mRNA_L-elsbetiae_contig5313.13479.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5313.13479.1
Unique NamemRNA_L-elsbetiae_contig5313.13479.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: D7FRI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 9.110e-36
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1
Query:  100 VAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAMVS 309
            V G+PTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA+ S
Sbjct:  490 VVGTPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAVAS 559          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A6H5L1B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B8_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.880e-35
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1
Query:  100 VAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAMVS 309
            V G+PTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA+ S
Sbjct:  859 VVGTPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAVAS 928          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7S2UUK7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUK7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.530e-28
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   94 PPVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300
            PP+ G+P+FC +VKNMFDPATET EGWELDIKE++EEECS+ G V+HSYVE+RQPGG VY++F+   AA
Sbjct:    6 PPIGGTPSFCFVVKNMFDPATETAEGWELDIKEDVEEECSRFGTVLHSYVETRQPGGFVYLLFARVEAA 74          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7S3YAZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAZ4_HETAK)

HSP 1 Score: 108 bits (271), Expect = 1.820e-28
Identity = 46/69 (66.67%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   94 PPVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300
            P  AGSP+FC L++NMFDP+TET++GW+LD+KE++EEECSK+G V+HSYVE+++PGGLVY++FST  AA
Sbjct:   13 PXXAGSPSFCFLIRNMFDPSTETEDGWDLDVKEDVEEECSKYGPVLHSYVEAQRPGGLVYLLFSTVAAA 81          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7S2MMP2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MMP2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.880e-26
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   97 PVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAM 303
            PVAG PTFC L++NMFDPATET+EGW+ DIKE++E ECSK G ++HSYVE+RQPGGLVY++FST  +AM
Sbjct:  431 PVAGMPTFCFLIRNMFDPATETEEGWDSDIKEDVEGECSKFGTLLHSYVETRQPGGLVYLLFSTVDSAM 499          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A835ZMX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMX7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.280e-20
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   91 VPPVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300
            VPP+ G+ +FC+L+KNM++ A ET++GWELDIKE+ E ECSK+G V+HSYV++  PGG V++MF    AA
Sbjct:  345 VPPIGGTRSFCILIKNMYNAAEETEDGWELDIKEDTEAECSKYGPVLHSYVDAASPGGCVFIMFRHASAA 414          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A834D8H5_JUGRE (RRM domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A834D8H5_JUGRE)

HSP 1 Score: 79.0 bits (193), Expect = 2.270e-16
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAMVS 309
            G+P+ CLL+KNMFDPATET+  +++DIKE++EEECSK+G V H YV+ +   G VY+ F T  AAM +
Sbjct:   61 GTPSECLLLKNMFDPATETEPDFDMDIKEDVEEECSKYGRVRHIYVD-KNSAGFVYLRFETVEAAMAA 127          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A394D8W7_LUPAN (Uncharacterized protein n=10 Tax=Lupinus TaxID=3869 RepID=A0A394D8W7_LUPAN)

HSP 1 Score: 81.3 bits (199), Expect = 9.270e-16
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300
            G+PT CLL+KNMFDP TET+  ++LDIKE++EEECSKHG V H YV+ R   G VY+ F T  AA
Sbjct:  508 GNPTECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKHGRVKHIYVDKRS-AGFVYLRFETVEAA 571          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A2N9HRN1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HRN1_FAGSY)

HSP 1 Score: 80.9 bits (198), Expect = 1.260e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAM 303
            G+PT CLL+KNMFDPATETD  +++DIKE++EEECSK+G V H YV+ R   G VY+ F T   AM
Sbjct:  494 GNPTECLLLKNMFDPATETDPEFDMDIKEDVEEECSKYGRVKHIYVD-RNSAGCVYLRFETVDGAM 558          
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7J9IFK9_9ROSI (RRM domain-containing protein n=2 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9IFK9_9ROSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.060e-15
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300
            G P+ CLL+KNMFDPATET+  ++LDIKE++EEECSK+G V H YV+ +  GG VY+ F +T AA
Sbjct:  222 GQPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHIYVD-KNSGGCVYLRFDSTEAA 285          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRI3_ECTSI9.110e-3694.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1B8_9PHAE1.880e-3594.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UUK7_9STRA1.530e-2869.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YAZ4_HETAK1.820e-2866.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MMP2_9STRA3.880e-2671.01Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZMX7_9STRA3.280e-2057.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A834D8H5_JUGRE2.270e-1655.88RRM domain-containing protein n=1 Tax=Juglans regi... [more]
A0A394D8W7_LUPAN9.270e-1661.54Uncharacterized protein n=10 Tax=Lupinus TaxID=386... [more]
A0A2N9HRN1_FAGSY1.260e-1560.61Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A7J9IFK9_9ROSI2.060e-1560.00RRM domain-containing protein n=2 Tax=Gossypium ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5313contigL-elsbetiae_contig5313:9528..10387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog2880.D7FRI3
KEGG koko:K13091
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA processing
EggNOG OGsKOG0147@1,KOG0147@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons2
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816551.1879125-CDS-L-elsbetiae_contig5313:9527..96351622816551.1879125-CDS-L-elsbetiae_contig5313:9527..9635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5313 9528..9635 -
1691683641.3525584-CDS-L-elsbetiae_contig5313:9527..96351691683641.3525584-CDS-L-elsbetiae_contig5313:9527..9635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5313 9528..9635 -
1622816551.2003772-CDS-L-elsbetiae_contig5313:10183..103871622816551.2003772-CDS-L-elsbetiae_contig5313:10183..10387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5313 10184..10387 -
1691683641.3632314-CDS-L-elsbetiae_contig5313:10183..103871691683641.3632314-CDS-L-elsbetiae_contig5313:10183..10387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5313 10184..10387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5313.13479.1prot_L-elsbetiae_contig5313.13479.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5313 9528..10387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5313.13479.1

>prot_L-elsbetiae_contig5313.13479.1 ID=prot_L-elsbetiae_contig5313.13479.1|Name=mRNA_L-elsbetiae_contig5313.13479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MGAGVLGIPGSVPAAPPAAPVPAPAAPAPAVPPVAGSPTFCLLVKNMFDP
ATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA
MVS*
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mRNA from alignment at L-elsbetiae_contig5313:9528..10387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5313.13479.1 ID=mRNA_L-elsbetiae_contig5313.13479.1|Name=mRNA_L-elsbetiae_contig5313.13479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=860bp|location=Sequence derived from alignment at L-elsbetiae_contig5313:9528..10387- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGCCGGAGTCCTCGGCATCCCTGGCTCCGTGCCTGCCGCCCCTCC CGCCGCGCCTGTGCCTGCGCCTGCCGCTCCGGCGCCGGCTGTGCCGCCCG TGGCGGGCAGCCCGACGTTCTGCCTTTTGGTGAAGAACATGTTCGATCCG GCCACTGAGACGGACGAGGGATGGGAGCTGGACATCAAGGAGGAGATGGA AGAGGTATAAAGTATGTAGGATCGTGATGAGCTGTGGGCTGTGGGCTGCG GCTGAGTTGTTGTTTTTCTCACGTCAGTTCTCTATGTAGTCCAAAAACGT CCATGGGGGCACGTGGTGACAAACACAGGGCACACTCGACGCCGCTGAAG GAAAATAGAACACAACTATGATACATACGCGCCAGGCGATACTTGGTTGT TGCACTCTTTTCAGATACGATTGCCGTCGTCATCGATCGAAAGCTTTCGG GGGAGAGGGTTTTTTTTTGCGGCTATGTAGTCTAGGCGCTCTTGATGCGC AGCTACGTGCTCGAGAAGCCTCCTGTGATGCTGTCGCTAGCACGGTCGTT GTGCCCTTTGTAGCCTTTCAAGATGCGTTGGTCTCGTCTCTTGTCTTGTC TTCCCTCGGGGCCTTGTTGGCATGTTCCGATGACGTCACAGAGGATGATA TGAACCCTGACTGACCGCTTGTCAATCGTGCCCTGGTTGCGCCGTTTGGC CTGTGATAAACCGCTTCGTGCCCGGGTTGTGGCGGATGATGATGTCTCAC AGGAGTGCTCCAAGCACGGAGCCGTGATGCACAGCTACGTCGAGTCAAGG CAGCCCGGGGGTCTGGTGTACGTCATGTTCAGCACCACCGGCGCCGCTAT GGTGAGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5313:9528..10387-

>mRNA_L-elsbetiae_contig5313.13479.1 ID=mRNA_L-elsbetiae_contig5313.13479.1|Name=mRNA_L-elsbetiae_contig5313.13479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5313:9528..10387- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGCCGGAGTCCTCGGCATCCCTGGCTCCGTGCCTGCCGCCCCTCC
CGCCGCGCCTGTGCCTGCGCCTGCCGCTCCGGCGCCGGCTGTGCCGCCCG
TGGCGGGCAGCCCGACGTTCTGCCTTTTGGTGAAGAACATGTTCGATCCG
GCCACTGAGACGGACGAGGGATGGGAGCTGGACATCAAGGAGGAGATGGA
AGAGATGGGGGCCGGAGTCCTCGGCATCCCTGGCTCCGTGCCTGCCGCCC
CTCCCGCCGCGCCTGTGCCTGCGCCTGCCGCTCCGGCGCCGGCTGTGCCG
CCCGTGGCGGGCAGCCCGACGTTCTGCCTTTTGGTGAAGAACATGTTCGA
TCCGGCCACTGAGACGGACGAGGGATGGGAGCTGGACATCAAGGAGGAGA
TGGAAGAGGAGTGCTCCAAGCACGGAGCCGTGATGCACAGCTACGTCGAG
TCAAGGCAGCCCGGGGGTCTGGTGTACGTCATGTTCAGCACCACCGGCGC
CGCTATGGTGAGTTGAGAGTGCTCCAAGCACGGAGCCGTGATGCACAGCT
ACGTCGAGTCAAGGCAGCCCGGGGGTCTGGTGTACGTCATGTTCAGCACC
ACCGGCGCCGCTATGGTGAGTTGA
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