mRNA_L-elsbetiae_contig5359.13545.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5359.13545.1
Unique NamemRNA_L-elsbetiae_contig5359.13545.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: D8LSR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSR0_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.560e-32
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    4 CPAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            CPAAL+PQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG
Sbjct:  454 CPAALRPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 511
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: A0A8D8ZQ06_9HEMI (Actin-related protein 6 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8ZQ06_9HEMI)

HSP 1 Score: 71.2 bits (173), Expect = 8.310e-14
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 CPAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            CP   +P  Y N+LLTGG C  P +RER+  D+RA AP   EVNV+LP  P+ +AW G
Sbjct:  106 CPEHTRPHLYENILLTGGCCGFPGMRERVASDVRALAPDEMEVNVVLPPNPITYAWEG 163
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: A0A673J7I7_9TELE (Actin-related protein 6-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673J7I7_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 2.180e-13
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    7 PAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            P  +QP FY N++LTGGN   P  R+R+Y ++RA AP+  +V+V+LP+ P+ + W G
Sbjct:   85 PEEMQPHFYKNIVLTGGNTLFPGFRDRVYTEVRALAPVEYQVSVVLPQNPICYPWEG 141
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: A0A672NPK4_SINGR (Actin-related protein 6-like n=5 Tax=Cyprininae TaxID=2743694 RepID=A0A672NPK4_SINGR)

HSP 1 Score: 71.6 bits (174), Expect = 2.420e-13
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 PAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            P  +QP FY N++LTGGN   P  R+R+Y+++RA AP+  EV+V+LP+ P+ + W G
Sbjct:  225 PEEMQPHFYKNIVLTGGNTLFPGYRDRVYKEVRALAPVEYEVSVVLPQNPICYPWEG 281
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: F1QVP8_DANRE (Actin-related protein 6 n=30 Tax=Otophysi TaxID=186626 RepID=F1QVP8_DANRE)

HSP 1 Score: 72.0 bits (175), Expect = 2.470e-13
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 PAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            P  +QP FY N+LLTGGN   P  R+R+Y+++RA AP+  +V+V+LP  P+ ++W G
Sbjct:  306 PEEMQPHFYKNILLTGGNTLFPGFRDRVYKEVRALAPVEYDVSVVLPNNPICYSWEG 362
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: A0A3N0YCW5_ANAGA (Actin-related protein 6 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YCW5_ANAGA)

HSP 1 Score: 72.0 bits (175), Expect = 2.750e-13
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 PAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            P  +QP FY N++LTGGN   P  R+R+Y+++RA AP+  EV+V+LP+ P+ + W G
Sbjct:  985 PEEMQPHFYKNIVLTGGNTLFPGFRDRVYKEVRALAPVEYEVSVVLPQNPICYPWEG 1041
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: A0A3B4E8B2_PYGNA (Actin related protein 6 n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4E8B2_PYGNA)

HSP 1 Score: 71.6 bits (174), Expect = 3.520e-13
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 PAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            P  +QP FY N++LTGGN   P  R+R+Y+++RA AP   +V+V+LP+ P+ +AW G
Sbjct:  328 PEEMQPHFYKNIVLTGGNALFPGFRDRVYKEVRALAPAEFQVSVVLPQNPICYAWEG 384
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BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: UPI0007B920FB (actin-related protein 6-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B920FB)

HSP 1 Score: 71.6 bits (174), Expect = 3.730e-13
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 PAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            P  +QP FY N++LTGGN   P  R+R+Y+++RA AP+  EV+V+LP+ P+ + W G
Sbjct:  479 PEEMQPHFYKNIVLTGGNTLFPGYRDRVYKEVRALAPVEYEVSVVLPQNPICYPWEG 535
[Close]
BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: A0A8D8ZR67_9HEMI (Actin-related protein 6 n=5 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8ZR67_9HEMI)

HSP 1 Score: 71.2 bits (173), Expect = 4.700e-13
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 CPAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            CP   +P  Y N+LLTGG C  P +RER+  D+RA AP   EVNV+LP  P+ +AW G
Sbjct:  304 CPEHTRPHLYENILLTGGCCGFPGMRERVASDVRALAPDEMEVNVVLPPNPITYAWEG 361
[Close]
BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Match: A0A8C1B8E6_CYPCA (Actin related protein 6 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1B8E6_CYPCA)

HSP 1 Score: 70.9 bits (172), Expect = 6.210e-13
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 PAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRG 177
            P  +QP FY N++LTGGN   P  R+R+Y+++RA AP+  +V+V+LP+ P+ + W G
Sbjct:  293 PEEMQPHFYKNIVLTGGNALFPGYRDRVYKEVRALAPVEYQVSVVLPQNPICYPWEG 349
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5359.13545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSR0_ECTSI1.560e-3298.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8D8ZQ06_9HEMI8.310e-1451.72Actin-related protein 6 n=1 Tax=Cacopsylla melanon... [more]
A0A673J7I7_9TELE2.180e-1345.61Actin-related protein 6-like n=1 Tax=Sinocyclochei... [more]
A0A672NPK4_SINGR2.420e-1347.37Actin-related protein 6-like n=5 Tax=Cyprininae Ta... [more]
F1QVP8_DANRE2.470e-1347.37Actin-related protein 6 n=30 Tax=Otophysi TaxID=18... [more]
A0A3N0YCW5_ANAGA2.750e-1347.37Actin-related protein 6 n=1 Tax=Anabarilius graham... [more]
A0A3B4E8B2_PYGNA3.520e-1347.37Actin related protein 6 n=1 Tax=Pygocentrus natter... [more]
UPI0007B920FB3.730e-1347.37actin-related protein 6-like n=1 Tax=Sinocyclochei... [more]
A0A8D8ZR67_9HEMI4.700e-1351.72Actin-related protein 6 n=5 Tax=Cacopsylla melanon... [more]
A0A8C1B8E6_CYPCA6.210e-1345.61Actin related protein 6 n=1 Tax=Cyprinus carpio Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5359contigL-elsbetiae_contig5359:11344..11520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue4.6e-27
Seed eggNOG ortholog2880.D8LSR0
Preferred nameACTR6
KEGG koko:K11662
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034728,GO:0040029,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070828,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0098687,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin remodeling
EggNOG OGsKOG0680@1,KOG0680@2759
Ec32 ortholog descriptionActin-related protein
Ec32 orthologEc-15_002940.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.1981404-CDS-L-elsbetiae_contig5359:11343..115201622816557.1981404-CDS-L-elsbetiae_contig5359:11343..11520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5359 11344..11520 -
1691683645.6290267-CDS-L-elsbetiae_contig5359:11343..115201691683645.6290267-CDS-L-elsbetiae_contig5359:11343..11520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5359 11344..11520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5359.13545.1prot_L-elsbetiae_contig5359.13545.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5359 11344..11520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5359.13545.1

>prot_L-elsbetiae_contig5359.13545.1 ID=prot_L-elsbetiae_contig5359.13545.1|Name=mRNA_L-elsbetiae_contig5359.13545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
SCPAALQPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPE
EPMLHAWRG
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mRNA from alignment at L-elsbetiae_contig5359:11344..11520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5359.13545.1 ID=mRNA_L-elsbetiae_contig5359.13545.1|Name=mRNA_L-elsbetiae_contig5359.13545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig5359:11344..11520- (Laminarionema elsbetiae ELsaHSoW15)
AGCTGTCCGGCGGCGTTGCAACCACAGTTCTACGCGAACGTCCTCCTGAC
GGGAGGCAACTGCGCCATCCCGAACCTCCGAGAGCGGCTGTACAGAGATC
TCAGGGCGTCCGCCCCGATCCACTGCGAGGTCAACGTCATCCTCCCCGAG
GAGCCGATGCTGCACGCGTGGAGAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5359:11344..11520-

>mRNA_L-elsbetiae_contig5359.13545.1 ID=mRNA_L-elsbetiae_contig5359.13545.1|Name=mRNA_L-elsbetiae_contig5359.13545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig5359:11344..11520- (Laminarionema elsbetiae ELsaHSoW15)
AGCTGTCCGGCGGCGTTGCAACCACAGTTCTACGCGAACGTCCTCCTGAC
GGGAGGCAACTGCGCCATCCCGAACCTCCGAGAGCGGCTGTACAGAGATC
TCAGGGCGTCCGCCCCGATCCACTGCGAGGTCAACGTCATCCTCCCCGAG
GAGCCGATGCTGCACGCGTGGAGAGGTAGCTGTCCGGCGGCGTTGCAACC
ACAGTTCTACGCGAACGTCCTCCTGACGGGAGGCAACTGCGCCATCCCGA
ACCTCCGAGAGCGGCTGTACAGAGATCTCAGGGCGTCCGCCCCGATCCAC
TGCGAGGTCAACGTCATCCTCCCCGAGGAGCCGATGCTGCACGCGTGGAG
AGGT
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