mRNA_L-elsbetiae_contig534.13516.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig534.13516.1
Unique NamemRNA_L-elsbetiae_contig534.13516.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig534contigL-elsbetiae_contig534:28064..29501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size533
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.1972256-CDS-L-elsbetiae_contig534:28063..285261622816554.1972256-CDS-L-elsbetiae_contig534:28063..28526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 28064..28526 +
1691683643.488311-CDS-L-elsbetiae_contig534:28063..285261691683643.488311-CDS-L-elsbetiae_contig534:28063..28526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 28064..28526 +
1622816554.2116294-CDS-L-elsbetiae_contig534:29431..294991622816554.2116294-CDS-L-elsbetiae_contig534:29431..29499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 29432..29499 +
1691683643.5014153-CDS-L-elsbetiae_contig534:29431..294991691683643.5014153-CDS-L-elsbetiae_contig534:29431..29499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 29432..29499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig534.13516.1prot_L-elsbetiae_contig534.13516.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig534 28064..29499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig534.13516.1

>prot_L-elsbetiae_contig534.13516.1 ID=prot_L-elsbetiae_contig534.13516.1|Name=mRNA_L-elsbetiae_contig534.13516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
TTNLARLPGLQPQSATRPVLQELRDHEGISDNGNSSSSSGHRASSSLAER
TSARDREHRQRERGRRGQEACLPPRRRLSSTPWWNGGPTTPPPTPPTRGP
REAGTPPGGSPRDRQHHHRQQGEQETWRAGSRQRSPQQHGLEEGWTSGAQ
GRRSATGPTTSHRWGGSAGGQAGGGQR
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mRNA from alignment at L-elsbetiae_contig534:28064..29501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig534.13516.1 ID=mRNA_L-elsbetiae_contig534.13516.1|Name=mRNA_L-elsbetiae_contig534.13516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1438bp|location=Sequence derived from alignment at L-elsbetiae_contig534:28064..29501+ (Laminarionema elsbetiae ELsaHSoW15)
ACAACGAACCTCGCCAGGCTTCCAGGCCTTCAGCCGCAGTCGGCGACTAG
ACCTGTGCTGCAGGAGTTGCGTGATCATGAGGGCATCAGCGACAACGGCA
ACAGCAGCAGCAGCAGCGGTCATCGCGCGAGCAGCAGCTTGGCTGAGCGG
ACCTCAGCACGAGACCGAGAGCATCGGCAGCGGGAACGGGGGAGGCGAGG
GCAGGAAGCTTGCTTGCCGCCACGGCGCCGGCTCTCTTCCACGCCTTGGT
GGAACGGTGGCCCTACCACCCCCCCGCCTACACCGCCTACGCGCGGGCCT
CGAGAGGCGGGGACACCACCTGGCGGCTCTCCGCGGGACAGGCAACACCA
CCACCGACAGCAAGGAGAGCAGGAGACGTGGCGAGCTGGCAGCAGACAAC
GGAGCCCCCAACAGCACGGCCTGGAAGAAGGGTGGACATCAGGAGCACAG
GGGCGCAGGAGCGGTAGGGATTTTTCTGCTGAGTGGCTACATAGATTTAG
AAACGACTTTTTCGCACACTGGACGTCGATGCTGCATTTTGAAAGATAAG
CAGATAATCAAGAATGCATTAAAAGGTGTGACGGGTGACAGTCCAGTAGT
TCGTTGTGCAGCGACGGGTACTGACTGCACAGCGGCCGGCAGACTGGCTA
GAGACCCGGACCTTGCCCGGCGAGACCGAGGCCCACTCGACGAAAACCCG
GTGGCCTCTGCACCACAGCGGCGTCTTTTTTTGTTCGGCGTTCCTGGGCT
GTTTCTGGTATATTTTGTCCGTGGCGTCAGACCTTTCTGCCGCTGCCTCA
AAAAAGCAGCACGGAGGCGGCCGCCCCCCCCCCGTCTACATACAATATAA
CATGACCTTCTTGTTTTATCTCCTCTTAGCGTTTATTTCCAGCGTGTGCT
GCTCGATGGGCTCCTTGTCACGAGGCACGCATCTTGCCAGAGGTACTGAA
TCGTGGTCACACAGAAGGGTTCCTTTCCCTGAGGCCGAGAACAGGGCAGG
CCACAAAAAAAATCTCGGCTGCTTTGATTTGACGCACTACTGTTCGGCGC
TTTCGACGACACACGTGTGTTTTGAGCTTTGCTATGTTGTGCGCAGTGTA
TTATCTGTGTCGCCGGTTGTGCGGCGGCTTCTACCCGTCGCTTGCGAGGT
GTCCTGTCTTGGATCTTTATCGGCGTGCCTCTCTTGCTGCTGCTGTTCCC
ACGATGGTGTGTGCTGTTCCGAGGTGTCTTCATCGGCGTCCTTACTGCTG
CTGTCCCCCCCATCGTGAACAGAGCGCTGTGATCCGATTGATCTCAAGCA
TGAACCCAACCCGACTCGATCGGTTACATCGCAACCCTTGCCGTCGCTGC
TGCTGCTGCTGGCTGCAGCAACTGGCCCAACCACGTCGCACCGCTGGGGT
GGCAGTGCCGGCGGGCAGGCAGGGGGAGGTCAGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig534:28064..29501+

>mRNA_L-elsbetiae_contig534.13516.1 ID=mRNA_L-elsbetiae_contig534.13516.1|Name=mRNA_L-elsbetiae_contig534.13516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig534:28064..29501+ (Laminarionema elsbetiae ELsaHSoW15)
ACAACGAACCTCGCCAGGCTTCCAGGCCTTCAGCCGCAGTCGGCGACTAG
ACCTGTGCTGCAGGAGTTGCGTGATCATGAGGGCATCAGCGACAACGGCA
ACAGCAGCAGCAGCAGCGGTCATCGCGCGAGCAGCAGCTTGGCTGAGCGG
ACCTCAGCACGAGACCGAGAGCATCGGCAGCGGGAACGGGGGAGGCGAGG
GCAGGAAGCTTGCTTGCCGCCACGGCGCCGGCTCTCTTCCACGCCTTGGT
GGAACGGTGGCCCTACCACCCCCCCGCCTACACCGCCTACGCGCGGGCCT
CGAGAGGCGGGGACACCACCTGGCGGCTCTCCGCGGGACAGGCAACACCA
CCACCGACAGCAAGGAGAGCAGGAGACGTGGCGAGCTGGCAGCAGACAAC
GGAGCCCCCAACAGCACGGCCTGGAAGAAGGGTGGACATCAGGAGCACAG
GGGCGCAGGAGCGACAACGAACCTCGCCAGGCTTCCAGGCCTTCAGCCGC
AGTCGGCGACTAGACCTGTGCTGCAGGAGTTGCGTGATCATGAGGGCATC
AGCGACAACGGCAACAGCAGCAGCAGCAGCGGTCATCGCGCGAGCAGCAG
CTTGGCTGAGCGGACCTCAGCACGAGACCGAGAGCATCGGCAGCGGGAAC
GGGGGAGGCGAGGGCAGGAAGCTTGCTTGCCGCCACGGCGCCGGCTCTCT
TCCACGCCTTGGTGGAACGGTGGCCCTACCACCCCCCCGCCTACACCGCC
TACGCGCGGGCCTCGAGAGGCGGGGACACCACCTGGCGGCTCTCCGCGGG
ACAGGCAACACCACCACCGACAGCAAGGAGAGCAGGAGACGTGGCGAGCT
GGCAGCAGACAACGGAGCCCCCAACAGCACGGCCTGGAAGAAGGGTGGAC
ATCAGGAGCACAGGGGCGCAGGAGCGCAACTGGCCCAACCACGTCGCACC
GCTGGGGTGGCAGTGCCGGCGGGCAGGCAGGGGGAGGTCAGCGGCAACTG
GCCCAACCACGTCGCACCGCTGGGGTGGCAGTGCCGGCGGGCAGGCAGGG
GGAGGTCAGCGG
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