCCCACCTCAGGAAG
CACCCCGGTACAAATGCCCGAAACTTCTTCGAGAGAGGGACTTGTTCATC
CAGAACGACGCTCTGCCTGCTCTTTTGCGAACTCGCCGGGTTCCTACCCC
AGAATGGGCTACTGCTGAAGACAGGAAGGTGCTTGAAGAATCGCAGACAA
AGCGCGACGTGGCCATGAGTTTGAAGGCATTGCAGGACCTGCATTTCACG
GATTTCGAGGGTAACCTTAACATTCAGCGGGCACGGACTGCAGTTTTGGC
GTCCCGGTTGAAACCTCCAAAGGGCCCGGGAGCGGGGCATACTCACGTGT
CGGGCTTCCGATCTCCGCCATGGAAAGAACGCCCACCTCAGGAAGCACCC
CGGTACAAATGCCCGAAACTTCTTCGAGAGAGGGACTTGTTCATCCAGGC
GGGCGGAGGCTTGGAAACTTTCAACGCCAAACAAGAAGAGACCAGACGGA
GGGCTGTTGCAATGAAAGCTGGATCAGGAATTTTCGGCGGGGCCCACGAA
TAGGCGGGCGGAGGCTTGGAAACTTTCAACGCCAAACAAGAAGAGACCAG
ACGGAGGGCTGTTGCAATGAAAGCTGGATCAGGAATTTTCGGCGGGGCCC
ACGAATAG back to top
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