mRNA_L-elsbetiae_contig5315.13482.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: D7FZ34_ECTSI (Carnitine/acylcarnitine translocase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ34_ECTSI) HSP 1 Score: 388 bits (996), Expect = 1.090e-129 Identity = 223/297 (75.08%), Postives = 241/297 (81.14%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGG-MRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYEVAAKQFRAML 888 QPLDSVLVRVQAG+A+G SSSL A+ L SSGG R+ W+GA PM+ SVPAQNALLFAGYGAGLGWCS G Q A SLWHVFAGGCAGGFAQSF+MSPVELVKVRLQL D V L+ AA XXXXXXXXX LATGVVR+ GLSGLLS GLGATMGRDVLPHGVWFA+YEWCKQEFS REGVK DNGALSV AQLASGG+AAT AWLVGYPFDVIKTR+Q A + K+P GV+ATA+ MA+VDG GVFY+GFGLKL RAVPMSMIGFFAYEVAAKQ R ML Sbjct: 23 QPLDSVLVRVQAGTAAG-----SSSLPAAIRDLLSSGGGARSLWKGAAPMMWSVPAQNALLFAGYGAGLGWCSGGRRQDGAPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLEDRVVLSAAAXXXXXXXXXXFA---------LATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVAAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMG--KVPGGVVATAQHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAKQLRDML 303
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A836CMX5_9STRA (Carnitine/acylcarnitine translocase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX5_9STRA) HSP 1 Score: 194 bits (493), Expect = 3.410e-54 Identity = 153/313 (48.88%), Postives = 184/313 (58.79%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQ-QSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGV--------------VRSVGLSGLL--SRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLA-TARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYEVAAKQFRAM 885 QPLD +LVR QA +A + + S +S+GG++A W+G M+ +VPAQNALLFAGYGAGL W +G S LWHVF GGCAGG AQSF+ SPVEL+KVRL XXXXXXXXXXXXXXXXXXXX RS L + +GL AT+ RDVLPHGVWFA+YE K+ + + G L AQ+A+G AAT AW VGYP DV+KTR+Q A SG A T +M A +G VF++G GLKL RA+PMS IGFFAYE A RA+ Sbjct: 26 QPLDCILVRRQANAAPARQALAHS--------FSSAGGLKALWKGTSIMMGTVPAQNALLFAGYGAGLHWSGADKGDGTSEGGQLWHVFVGGCAGGLAQSFLASPVELLKVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSFALPSVAWAGQGLSATLWRDVLPHGVWFASYEAAKRALA-----GDAAAGPLDPAAQVAAGATAATAAWCVGYPADVVKTRMQ------AHGASGSFAETVARMHAAEGVRVFWRGLGLKLARAIPMSAIGFFAYEEVAAYLRAL 319
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A7S0I9L0_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I9L0_MICPS) HSP 1 Score: 192 bits (487), Expect = 1.600e-53 Identity = 131/304 (43.09%), Postives = 164/304 (53.95%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASP----SLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEF---SLREGVKPSDNGALS-VGAQLASGGVAATIAWLVGYPFDVIKTRVQG--AR-VADAKLPSGVLATARQMAAVDGAGV---FYKGFGLKLGRAVPMSMIGFFAYEVAAK 870 QPLD+ L R+QA + + S S A+ + + GG RA WRGA PM +PAQNALLFAGYG G W SRG AS SL VF GG GG QSF++SP ELVK+R Q A G A +T + ++G +GL +RGLGAT+ RD +PHG WFA YEW K+ +G+ + +G L+ L +G AA +AW VGYP D++KTRVQ AR A A L G+ T M G V FY+GF LKL RAVP S + FFAYE A + Sbjct: 24 QPLDTTLTRMQA---TRLAPGVDGSASAALRVVLAEGGARALWRGAAPMTAVIPAQNALLFAGYGVGERWASRGGSSSDASSKTSSSLLPVFCGGVVGGVLQSFVVSPFELVKIRQQSAGGTATLAVST------------------------LAGTLGRAGLATRGLGATLLRDGVPHGAWFAAYEWSKRRMIRDDENDGLSATTSGGLTDAWVPLCAGAFAAAVAWGVGYPADLVKTRVQAHAARSAAAATLAPGLAETCAAMLRESGGDVLRAFYRGFDLKLLRAVPASAVSFFAYEEARR 300
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A8J5XL04_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XL04_DIALT) HSP 1 Score: 179 bits (453), Expect = 1.690e-48 Identity = 127/312 (40.71%), Postives = 161/312 (51.60%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAG-----------------LGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLAD----GVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGA---GVFYKGFGLKLGRAVPMSMIGFFAYEVA 864 QPLD+VL R+Q + ++ S A++ L GG+RA WRGA P+ VP QNALLFAGYG G P L +F GGCAGG Q F++SPVELVKV LQ + G L A+ V ++G+ + RGL AT+ RD LPHGVWFA+YEW K+E + R+ D + A L+ G AAT+AW VGYP D++KTR+Q A PS VLA AR++ A G FY+GFGLKL RAVPM+ + FFAYE A Sbjct: 26 QPLDTVLTRLQ------QAPPAARPASLALQ-LRRDGGLRALWRGASPLAWVVPVQNALLFAGYGMGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLAPIFVGGCAGGVLQCFVVSPVELVKVHLQSSSPKEAGAGLLAGASK-----------------------VYATIGVPAIW-RGLSATLLRDGLPHGVWFASYEWGKRELAARD----PDRVLPTAAAPLSCGAFAATVAWAVGYPADIVKTRIQSPAHAGRDAPS-VLAAARELLAESGGRPFAAFYRGFGLKLARAVPMNALSFFAYERA 301
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: B7GCN7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCN7_PHATC) HSP 1 Score: 175 bits (444), Expect = 2.000e-47 Identity = 126/299 (42.14%), Postives = 159/299 (53.18%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSASGTSSKSSSSLS------TAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGV--FYKGFGLKLGRAVPMSMIGFFAYEVAAKQ 873 QP+D+VL R+QAG+ S + ++ + TA L S G +A WRGA PM+ +VP QNALL GYG G + + G ++ L +F GGC GG QSF+MSPVEL+KV Q+ G L A G V + RGL AT+ RD +PHGVWFATYE K L E + G SV LASG +AAT AW VGYP D+IKTR+Q A + G++ TAR + AGV Y+GFGLKL R++P SMIGF YE KQ Sbjct: 25 QPVDTVLTRLQAGTVSSLVTGTTRAXXXXXXXRTATLDLTQSAGFQALWRGASPMITAVPLQNALLMGGYGVGQAYSA---GNLDSADRLAAIFVGGCTGGILQSFLMSPVELIKVSQQVR-GTPLRDAG------------------------GAVLTHWAQPAAWRGLYATLLRDGIPHGVWFATYEVAKD--GLEETL-----GKDSVSVPLASGALAATAAWAVGYPADLIKTRIQAAGPTE---NHGIVETARAIMNEGNAGVAGLYRGFGLKLVRSIPASMIGFTVYEFVKKQ 285
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A6U8KEQ0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6U8KEQ0_EMIHU) HSP 1 Score: 175 bits (443), Expect = 4.690e-47 Identity = 118/261 (45.21%), Postives = 144/261 (55.17%), Query Frame = 1 Query: 121 AFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSG-------LLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGA--------LSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYE 858 A WRG GP+L P NAL+F GYG+G + G+ SL VF GGC GGFAQSF+ SPVEL+KVRLQLA+ XXXXXXX A +V+ + +G LLS+GL AT+ RDV+PHGVWFA+YE K + + S LS G QLA+G AA AW VGYPFD++KTR Q + ++ G LA RQ+ G Y GFGLK+ RAVPMS IGF YE Sbjct: 59 AAWRGVGPLLLGTPFNNALIFVGYGSGKRFSETGD---ETPNSLLPVFIGGCVGGFAQSFLASPVELIKVRLQLAE-----------------PGGXXXXXXXLAAAGALVKELAAAGHSHTLPPLLSQGLAATIARDVVPHGVWFASYEVAKTALAPPRPIAASAEAPDPQAPDPPLSTGRQLAAGASAAVAAWAVGYPFDIVKTRCQASSSSE-----GFLAATRQLWREGGVAAMYSGFGLKMCRAVPMSAIGFLVYE 294
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A448ZGK2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK2_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.200e-46 Identity = 126/317 (39.75%), Postives = 166/317 (52.37%), Query Frame = 1 Query: 1 QPLDSVLVRVQAG---SASGTS-----SKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQS-ASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQL-ADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEF------SLREGVKPSDNGA---------LSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGVF---YKGFGLKLGRAVPMSMIGFFAYEVAA 867 QPLD+VL R QAG SA G ++S++ ++V GL G+R+ WRG+ PM+ +VP QNALL GYG G + G + A +L VF GGCAGG QSF+MSPVE +KV+ Q A A TA++ L +RGL AT+ RD +PHGVWFATYE+CK + G + GA +V + SG VAAT AW VGYPFD+IKTR+Q A ++P GV T ++ + Y+GFGLKL R+VP SM+GFF YE+ + Sbjct: 27 QPLDTVLTRFQAGRVLSAPGLEVAVQGGVTASAVRSSVRGLVGEFGLRSLWRGSSPMIGAVPVQNALLMGGYGFGKRYSEGARGADTGACDALLPVFVGGCAGGVLQSFLMSPVEWIKVQQQTHASSGAAATASSVSVLRRFLTHRHA--------------------LWNRGLTATLLRDGIPHGVWFATYEFCKLRMLAGPAEAASGGTETPGAGAEDGPRSSLYKTVAVPVVSGAVAATTAWAVGYPFDIIKTRIQ-ASADGVRVPPGVWETGIKLVEEANGNLLRGLYRGFGLKLLRSVPASMVGFFTYELVS 322
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: C1E524_MICCC (Mitochondrial carrier family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E524_MICCC) HSP 1 Score: 172 bits (435), Expect = 7.340e-46 Identity = 123/312 (39.42%), Postives = 155/312 (49.68%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASP------SLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEF--SLREGVKPSDNGALSVGAQ--LASGGVAATIAWLVGYPFDVIKTRVQ---------GARVADAKLPSGVLATARQMAAVDGAGV---FYKGFGLKLGRAVPMSMIGFFAYEVAAK 870 QP+D+ L R+QA + + S A+ + + GG RA WRGA PM +PAQNALLFAGYG G W SR + +P SL VF GG GG QSF++SP ELVK+R Q A G +T + ++G GL +RGLGAT+ RD +PHGVWFA YEW K+ + R+ A L +G AA +AW VGYP D++KTRVQ G P G+ T M G V FY+GF LKL RAVP S + FFAYE A + Sbjct: 24 QPVDTTLTRMQA---TRLAPGVDGSARAALRVVLAEGGARALWRGAAPMTAVIPAQNALLFAGYGVGERWASRRDKDSGGNPDGSSRESLLPVFCGGVVGGVLQSFVVSPFELVKIRQQAAGGAVTLAVST------------------------LAGNLGRVGLCTRGLGATLLRDGVPHGVWFAAYEWSKRRMVQASRDXXXXXXXXXRRTDAAVPLCAGAFAAAVAWGVGYPADLVKTRVQAQAAXXXXXGGATMMRSAP-GLAETCAAMLRESGGDVLRAFYRGFDLKLLRAVPASAVSFFAYEEARR 307
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A0M0K9X8_9EUKA (Solute carrier family 25 member 45 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K9X8_9EUKA) HSP 1 Score: 170 bits (431), Expect = 1.550e-45 Identity = 125/301 (41.53%), Postives = 156/301 (51.83%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVG---------AQLASGGVAATIAWLVGYPFDVIKTRVQ----GARVADAKLPSGVLATARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYEVA 864 QP+D +L ++Q+G+ + + + G+ + WRG+ M +VP NA+L GYGAG + G S+ VF GGC GGF QSF+ SPVEL+KVRLQLA G + T +T A V L LL +GL AT+ RDV+PHGVWFA YE+ K+ F R S+ L VG AQL+SG AA AW+VGYP DVIKTR Q A VA+A AR + A G FY G GLKL RAVPMS +GFFAYE A Sbjct: 20 QPIDFLLTKLQSGATAQVNKPPN--------------GLLSMWRGSALMFATVPLNNAMLMYGYGAG-----KRVGDAYGGESILPVFIGGCTGGFMQSFLQSPVELLKVRLQLAMGKEVPTVSTLTRELLRPSPRG---------AAAVAPP--LPPLLHKGLYATLLRDVVPHGVWFAAYEYSKKHFERRA----SEAAGLPVGGTPPPLSTVAQLSSGAFAAIAAWVVGYPADVIKTRCQMEGGQASVAEA---------ARAIYAEGGLRAFYNGLGLKLLRAVPMSAVGFFAYEYA 277
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A7S3P6R2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6R2_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.940e-45 Identity = 124/304 (40.79%), Postives = 160/304 (52.63%), Query Frame = 1 Query: 1 QPLDSVLVRVQAGSAS---------GTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQ--EFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPS----GVLATARQMAAVDGAGVF---YKGFGLKLGRAVPMSMIGFFAYE 858 QP+D+VL R QAG + S ++T + L + G++A WRGA PML +VPAQNALL GYG G + + + VF GGC GG QSF+MSPVELVKV Q A G A T T + +S+ S L RGLGAT+ RD +PHGVWF YE K +++L +P+D+ V L +G AAT AW VGYP DVIKTR+Q A A + PS G++AT + + V+ Y+GFGLKL R++P SMIGF YE Sbjct: 25 QPVDTVLTRWQAGLIATXXXXXXXXXXXXXXSHVVATTMRHLTQTAGLKALWRGASPMLTAVPAQNALLMGGYGVGQAYSVAHAPEYRRTA----VFVGGCTGGVLQSFLMSPVELVKVAQQCAAGEASATTTTLTTTRQI-----------------LTQSLQSSTFLWRGLGATLLRDGIPHGVWFVAYEEGKTGLQYALH---RPADD---PVVVPLLAGAGAATAAWAVGYPADVIKTRIQAAAAASSTAPSSASLGIIATGKVLIEEANGNVWRGLYRGFGLKLVRSIPASMIGFGVYE 301 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5315.13482.1 >prot_L-elsbetiae_contig5315.13482.1 ID=prot_L-elsbetiae_contig5315.13482.1|Name=mRNA_L-elsbetiae_contig5315.13482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp MRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFback to top mRNA from alignment at L-elsbetiae_contig5315:1858..4002+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5315.13482.1 ID=mRNA_L-elsbetiae_contig5315.13482.1|Name=mRNA_L-elsbetiae_contig5315.13482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2145bp|location=Sequence derived from alignment at L-elsbetiae_contig5315:1858..4002+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5315:1858..4002+ >mRNA_L-elsbetiae_contig5315.13482.1 ID=mRNA_L-elsbetiae_contig5315.13482.1|Name=mRNA_L-elsbetiae_contig5315.13482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig5315:1858..4002+ (Laminarionema elsbetiae ELsaHSoW15)back to top |