mRNA_L-elsbetiae_contig5326.13490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5326.13490.1
Unique NamemRNA_L-elsbetiae_contig5326.13490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5326.13490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5326contigL-elsbetiae_contig5326:7384..10691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size417
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5326.13490.1prot_L-elsbetiae_contig5326.13490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5326 7384..10690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.154037-CDS-L-elsbetiae_contig5326:7383..74121622816552.154037-CDS-L-elsbetiae_contig5326:7383..7412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 7384..7412 +
1691683642.0210955-CDS-L-elsbetiae_contig5326:7383..74121691683642.0210955-CDS-L-elsbetiae_contig5326:7383..7412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 7384..7412 +
1622816552.1736784-CDS-L-elsbetiae_contig5326:7964..80641622816552.1736784-CDS-L-elsbetiae_contig5326:7964..8064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 7965..8064 +
1691683642.0303159-CDS-L-elsbetiae_contig5326:7964..80641691683642.0303159-CDS-L-elsbetiae_contig5326:7964..8064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 7965..8064 +
1622816552.1878147-CDS-L-elsbetiae_contig5326:8573..86631622816552.1878147-CDS-L-elsbetiae_contig5326:8573..8663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 8574..8663 +
1691683642.0389078-CDS-L-elsbetiae_contig5326:8573..86631691683642.0389078-CDS-L-elsbetiae_contig5326:8573..8663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 8574..8663 +
1622816552.1986203-CDS-L-elsbetiae_contig5326:9268..93371622816552.1986203-CDS-L-elsbetiae_contig5326:9268..9337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 9269..9337 +
1691683642.0475914-CDS-L-elsbetiae_contig5326:9268..93371691683642.0475914-CDS-L-elsbetiae_contig5326:9268..9337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 9269..9337 +
1622816552.2129986-CDS-L-elsbetiae_contig5326:9945..100411622816552.2129986-CDS-L-elsbetiae_contig5326:9945..10041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 9946..10041 +
1691683642.0582285-CDS-L-elsbetiae_contig5326:9945..100411691683642.0582285-CDS-L-elsbetiae_contig5326:9945..10041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 9946..10041 +
1622816552.2235656-CDS-L-elsbetiae_contig5326:10660..106901622816552.2235656-CDS-L-elsbetiae_contig5326:10660..10690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 10661..10690 +
1691683642.0665312-CDS-L-elsbetiae_contig5326:10660..106901691683642.0665312-CDS-L-elsbetiae_contig5326:10660..10690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 10661..10690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5326.13490.1

>prot_L-elsbetiae_contig5326.13490.1 ID=prot_L-elsbetiae_contig5326.13490.1|Name=mRNA_L-elsbetiae_contig5326.13490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
EEAAKREEERRAMKEQQAKVTAALIRAQQEKAEERNRIMAEREARVQAQL
AEKKAAKAAEVAAQRASAEQRIQEVMEKNKKIQQDKKIAYDLKVAEVARR
KAERAEEEEALAKKKAEDQSKQESVRAKRLEASYQDRA
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mRNA from alignment at L-elsbetiae_contig5326:7384..10691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5326.13490.1 ID=mRNA_L-elsbetiae_contig5326.13490.1|Name=mRNA_L-elsbetiae_contig5326.13490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3308bp|location=Sequence derived from alignment at L-elsbetiae_contig5326:7384..10691+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGCCGCAAAACGAGAGGAGGAACGGTGAGATATTATGTTTCGGGG
GTATTCTTTGGACTCTCTGTGCCCCGTGTCGATGTTATTGATGGGAGATG
TTGAGGCTCAAAACCGCTCGAAAAGCTAAAACAATCGTGCGTCACTCAGA
TCTCGAGAGCACCCAGAAAAAAGCTCCGGAATTTTCGCAAAGAAAAATAT
TGTGACTAGAAGGTACGGGGATTTATTTGTGCGTAATATTTAGGATGTTC
ACGTGGCTTCGTGTCAGCGCAATCTTTGTCAACGTGCTGTGTAGTATCTG
GATCCACGTTGTTCGTCGAGATAGAGGTGGGGGAGTTGTGTGCATTGATG
TATGTATGTATGCCTTTCACGGCGAAACGTGGAGCTCCACCACTAACTCA
AACTGCGCAATTGGAATCGCATCAGAACGACCGTGATCTCGAGGGAAAAA
AAGGCCAAACGACGCTTTTTCGCTCCTATTTAGCAATGGCGACCCCGTGC
GGGATCAATGCATTAGCGCTTAGCACGGATCTGTTACCGTCCTTGTCCCG
GCATAAACCCACGCCCCCGCTCCGCTCGCAGACGCGCCATGAAAGAGCAA
CAGGCTAAGGTCACGGCCGCGCTTATCCGGGCGCAGCAGGAGAAAGCAGA
GGAGAGGAACAGGATCATGGCCGAGCGGGAGGTGATTTACGTGTTTTGCG
CGCGCGCATAAGAGGAAGAGGGGGGCAGGCACGAAAACGCGTGTACTATA
ACTATTTACGCACGAAATAGTCTTCGTAGGGTTTTCATCTTTTCATCTTT
TCATCTTCAGCTAACATATGAGATAAAGTATGGAAACCGGCAAAGGAGGG
TCGGTGGTTGGGGTTAGGGTTAGGGTTAGGGTTATAGGGTTATGTTCCTA
GATACACTTTATTTCCGGCGTAGGCGGTCCCAGTACATACAGGGCGAGGG
TTCTAAATGCTGGGCACGAGGGTAGAGGTGTTCGTTCCATTTTAGTTCGG
GCGTTCTTCCTTCCTTCGCCGCGGACCGAACCAAGGGCATCAACATCTCG
GCTTGTAGTTGGGGTGATTTTGATCGATCTCGAGCGTTGTGTGCGTTTTT
CGGCGGTTTACAGGCGCCCCCTTTTCCCCCTTTTCTCTCAACTTTCGTGG
CCCATACCCTACCATGCCGTTCGGCCGCCGCCGATGGCAGGCTCGAGTGC
AGGCGCAGCTTGCTGAGAAGAAAGCGGCTAAGGCAGCCGAGGTCGCCGCG
CAGAGGGCCTCTGCCGAGCAGCGTATCCAGGTGCGTCATACGCAAGCCAT
TGGCGCAACTAAAAAGGGTCTCATTAATTACAGTCTTTAATCTTGCGCGT
GCTGAATGTTAGATAAAACATCCGGCAGAGCGCGTGATCCACGCGCTTCG
GCCGGCGCGGCATGACACCACCGGGGTCTGGGAGTTGTGTTGATCGAGTG
AAGTTGATGTGTGTTCTGGCGTCGCTGTTTGATAATAGTTTTTGCCAAAG
CGTTGAACGCAGATGACTGCAAGTTTTTTTTTCTCTCAACGTGCGTGCGG
TGTACCCCCACGGAATGAGGAGGAAGATAAAGATCACCAACACCCTCAAC
AGCCTGTGCGTCGGTTTGTGCATACCTTCCGGTTGCCAAAATCCCACACG
CTGAAGCGCTCACCCACAAACAAACCCAAGACGGGCCCCCTTGCGAGGGG
AAGGTTCGGCGCTCGCGAGCTACTACAGAGCACGAGCGGAAAAGGGTTTT
CTGTCCCATACGGGAAGCGGGAATAAACAAAGGGAACTTTCTCGCCACCA
TTGGCTGATTTTTGAGCTTTTCTGAGCGTATTTAGGCTCTCATCTTTGGT
GGCGTTGCCGCTTTCGCTGCCTTGCCGCCGCTCAGGAGGTGATGGAGAAG
AACAAGAAGATTCAGCAGGACAAGAAGATTGCCTACGACTTGAAGGTTGC
CGAGGTAAGAAGCGGACATTGGGAGCCAAACTTCCGGCAAAGACTAGACA
TACATCTGTATGCGCACCAATTCCGATTGAGAGAGCTTGGCTACTTCTCT
TGGCTGCGATTTTTATTCCCGCCCTGCTCTCATGTCGAGCGCACCACCTG
CGCGGAAGCCGAAGGAGCAAAACAAAGCCGGTTTTGGTTTAGGTTTTGTT
TTTTTGCGATTTTGTTTTTGTACGCTGCCTCTCGAAGCGGTGATTGTTTG
TTTCTGGCTTCGACGTGGTTGAACGGGCGACTTAATTGAGGTGGGCTTTT
CCATCCCGCCAAGGGTGAGTTACCGTAGAAAAGGGCGGCGGGTCAAGCTC
CAAAAGGCAGGTGTAGCGGGTTGGCTCACTGAGGGGGTCAGCTAGAGAAC
GGCGCGCGCACCGTCGACCTTCTGCCAAGAGGGCAAAAACAAGGGCATCT
TGCCCGTAAATTTTCGTATGGGTTCGTTTTGCATCGCGTATCACACACGG
CATTACTGACATCGACGTGTCTCTGCCTCTTCTGCTTTGTCGATGATCTC
ACTTCGTGATGGGCTTGTTTTTTCTTGCCGCCTTCGTGTATGTATCTATC
TGCTGGAATTAGGTTGCCAGACGCAAGGCGGAGAGGGCGGAAGAGGAAGA
AGCCCTCGCGAAGAAAAAGGCCGAGGACCAGAGCAAACAAGAAAGCGTTC
GCGCCAAGGTGGGGGAGAGGAGAGACATTGAGCCCCATGGAATGCCCTAC
TAGACTACTGCCTGTACGTCCGTAACCCATGTGATCGGTGTTCGTGTGCA
TACATAAACTTCCACCCAAACGATCCGCAGCGTTACTTCCAGTACTTGCT
GGGTATCGGTGTTATATCGGCAAACTCTCCTTGCAACAACAGGCATTGAT
TGCCCTTGGACAAGGGCTTCTTGGTTGCCACGTCTTGCTGTCCCCTCCGT
GGGTTCAAAACGCTATAACCGCAGAGCGATATCCGAGATGAGGCCACCGC
CCACAATGGAGCAAACCAGCTTCTTTTCAGCCAAATCTCTGAAAATGGCG
TGTGTGTCTACATAGGTTCTTTGACACACTCCATTCCTTAATCAAGCGCG
CCCTAAAAGATGCAAGGTAATTAAAGAGGATGCACGCTTATCTAGGTAAC
TTTGTGTTTCCTACTTGATGGCACACATGGCTTGATGCGTCAGCTTGCTC
TAGTGGCCTGCTTGTTCGGTAAGGCCGGTCGTGGGCTGTTCCTCGGCGTG
CTGTGATTTCACCCTACGTGCTTTCATGACATACGTATCTACATACCTAT
TTTACGAAATCTGTTTTCGGTACACAGAGGCTGGAGGCTAGCTACCAGGA
CCGCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5326:7384..10691+

>mRNA_L-elsbetiae_contig5326.13490.1 ID=mRNA_L-elsbetiae_contig5326.13490.1|Name=mRNA_L-elsbetiae_contig5326.13490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig5326:7384..10691+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGCCGCAAAACGAGAGGAGGAACGGAGGAAGCCGCAAAACGAGAG
GAGGAACGACGCGCCATGAAAGAGCAACAGGCTAAGGTCACGGCCGCGCT
TATCCGGGCGCAGCAGGAGAAAGCAGAGGAGAGGAACAGGATCATGGCCG
AGCGGGAGACGCGCCATGAAAGAGCAACAGGCTAAGGTCACGGCCGCGCT
TATCCGGGCGCAGCAGGAGAAAGCAGAGGAGAGGAACAGGATCATGGCCG
AGCGGGAGGCTCGAGTGCAGGCGCAGCTTGCTGAGAAGAAAGCGGCTAAG
GCAGCCGAGGTCGCCGCGCAGAGGGCCTCTGCCGAGCAGCGTATCCAGGC
TCGAGTGCAGGCGCAGCTTGCTGAGAAGAAAGCGGCTAAGGCAGCCGAGG
TCGCCGCGCAGAGGGCCTCTGCCGAGCAGCGTATCCAGGAGGTGATGGAG
AAGAACAAGAAGATTCAGCAGGACAAGAAGATTGCCTACGACTTGAAGGT
TGCCGAGGAGGTGATGGAGAAGAACAAGAAGATTCAGCAGGACAAGAAGA
TTGCCTACGACTTGAAGGTTGCCGAGGTTGCCAGACGCAAGGCGGAGAGG
GCGGAAGAGGAAGAAGCCCTCGCGAAGAAAAAGGCCGAGGACCAGAGCAA
ACAAGAAAGCGTTCGCGCCAAGGTTGCCAGACGCAAGGCGGAGAGGGCGG
AAGAGGAAGAAGCCCTCGCGAAGAAAAAGGCCGAGGACCAGAGCAAACAA
GAAAGCGTTCGCGCCAAGAGGCTGGAGGCTAGCTACCAGGACCGCGCCAG
GCTGGAGGCTAGCTACCAGGACCGCGCC
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