mRNA_L-elsbetiae_contig5348.13527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5348.13527.1
Unique NamemRNA_L-elsbetiae_contig5348.13527.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5348.13527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5348contigL-elsbetiae_contig5348:9070..10336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1269
Cds size804
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816555.5185757-UTR-L-elsbetiae_contig5348:9069..95321622816555.5185757-UTR-L-elsbetiae_contig5348:9069..9532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5348 9070..9532 +
1691683644.4081106-UTR-L-elsbetiae_contig5348:9069..95321691683644.4081106-UTR-L-elsbetiae_contig5348:9069..9532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5348 9070..9532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816555.5318236-CDS-L-elsbetiae_contig5348:9532..103361622816555.5318236-CDS-L-elsbetiae_contig5348:9532..10336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5348 9533..10336 +
1691683644.4168446-CDS-L-elsbetiae_contig5348:9532..103361691683644.4168446-CDS-L-elsbetiae_contig5348:9532..10336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5348 9533..10336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5348.13527.1prot_L-elsbetiae_contig5348.13527.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5348 9533..10336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5348.13527.1

>prot_L-elsbetiae_contig5348.13527.1 ID=prot_L-elsbetiae_contig5348.13527.1|Name=mRNA_L-elsbetiae_contig5348.13527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=268bp
MGTASKYAEAAPGEQTVPAAEPEDRVSTSSTATTAGTPSSAPPQDFASST
PGLSSPPPSSTAPAISAVGATAISVSDSKNAVPSFAALCPPAVPAATADS
CLIAIGVSVAATLVAASPGLTPSSATTVADVAGALASASRDTAGEFTSPT
THAFSSSASTPFLPTMTSSSSAAVAASPVSSDGISSLPISATKTSPGREM
SPGNLPTFGDSSETTSLAAPVARFEVVTGAAGGMSPSERASPTSPAAAAT
GAPLTNDAITPAPAAEPL
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mRNA from alignment at L-elsbetiae_contig5348:9070..10336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5348.13527.1 ID=mRNA_L-elsbetiae_contig5348.13527.1|Name=mRNA_L-elsbetiae_contig5348.13527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1267bp|location=Sequence derived from alignment at L-elsbetiae_contig5348:9070..10336+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGAACGGGCTAAGTCCAGCCGCAGCGCCCCCGTCACTTTTACCATGTT
CGACCGATCCCCTCGGCAACGGGTCACTTCTTGGCGGCGAAAAAGGCGTC
GAGCTCGCCGGCGAAACTTCTGCTTCACTCACGCCTGGCTGCTCCAACCC
ACCACCCTGACCACTGCCGGAGAAAGACAGCGGGTCGTCGTCGCCGCACG
CCTCATCCCGGAACGGTTCGGCGCATTCCGGCGAGCCCGTGATGGGGCTG
ACGATGCCTCCGTCGCTGGCCAAAGCAGGCGACGGCGGTGCTTCGGAAAG
GTGTGATGTCGACATCCCATCGCCTCGCTCGCCCGAAACCCCACCGCTCG
AATCCGGTCTGCAACCGTGCGGTGGAGATTCCTGGTCGACGTGAGACACA
GGTGACACTGCTGCTGTTGCTCCGCCCCAAAGATCACAAGCTTCACCCGG
CTCCTCCGGCTTCATGGGGACGGCTTCCAAGTATGCAGAAGCAGCGCCAG
GAGAACAGACGGTACCAGCAGCCGAGCCGGAAGATAGAGTCTCGACCTCT
TCCACGGCCACCACGGCAGGTACACCATCCAGCGCCCCTCCGCAGGACTT
TGCGTCTTCGACCCCTGGATTATCGTCCCCCCCGCCATCTTCTACCGCCC
CCGCCATCTCTGCTGTCGGCGCGACAGCAATCAGCGTTTCCGATTCCAAA
AATGCCGTTCCCTCCTTCGCTGCACTTTGTCCCCCGGCTGTACCGGCCGC
CACCGCTGATTCCTGTTTGATAGCAATTGGGGTTTCCGTCGCAGCAACCC
TCGTCGCCGCATCCCCCGGGCTAACCCCCTCCTCGGCAACTACCGTCGCC
GATGTTGCCGGTGCTCTTGCTTCCGCTTCGAGGGACACCGCCGGGGAATT
CACCTCGCCCACCACGCACGCGTTCTCGTCTTCGGCCTCCACCCCGTTCC
TTCCCACGATGACCTCGTCCTCTTCTGCTGCAGTCGCCGCATCACCGGTC
TCCTCAGACGGCATATCGTCGCTGCCGATCTCCGCCACCAAAACGTCACC
CGGCAGAGAAATGTCGCCCGGCAACCTCCCCACCTTCGGCGATTCCTCCG
AAACAACGTCGTTGGCCGCTCCTGTAGCAAGGTTCGAAGTGGTGACCGGT
GCCGCAGGCGGGATGTCTCCGTCCGAACGAGCCTCCCCGACCTCCCCCGC
CGCCGCCGCCACCGGCGCGCCACTGACAAACGACGCGATCACTCCAGCCC
CCGCAGCCGAGCCGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5348:9070..10336+

>mRNA_L-elsbetiae_contig5348.13527.1 ID=mRNA_L-elsbetiae_contig5348.13527.1|Name=mRNA_L-elsbetiae_contig5348.13527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1608bp|location=Sequence derived from alignment at L-elsbetiae_contig5348:9070..10336+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGACGGCTTCCAAGTATGCAGAAGCAGCGCCAGGAGAACAGACGGT
ACCAGCAGCCGAGCCGGAAGATAGAGTCTCGACCTCTTCCACGGCCACCA
CGGCAGGTACACCATCCAGCGCCCCTCCGCAGGACTTTGCGTCTTCGACC
CCTGGATTATCGTCCCCCCCGCCATCTTCTACCGCCCCCGCCATCTCTGC
TGTCGGCGCGACAGCAATCAGCGTTTCCGATTCCAAAAATGCCGTTCCCT
CCTTCGCTGCACTTTGTCCCCCGGCTGTACCGGCCGCCACCGCTGATTCC
TGTTTGATAGCAATTGGGGTTTCCGTCGCAGCAACCCTCGTCGCCGCATC
CCCCGGGCTAACCCCCTCCTCGGCAACTACCGTCGCCGATGTTGCCGGTG
CTCTTGCTTCCGCTTCGAGGGACACCGCCGGGGAATTCACCTCGCCCACC
ACGCACGCGTTCTCGTCTTCGGCCTCCACCCCGTTCCTTCCCACGATGAC
CTCGTCCTCTTCTGCTGCAGTCGCCGCATCACCGGTCTCCTCAGACGGCA
TATCGTCGCTGCCGATCTCCGCCACCAAAACGTCACCCGGCAGAGAAATG
TCGCCCGGCAACCTCCCCACCTTCGGCGATTCCTCCGAAACAACGTCGTT
GGCCGCTCCTGTAGCAAGGTTCGAAGTGGTGACCGGTGCCGCAGGCGGGA
TGTCTCCGTCCGAACGAGCCTCCCCGACCTCCCCCGCCGCCGCCGCCACC
GGCGCGCCACTGACAAACGACGCGATCACTCCAGCCCCCGCAGCCGAGCC
GCTGATGGGGACGGCTTCCAAGTATGCAGAAGCAGCGCCAGGAGAACAGA
CGGTACCAGCAGCCGAGCCGGAAGATAGAGTCTCGACCTCTTCCACGGCC
ACCACGGCAGGTACACCATCCAGCGCCCCTCCGCAGGACTTTGCGTCTTC
GACCCCTGGATTATCGTCCCCCCCGCCATCTTCTACCGCCCCCGCCATCT
CTGCTGTCGGCGCGACAGCAATCAGCGTTTCCGATTCCAAAAATGCCGTT
CCCTCCTTCGCTGCACTTTGTCCCCCGGCTGTACCGGCCGCCACCGCTGA
TTCCTGTTTGATAGCAATTGGGGTTTCCGTCGCAGCAACCCTCGTCGCCG
CATCCCCCGGGCTAACCCCCTCCTCGGCAACTACCGTCGCCGATGTTGCC
GGTGCTCTTGCTTCCGCTTCGAGGGACACCGCCGGGGAATTCACCTCGCC
CACCACGCACGCGTTCTCGTCTTCGGCCTCCACCCCGTTCCTTCCCACGA
TGACCTCGTCCTCTTCTGCTGCAGTCGCCGCATCACCGGTCTCCTCAGAC
GGCATATCGTCGCTGCCGATCTCCGCCACCAAAACGTCACCCGGCAGAGA
AATGTCGCCCGGCAACCTCCCCACCTTCGGCGATTCCTCCGAAACAACGT
CGTTGGCCGCTCCTGTAGCAAGGTTCGAAGTGGTGACCGGTGCCGCAGGC
GGGATGTCTCCGTCCGAACGAGCCTCCCCGACCTCCCCCGCCGCCGCCGC
CACCGGCGCGCCACTGACAAACGACGCGATCACTCCAGCCCCCGCAGCCG
AGCCGCTG
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