mRNA_L-elsbetiae_contig5313.13479.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: D7FRI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI3_ECTSI) HSP 1 Score: 137 bits (345), Expect = 9.110e-36 Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1 Query: 100 VAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAMVS 309 V G+PTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA+ S Sbjct: 490 VVGTPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAVAS 559
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A6H5L1B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B8_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.880e-35 Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1 Query: 100 VAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAMVS 309 V G+PTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA+ S Sbjct: 859 VVGTPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAVAS 928
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7S2UUK7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUK7_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.530e-28 Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1 Query: 94 PPVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300 PP+ G+P+FC +VKNMFDPATET EGWELDIKE++EEECS+ G V+HSYVE+RQPGG VY++F+ AA Sbjct: 6 PPIGGTPSFCFVVKNMFDPATETAEGWELDIKEDVEEECSRFGTVLHSYVETRQPGGFVYLLFARVEAA 74
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7S3YAZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAZ4_HETAK) HSP 1 Score: 108 bits (271), Expect = 1.820e-28 Identity = 46/69 (66.67%), Postives = 63/69 (91.30%), Query Frame = 1 Query: 94 PPVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300 P AGSP+FC L++NMFDP+TET++GW+LD+KE++EEECSK+G V+HSYVE+++PGGLVY++FST AA Sbjct: 13 PXXAGSPSFCFLIRNMFDPSTETEDGWDLDVKEDVEEECSKYGPVLHSYVEAQRPGGLVYLLFSTVAAA 81
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7S2MMP2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MMP2_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.880e-26 Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1 Query: 97 PVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAM 303 PVAG PTFC L++NMFDPATET+EGW+ DIKE++E ECSK G ++HSYVE+RQPGGLVY++FST +AM Sbjct: 431 PVAGMPTFCFLIRNMFDPATETEEGWDSDIKEDVEGECSKFGTLLHSYVETRQPGGLVYLLFSTVDSAM 499
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A835ZMX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMX7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.280e-20 Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1 Query: 91 VPPVAGSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300 VPP+ G+ +FC+L+KNM++ A ET++GWELDIKE+ E ECSK+G V+HSYV++ PGG V++MF AA Sbjct: 345 VPPIGGTRSFCILIKNMYNAAEETEDGWELDIKEDTEAECSKYGPVLHSYVDAASPGGCVFIMFRHASAA 414
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A834D8H5_JUGRE (RRM domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A834D8H5_JUGRE) HSP 1 Score: 79.0 bits (193), Expect = 2.270e-16 Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 1 Query: 106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAMVS 309 G+P+ CLL+KNMFDPATET+ +++DIKE++EEECSK+G V H YV+ + G VY+ F T AAM + Sbjct: 61 GTPSECLLLKNMFDPATETEPDFDMDIKEDVEEECSKYGRVRHIYVD-KNSAGFVYLRFETVEAAMAA 127
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A394D8W7_LUPAN (Uncharacterized protein n=10 Tax=Lupinus TaxID=3869 RepID=A0A394D8W7_LUPAN) HSP 1 Score: 81.3 bits (199), Expect = 9.270e-16 Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 Query: 106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300 G+PT CLL+KNMFDP TET+ ++LDIKE++EEECSKHG V H YV+ R G VY+ F T AA Sbjct: 508 GNPTECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKHGRVKHIYVDKRS-AGFVYLRFETVEAA 571
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A2N9HRN1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HRN1_FAGSY) HSP 1 Score: 80.9 bits (198), Expect = 1.260e-15 Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1 Query: 106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAAM 303 G+PT CLL+KNMFDPATETD +++DIKE++EEECSK+G V H YV+ R G VY+ F T AM Sbjct: 494 GNPTECLLLKNMFDPATETDPEFDMDIKEDVEEECSKYGRVKHIYVD-RNSAGCVYLRFETVDGAM 558
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Match: A0A7J9IFK9_9ROSI (RRM domain-containing protein n=2 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9IFK9_9ROSI) HSP 1 Score: 79.3 bits (194), Expect = 2.060e-15 Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1 Query: 106 GSPTFCLLVKNMFDPATETDEGWELDIKEEMEEECSKHGAVMHSYVESRQPGGLVYVMFSTTGAA 300 G P+ CLL+KNMFDPATET+ ++LDIKE++EEECSK+G V H YV+ + GG VY+ F +T AA Sbjct: 222 GQPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHIYVD-KNSGGCVYLRFDSTEAA 285 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5313.13479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5313.13479.1 >prot_L-elsbetiae_contig5313.13479.1 ID=prot_L-elsbetiae_contig5313.13479.1|Name=mRNA_L-elsbetiae_contig5313.13479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp MGAGVLGIPGSVPAAPPAAPVPAPAAPAPAVPPVAGSPTFCLLVKNMFDPback to top mRNA from alignment at L-elsbetiae_contig5313:9528..10387- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5313.13479.1 ID=mRNA_L-elsbetiae_contig5313.13479.1|Name=mRNA_L-elsbetiae_contig5313.13479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=860bp|location=Sequence derived from alignment at L-elsbetiae_contig5313:9528..10387- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5313:9528..10387- >mRNA_L-elsbetiae_contig5313.13479.1 ID=mRNA_L-elsbetiae_contig5313.13479.1|Name=mRNA_L-elsbetiae_contig5313.13479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5313:9528..10387- (Laminarionema elsbetiae ELsaHSoW15)back to top |