mRNA_L-elsbetiae_contig531.13472.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig531.13472.1
Unique NamemRNA_L-elsbetiae_contig531.13472.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: D8LRU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU6_ECTSI)

HSP 1 Score: 677 bits (1746), Expect = 6.750e-233
Identity = 428/666 (64.26%), Postives = 477/666 (71.62%), Query Frame = 3 
Query:  216 MAPPLPKGRPIPVRKTVLEEEEYVDRLGEIIEGDYFPQNAKMTRALAGLAGNGPG---NNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADRPKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDGASKSSTAPAKRRLIKQSGETSKRVTRAAVATAQEKASAGADGFSPESRGAAAEGGEVTSPREEPTSPASQQTRREQAASVSTGSTE-------EAEKTAEMAAANDPSRSPVDLDSSGGDDDAWSSTTPQQPLGSDPPPAQGPLPPRVPRDTVVVKTNPKVIQAHATRFPIPKPRQPRRGPWASPIEKPSSSRESVAELLAGTGDTSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPGGDGSSSGGGMDVGGFIRTLGGISGG--GRQFEVKELPARDKLAHRLEAVDTRRKRAKLGVGAASDGRGTHTPAPSTPLTPQTPGTGQRXXXXXXXXXGTTGRRTPGGAXXXXXXXXXXXXXXXXAAPSTPAARTLAAKLAQRQSADTPFGGGLTPGRQKRRSSRSGRGGGAKGG 2177
            MAPPLPKGR +P++KTVLEEEEYVDRLGEIIEGDYFP NAKM RALAGLA +G     + TP+  +                 G G +L  SG     G + G   S  AG GGALTKFVATHTSEDN+AFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGK+MSVERREQMDAACADRPKIGD RPNQV+TWKHRTRNQLMFSP++ ASNDICRIEQ P  A  LL+KDG++ S+TA  KRR+IKQS E  KRV RA   + +E  SA  D  S +S GA                P+S +           G  E        A  + +    ++P   P  +DS+ G DD  SS +       +PP    P PP V R  VVVK NPKVIQAHATRFP+P PR+P RGPWASPIEKPSSSRESVAELLAGT D+SGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLP     +  G MDV  F+ TLGG+ GG   +QFE+K+LPARDKLAHRLEAVDTRRKRAKLG GAA+DGRGTHTPAP+TP+TPQTPGTG+RXXXXXXXXX   G RTP     XXXXXX         A  TPAAR+LAA+LAQRQS DTPFGGGLTPGRQ+RR+ RSG G GA  G
Sbjct:    1 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGGSTDGDGLELRVSG-----GNSDGPSSSNCAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGST-SATATTKRRVIKQSEEVVKRVARATATSTKE--SADGDCHSSKSSGATXXXXXXXXXXXXXXXPSSDEALTATPDQPHQGEPEYQSSGPPNAGGSTQRTEMDEPLHCPPRVDSNEGVDDFGSSES----RADEPPAPPRPAPP-VSRGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLP----EAGRGAMDVASFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXX--RGGRTPAKGKGXXXXXX---------AAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGANRG 638
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: W2Q457_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q457_PHYPN)

HSP 1 Score: 126 bits (317), Expect = 1.500e-27
Identity = 93/243 (38.27%), Postives = 125/243 (51.44%), Query Frame = 3 
Query:  255 RKTVLEEEEYVDRLGEIIEGDYFPQNAKM---TRALAGLAGNGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSG--------SEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAY-DTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDGASKS 944
            +K VLEEEEYV+ LG+IIE D+FP   K+   T+ L G     P  +T    A                      +  SG           A     G      A T   L +FVATHTSEDN++F ELQEK  +  +RRY WA+ D    G+       KL +L NG  +S E+R+  D ACA + PK  D+RP+  ETWK+R RN L+F P++ A+ DIC+++ DP   G  LL + +SKS
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKKQTKLLRGEEEGLPWTDTTLRVASTSRGNVSVWS----------NISDSGWDQPTPVVEHSADDQVQGEDSDDSAKTSMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFVDDKEKGD------PKLHLLTNGTWISKEQRQIADEACASKGPK--DYRPSAPETWKYRARNPLLFPPELEATRDICQVKADP---GDQLLLENSSKS 224
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: G4YIQ7_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIQ7_PHYSP)

HSP 1 Score: 124 bits (310), Expect = 9.490e-27
Identity = 89/238 (37.39%), Postives = 117/238 (49.16%), Query Frame = 3 
Query:  255 RKTVLEEEEYVDRLGEIIEGDYFPQNAKM---TRALAGLAGNGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDGASKSSTAP 956
            +K VLEEEEYVD LG+IIE D+FP   K+   T  L    G  P  +T   +A                  +      SG      T        +A     L  FVATHTSEDN++FAELQEK     +RRY WA+D     +       KL +L NG  +S E+R   D ACA + PK  D RP+  ETW+ R RN L+F P++ A+ DIC++     +   LLL++G    S  P
Sbjct:    3 KKVVLEEEEYVDALGQIIERDFFPDLPKLKRQTELLREEEGGVPWTDTTLRAANTRGNASVRSSASGTGWDQ--PTPQSGESAVDATQESDAAEADAKASMTLNHFVATHTSEDNESFAELQEKAVIDHQRRYHWAFD-----DDKKRGDPKLHLLTNGTWISKEQRRIADEACAPKGPK--DDRPSAPETWRFRARNPLLFPPELEATRDICQVR----SGNQLLLENGVKSRSGRP 227
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: A0A329SZM5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.300e-26
Identity = 94/241 (39.00%), Postives = 127/241 (52.70%), Query Frame = 3 
Query:  255 RKTVLEEEEYVDRLGEIIEGDYFPQNAKM---TRALAGLAGNGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKE-------AGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDGASKS 944
            +K VLEEEEYV+ LG+IIE D+FP   K+   T  L       P  +T  H+A                  R G  GS   +  P      +   +       A     L +FVATHTSEDN++F ELQEK  +  +RRY WA+D   D E  +    KL +L NG  +S E+R+  D ACA + PK  D RP+  ETWK+R RN L+F P++ A+ DIC+++ DP A    LL + +SKS
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDIPKLKKQTELLRDEEEGLPWTDTTLHAASTSRGNASV---------RSGASGSGWDQPTPIVEQPAIDQAQDEGADDNAKASMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDN--DKEKGDP---KLHLLTNGTWISKEQRQIADDACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVKADPGAQ---LLLENSSKS 224
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: A0A2P4YVG3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVG3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.160e-26
Identity = 92/246 (37.40%), Postives = 125/246 (50.81%), Query Frame = 3 
Query:  255 RKTVLEEEEYVDRLGEIIEGDYFPQNAKMTRA---LAGLAGNGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGG----------------ALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDG 932
            RK VLEEEEYV+ LG+IIE D+FP  +K+ +    L     N P  +T    A                 G   +  ++   G    T    P+ E  TG                  L +FV THTSEDN+AF ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F PD+  + +IC++E  P A   LLL++G
Sbjct:    3 RKVVLEEEEYVEALGQIIERDFFPDLSKLKKQSELLRDEEENLPWTDTTLRVA-------------SMTRGNTSERSNASDSGWDEPT----PTLEQSTGSPLQDEDHAEDKSRASMTLNRFVTTHTSEDNEAFNELQEKTVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRQIADKACAPKGPK--DDRPSAPQTWKYRARNPLLFPPDLETTREICQVESGPRAQ--LLLENG 220
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: A0A225X327_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X327_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.380e-26
Identity = 91/237 (38.40%), Postives = 126/237 (53.16%), Query Frame = 3 
Query:  255 RKTVLEEEEYVDRLGEIIEGDYFPQNAKMTRALAGLAGNG--PGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDGASKSSTAP 956
            +K VLEEEEYVD L +IIE D+FP   K+ R    L      P  NT   +A                 G G    +  +E   G+        ++     L +FVATHTSEDN++F ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R   D ACA + PK  D RP+  ETWK+R RN L+F P++ A+ DIC++E  P +   LLL++ +++ S  P
Sbjct:    3 KKVVLEEEEYVDALDQIIERDFFPDLPKLKRQAELLRDEEDLPWTNTTLRAA----TTQGNMSVRSDASGSGWDQPTPMAEQLTGSPVVEPAEDKSQASMTLNRFVATHTSEDNESFNELQEKAVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRLLADKACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVE--PGSKSQLLLENVSNQRSGRP 224
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: A0A6A3N5K9_9STRA (Pyr_redox_2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N5K9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.570e-25
Identity = 88/230 (38.26%), Postives = 115/230 (50.00%), Query Frame = 3 
Query:  255 RKTVLEEEEYVDRLGEIIEGDYFPQNAKM---TRALAGLAGNGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDG 932
            +K VLEEEEYV+ LG+IIE D+FP   K+   T  L    G  P  +T   +A                         S    A           EA     L  FVATHTSEDN++F ELQ+K  +  +RRY WAYD     +       +L +L NG  +S E+R   D ACA + PK  D RP+  ETWK R RN L+F P++ A+ DICR+E  P +   LLL++G
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKQQTELLREEEGGIPWTDTTLQAANARGNFSVRSSGSGTGWDH--PTPQSDQSVADANHDNAAAEAEAKASMTLNHFVATHTSEDNESFVELQQKAVKDHQRRYHWAYD-----DDKERGDPELHLLTNGTWISKEQRRIADQACAPKGPK--DDRPSAPETWKFRARNPLLFPPELEATRDICRVE--PGSGNQLLLENG 221
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: A0A662XZJ0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZJ0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.750e-25
Identity = 89/224 (39.73%), Postives = 116/224 (51.79%), Query Frame = 3 
Query:  258 KTVLEEEEYVDRLGEIIEGDYFPQNAKMTRALAGLAG-NGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRI---EQDPAAAGP 914
            K VLEEEEYV+ LGEIIE D+FP    + R  A  +G + P       ++G                    +  +  SEG    T              L +FVATHTSEDN+AF ELQEK  E  +RRY WA+D   DG+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  ETWK R RN L+F PD+  + DICR+   E   A+ GP
Sbjct:  444 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTAVPSGWDQPSPAREPTASGTNALVRSRTRNEDD------EKSAVESEGVQNMT--------------LNRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-DGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATARDICRLSVSESGDASPGP 640
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: A0A6A4FV49_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FV49_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.760e-25
Identity = 91/253 (35.97%), Postives = 118/253 (46.64%), Query Frame = 3 
Query:  255 RKTVLEEEEYVDRLGEIIEGDYFPQNAKMTR--------------ALAGLA------------GNGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDG 932
            +K VLEEEEYV+ LG+IIE D+FP   K+ +              AL  LA            G  P  +T   +A                         S    A           EA     L  FVATHTSEDN++F ELQ+K  +  +RRY WAYD     +       KL +L NG  +S E+R   D ACA + PK  D RP+  ETWK R RN L+F P++ A+ DICR+E  P +   LLL++G
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKQQTEVRSIIDSACINALKSLALIASFSCCERRRGGIPWTDTTLQAANARGNFSVRSSGSGTGWDH--PTPQSDQSVADANHDNAAAEAEAKASMTLNHFVATHTSEDNESFVELQQKAVKDHQRRYHWAYD-----DDKERGDPKLHLLTNGTWISKEQRRIADQACAPKGPK--DDRPSAPETWKFRARNPLLFPPELEATRDICRVE--PGSGNQLLLENG 244
[Close]
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Match: A0A662XTQ1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTQ1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.440e-24
Identity = 88/232 (37.93%), Postives = 118/232 (50.86%), Query Frame = 3 
Query:  258 KTVLEEEEYVDRLGEIIEGDYFPQNAKMTRALAGLAG---NGPGNNTPSHSAGXXXXXXXXXXXXXXXXGRGGQLGSSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR-PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLKDGASK 941
            K VLEEEEYV+ LGEIIE D+FP    + R  A L+      P     ++ A                     +  +  SEG    T              L++FVATHTSEDN+AF ELQEK  E  +RRY WA+D    G+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  ETWK R RN L+F PD+  + DICR E+      P+++ +G  K
Sbjct:    5 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTAVLSSWDQPSPAREPTANRANALVRNRTRSEDD--------EKSAVESEGVQNMT--------------LSRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-SGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATTRDICR-EKHFEWTSPMVMDEGVYK 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig531.13472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU6_ECTSI6.750e-23364.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W2Q457_PHYPN1.500e-2738.27Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
G4YIQ7_PHYSP9.490e-2737.39Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A329SZM5_9STRA2.300e-2639.00Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2P4YVG3_9STRA4.160e-2637.40Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A225X327_9STRA4.380e-2638.40Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3N5K9_9STRA1.570e-2538.26Pyr_redox_2 domain-containing protein n=4 Tax=Phyt... [more]
A0A662XZJ0_9STRA4.750e-2539.73Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6A4FV49_9STRA8.760e-2535.97Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A662XTQ1_9STRA1.440e-2437.93Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig531contigL-elsbetiae_contig531:11816..15024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score688.7
Seed ortholog evalue3e-195
Seed eggNOG ortholog2880.D8LRU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nuclear protein Es2
EggNOG OGs2E6IQ@1,2SD85@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionNuclear protein DGCR14
Ec32 orthologEc-08_002490.1
Exons3
Model size2555
Cds size2274
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig531.13472.1prot_L-elsbetiae_contig531.13472.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig531 11842..14769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.3748748-UTR-L-elsbetiae_contig531:11815..118411622816550.3748748-UTR-L-elsbetiae_contig531:11815..11841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig531 11816..11841 +
1691683640.7087135-UTR-L-elsbetiae_contig531:11815..118411691683640.7087135-UTR-L-elsbetiae_contig531:11815..11841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig531 11816..11841 +
1622816550.4227078-UTR-L-elsbetiae_contig531:14769..150241622816550.4227078-UTR-L-elsbetiae_contig531:14769..15024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig531 14770..15024 +
1691683640.7785316-UTR-L-elsbetiae_contig531:14769..150241691683640.7785316-UTR-L-elsbetiae_contig531:14769..15024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig531 14770..15024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.3852553-CDS-L-elsbetiae_contig531:11841..124261622816550.3852553-CDS-L-elsbetiae_contig531:11841..12426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig531 11842..12426 +
1691683640.7219634-CDS-L-elsbetiae_contig531:11841..124261691683640.7219634-CDS-L-elsbetiae_contig531:11841..12426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig531 11842..12426 +
1622816550.3952005-CDS-L-elsbetiae_contig531:12624..128191622816550.3952005-CDS-L-elsbetiae_contig531:12624..12819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig531 12625..12819 +
1691683640.7565758-CDS-L-elsbetiae_contig531:12624..128191691683640.7565758-CDS-L-elsbetiae_contig531:12624..12819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig531 12625..12819 +
1622816550.4120789-CDS-L-elsbetiae_contig531:13275..147691622816550.4120789-CDS-L-elsbetiae_contig531:13275..14769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig531 13276..14769 +
1691683640.7685604-CDS-L-elsbetiae_contig531:13275..147691691683640.7685604-CDS-L-elsbetiae_contig531:13275..14769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig531 13276..14769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig531.13472.1

>prot_L-elsbetiae_contig531.13472.1 ID=prot_L-elsbetiae_contig531.13472.1|Name=mRNA_L-elsbetiae_contig531.13472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=758bp
MMPGMSADGARLQTLTANGGRLEMPSPGTLQRLEDPRAWHARGEVGIQAA
RRPTAGTRTVALPMAPPLPKGRPIPVRKTVLEEEEYVDRLGEIIEGDYFP
QNAKMTRALAGLAGNGPGNNTPSHSAGTPSSVTGAPTPGGSTPGRGGQLG
SSGSEGAPGTTGGRVPSKEAGTGGALTKFVATHTSEDNQAFAELQEKDQE
AFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKLMSVERREQMDAACADR
PKIGDHRPNQVETWKHRTRNQLMFSPDIVASNDICRIEQDPAAAGPLLLK
DGASKSSTAPAKRRLIKQSGETSKRVTRAAVATAQEKASAGADGFSPESR
GAAAEGGEVTSPREEPTSPASQQTRREQAASVSTGSTEEAEKTAEMAAAN
DPSRSPVDLDSSGGDDDAWSSTTPQQPLGSDPPPAQGPLPPRVPRDTVVV
KTNPKVIQAHATRFPIPKPRQPRRGPWASPIEKPSSSRESVAELLAGTGD
TSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPGGDGSS
SGGGMDVGGFIRTLGGISGGGRQFEVKELPARDKLAHRLEAVDTRRKRAK
LGVGAASDGRGTHTPAPSTPLTPQTPGTGQRTPATGKRTPGTTGRRTPGG
AKTPGGGRASGKGRSGAAAPSTPAARTLAAKLAQRQSADTPFGGGLTPGR
QKRRSSRSGRGGGAKGGGLTPLPSTPARSATPVTANGKLGAAKEKPSSLT
DGLLALK*
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mRNA from alignment at L-elsbetiae_contig531:11816..15024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig531.13472.1 ID=mRNA_L-elsbetiae_contig531.13472.1|Name=mRNA_L-elsbetiae_contig531.13472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3209bp|location=Sequence derived from alignment at L-elsbetiae_contig531:11816..15024+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGACCGTTTCGGCTCCCGTGCTGATGATGCCCGGCATGTCCGCCGAC
GGGGCAAGGTTACAGACCTTAACTGCCAATGGAGGCAGGCTTGAAATGCC
TTCGCCGGGGACTCTCCAGCGCCTGGAAGACCCGAGGGCATGGCATGCCA
GGGGCGAGGTAGGAATACAAGCCGCACGGCGGCCGACCGCGGGCACCCGG
ACGGTAGCTCTTCCGATGGCGCCACCGCTGCCGAAGGGCCGGCCTATCCC
AGTCCGGAAGACGGTCCTCGAGGAGGAAGAGTACGTGGACCGTCTCGGAG
AAATCATCGAAGGCGACTACTTTCCGCAAAACGCCAAGATGACCCGAGCT
CTTGCGGGTCTTGCGGGCAACGGCCCCGGCAACAACACACCATCCCACTC
AGCCGGAACTCCTTCTTCTGTGACTGGGGCGCCGACTCCAGGCGGATCTA
CTCCTGGACGCGGTGGACAGCTTGGAAGTAGTGGGAGCGAGGGCGCTCCG
GGCACTACGGGAGGACGTGTACCATCAAAGGAAGCGGGGACTGGCGGCGC
CCTGACCAAGTTCGTTGCAACCCACACGTCGGAGGATAACCAGGCCTTTG
CTGAGCTGCAGGTAAGGGTCGATTTGCGCAACTCTCTTACCACCAAGGTC
CAGCCGATTACACCTCTTGGGCGTAGAATGTTGGTAGATCTCTGCAGCCG
CGTACAGTAGTGTTGGATCGCGTTCGTGGCGAGTCTCGGCTTTCACACTG
GTAGTTGCTGCCGCCTCTTTTTTTTTTCTCCGTCTGATGTCAACGTTCGT
GCTGTGCAGGAGAAAGATCAGGAGGCGTTTCGGAGGCGCTATTTTTGGGC
CTACGATACCACGCCAGACGGGGAGGGGAACAACGCCACTTCCACCAAGC
TGTTGATACTGCCTAACGGCAAGCTGATGTCCGTGGAGCGGCGGGAACAA
ATGGATGCCGCTTGCGCGGATCGCCCGAAGATAGGAGACCATCGGCCAAA
TCAGGTGCGGCATCGGAGAGTCGAAGGCAGCTCGGGATATTCGAGATGTG
TATTGTGCTTGATGGTATGCATCATTGACTACATACAAAGACGTTTTTTA
GGGTGGCACACATTTTCCGATCTCAAAGGGGCTCCCAATCTAGTCCCGCA
ACTCCCGCTCCGAGGCGATGCGGAAGGCACACCTCAGCATGTTTGCTCGT
GCTCCTTTAGCAGGCGTGGCTGTCGTTGTGGTTCTGCGCGCAGCGGCTTG
CTGTGCCAACGTCAGTGCTGCGTGTTGGCTACTCCATATCTGTCTGATGC
GCCAAAGCCAAAATTTGAAGCCACTGCTAGGACTTCTATTCTCCCTAGCT
CGCCGGAGTTACATACGAGTCATAAACCAATTCGCGCGATGGCAGAGGTG
CTCACGCCATTTTCTCTTCCTCTCTCGCACCCATGCCCCGATGGCCGCGT
TTTACTGCAGGTGGAGACGTGGAAACACAGGACTCGAAACCAGCTCATGT
TTTCCCCCGACATAGTCGCGTCAAACGACATTTGTAGAATCGAGCAAGAC
CCGGCGGCGGCTGGACCGCTTCTCTTGAAAGACGGTGCGTCGAAGTCGTC
GACAGCACCAGCAAAGCGAAGATTAATAAAGCAATCGGGCGAGACCTCAA
AGAGAGTGACGCGGGCAGCAGTAGCCACTGCCCAAGAAAAGGCTTCCGCT
GGTGCTGATGGATTTTCTCCGGAATCGCGTGGGGCAGCTGCAGAAGGCGG
TGAAGTTACCTCGCCTCGTGAGGAACCTACCAGCCCAGCCTCTCAACAAA
CGCGCCGGGAGCAGGCTGCTTCGGTTTCTACGGGATCGACGGAAGAAGCA
GAGAAAACAGCAGAAATGGCCGCCGCGAACGACCCTTCGCGATCCCCCGT
TGACCTAGACTCGAGTGGCGGGGATGATGATGCTTGGTCGTCAACAACAC
CGCAACAACCTCTAGGAAGCGATCCTCCGCCGGCCCAAGGACCACTGCCA
CCCCGAGTTCCGCGCGATACAGTAGTCGTGAAGACGAATCCAAAGGTGAT
TCAGGCCCACGCGACGAGATTCCCGATTCCCAAGCCGCGGCAACCAAGAC
GAGGCCCGTGGGCATCGCCGATCGAGAAGCCGTCGTCTTCGCGAGAGTCC
GTCGCGGAGCTGCTGGCGGGAACTGGGGATACTTCGGGCTACGAGGAGGT
GCCCATGACACCTTCAAGAGTGCCAGGCGTGGACGGAGACTCTCCGCAGA
TCACTTGGGGTTCCATCGACGGCACTCCGATGATTCTCGACCCGCGCGCT
ACCCCCCTCCCCGGCGGGGATGGTTCTTCAAGTGGTGGAGGGATGGATGT
GGGGGGTTTCATCCGGACGCTGGGAGGTATCAGCGGGGGTGGACGCCAGT
TCGAGGTCAAGGAACTCCCTGCCCGAGACAAGCTCGCGCACCGTCTGGAG
GCCGTCGACACGCGTCGGAAACGGGCCAAGCTTGGCGTCGGCGCGGCCTC
GGACGGAAGGGGGACGCACACGCCCGCGCCCTCTACTCCGTTAACCCCGC
AAACGCCCGGGACAGGACAACGGACCCCTGCTACTGGAAAACGAACGCCA
GGAACGACGGGTAGACGAACGCCCGGGGGCGCCAAAACGCCTGGTGGTGG
TAGGGCTTCTGGGAAGGGGAGATCTGGCGCGGCGGCGCCCTCGACTCCTG
CCGCTCGGACGTTGGCGGCGAAGTTGGCTCAGCGGCAAAGTGCCGACACT
CCGTTCGGCGGCGGGCTGACTCCTGGTCGGCAGAAAAGGCGAAGTAGTCG
CTCGGGTAGAGGGGGTGGTGCCAAGGGGGGTGGGCTTACTCCGCTCCCAA
GCACGCCTGCAAGATCGGCAACGCCTGTCACGGCAAACGGAAAGTTGGGG
GCGGCTAAAGAAAAACCGTCATCGCTCACAGACGGCTTGTTAGCGCTGAA
GTGAGGATTGCGATTGTGTTTCTAAGACAAATGTTGAAGTTGGTGGATTT
CTTGTGTGGTGTAGAATGTGTCGATAAGGAAGTTTCTTGATGTGCGAGAG
GCAATGGATGCAGAGGTTCTCTTACGAAGGATGAAAACATCGTCACAAGT
TGGTTGAAATGGTTTGGTGTGTTTTGCAAAGAGAAATACAACCTCCTCTT
GCAGTGCTGGCCTTGGTGCCAAATGTCACACCCTGCGGGTGTGTGTTCTT
CTGGAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig531:11816..15024+

>mRNA_L-elsbetiae_contig531.13472.1 ID=mRNA_L-elsbetiae_contig531.13472.1|Name=mRNA_L-elsbetiae_contig531.13472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4548bp|location=Sequence derived from alignment at L-elsbetiae_contig531:11816..15024+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCCCGGCATGTCCGCCGACGGGGCAAGGTTACAGACCTTAACTGC
CAATGGAGGCAGGCTTGAAATGCCTTCGCCGGGGACTCTCCAGCGCCTGG
AAGACCCGAGGGCATGGCATGCCAGGGGCGAGGTAGGAATACAAGCCGCA
CGGCGGCCGACCGCGGGCACCCGGACGGTAGCTCTTCCGATGGCGCCACC
GCTGCCGAAGGGCCGGCCTATCCCAGTCCGGAAGACGGTCCTCGAGGAGG
AAGAGTACGTGGACCGTCTCGGAGAAATCATCGAAGGCGACTACTTTCCG
CAAAACGCCAAGATGACCCGAGCTCTTGCGGGTCTTGCGGGCAACGGCCC
CGGCAACAACACACCATCCCACTCAGCCGGAACTCCTTCTTCTGTGACTG
GGGCGCCGACTCCAGGCGGATCTACTCCTGGACGCGGTGGACAGCTTGGA
AGTAGTGGGAGCGAGGGCGCTCCGGGCACTACGGGAGGACGTGTACCATC
AAAGGAAGCGGGGACTGGCGGCGCCCTGACCAAGTTCGTTGCAACCCACA
CGTCGGAGGATAACCAGGCCTTTGCTGAGCTGCAGATGATGCCCGGCATG
TCCGCCGACGGGGCAAGGTTACAGACCTTAACTGCCAATGGAGGCAGGCT
TGAAATGCCTTCGCCGGGGACTCTCCAGCGCCTGGAAGACCCGAGGGCAT
GGCATGCCAGGGGCGAGGTAGGAATACAAGCCGCACGGCGGCCGACCGCG
GGCACCCGGACGGTAGCTCTTCCGATGGCGCCACCGCTGCCGAAGGGCCG
GCCTATCCCAGTCCGGAAGACGGTCCTCGAGGAGGAAGAGTACGTGGACC
GTCTCGGAGAAATCATCGAAGGCGACTACTTTCCGCAAAACGCCAAGATG
ACCCGAGCTCTTGCGGGTCTTGCGGGCAACGGCCCCGGCAACAACACACC
ATCCCACTCAGCCGGAACTCCTTCTTCTGTGACTGGGGCGCCGACTCCAG
GCGGATCTACTCCTGGACGCGGTGGACAGCTTGGAAGTAGTGGGAGCGAG
GGCGCTCCGGGCACTACGGGAGGACGTGTACCATCAAAGGAAGCGGGGAC
TGGCGGCGCCCTGACCAAGTTCGTTGCAACCCACACGTCGGAGGATAACC
AGGCCTTTGCTGAGCTGCAGGAGAAAGATCAGGAGGCGTTTCGGAGGCGC
TATTTTTGGGCCTACGATACCACGCCAGACGGGGAGGGGAACAACGCCAC
TTCCACCAAGCTGTTGATACTGCCTAACGGCAAGCTGATGTCCGTGGAGC
GGCGGGAACAAATGGATGCCGCTTGCGCGGATCGCCCGAAGATAGGAGAC
CATCGGCCAAATCAGGAGAAAGATCAGGAGGCGTTTCGGAGGCGCTATTT
TTGGGCCTACGATACCACGCCAGACGGGGAGGGGAACAACGCCACTTCCA
CCAAGCTGTTGATACTGCCTAACGGCAAGCTGATGTCCGTGGAGCGGCGG
GAACAAATGGATGCCGCTTGCGCGGATCGCCCGAAGATAGGAGACCATCG
GCCAAATCAGGTGGAGACGTGGAAACACAGGACTCGAAACCAGCTCATGT
TTTCCCCCGACATAGTCGCGTCAAACGACATTTGTAGAATCGAGCAAGAC
CCGGCGGCGGCTGGACCGCTTCTCTTGAAAGACGGTGCGTCGAAGTCGTC
GACAGCACCAGCAAAGCGAAGATTAATAAAGCAATCGGGCGAGACCTCAA
AGAGAGTGACGCGGGCAGCAGTAGCCACTGCCCAAGAAAAGGCTTCCGCT
GGTGCTGATGGATTTTCTCCGGAATCGCGTGGGGCAGCTGCAGAAGGCGG
TGAAGTTACCTCGCCTCGTGAGGAACCTACCAGCCCAGCCTCTCAACAAA
CGCGCCGGGAGCAGGCTGCTTCGGTTTCTACGGGATCGACGGAAGAAGCA
GAGAAAACAGCAGAAATGGCCGCCGCGAACGACCCTTCGCGATCCCCCGT
TGACCTAGACTCGAGTGGCGGGGATGATGATGCTTGGTCGTCAACAACAC
CGCAACAACCTCTAGGAAGCGATCCTCCGCCGGCCCAAGGACCACTGCCA
CCCCGAGTTCCGCGCGATACAGTAGTCGTGAAGACGAATCCAAAGGTGAT
TCAGGCCCACGCGACGAGATTCCCGATTCCCAAGCCGCGGCAACCAAGAC
GAGGCCCGTGGGCATCGCCGATCGAGAAGCCGTCGTCTTCGCGAGAGTCC
GTCGCGGAGCTGCTGGCGGGAACTGGGGATACTTCGGGCTACGAGGAGGT
GCCCATGACACCTTCAAGAGTGCCAGGCGTGGACGGAGACTCTCCGCAGA
TCACTTGGGGTTCCATCGACGGCACTCCGATGATTCTCGACCCGCGCGCT
ACCCCCCTCCCCGGCGGGGATGGTTCTTCAAGTGGTGGAGGGATGGATGT
GGGGGGTTTCATCCGGACGCTGGGAGGTATCAGCGGGGGTGGACGCCAGT
TCGAGGTCAAGGAACTCCCTGCCCGAGACAAGCTCGCGCACCGTCTGGAG
GCCGTCGACACGCGTCGGAAACGGGCCAAGCTTGGCGTCGGCGCGGCCTC
GGACGGAAGGGGGACGCACACGCCCGCGCCCTCTACTCCGTTAACCCCGC
AAACGCCCGGGACAGGACAACGGACCCCTGCTACTGGAAAACGAACGCCA
GGAACGACGGGTAGACGAACGCCCGGGGGCGCCAAAACGCCTGGTGGTGG
TAGGGCTTCTGGGAAGGGGAGATCTGGCGCGGCGGCGCCCTCGACTCCTG
CCGCTCGGACGTTGGCGGCGAAGTTGGCTCAGCGGCAAAGTGCCGACACT
CCGTTCGGCGGCGGGCTGACTCCTGGTCGGCAGAAAAGGCGAAGTAGTCG
CTCGGGTAGAGGGGGTGGTGCCAAGGGGGGTGGGCTTACTCCGCTCCCAA
GCACGCCTGCAAGATCGGCAACGCCTGTCACGGCAAACGGAAAGTTGGGG
GCGGCTAAAGAAAAACCGTCATCGCTCACAGACGGCTTGTTAGCGCTGAA
GTGAGTGGAGACGTGGAAACACAGGACTCGAAACCAGCTCATGTTTTCCC
CCGACATAGTCGCGTCAAACGACATTTGTAGAATCGAGCAAGACCCGGCG
GCGGCTGGACCGCTTCTCTTGAAAGACGGTGCGTCGAAGTCGTCGACAGC
ACCAGCAAAGCGAAGATTAATAAAGCAATCGGGCGAGACCTCAAAGAGAG
TGACGCGGGCAGCAGTAGCCACTGCCCAAGAAAAGGCTTCCGCTGGTGCT
GATGGATTTTCTCCGGAATCGCGTGGGGCAGCTGCAGAAGGCGGTGAAGT
TACCTCGCCTCGTGAGGAACCTACCAGCCCAGCCTCTCAACAAACGCGCC
GGGAGCAGGCTGCTTCGGTTTCTACGGGATCGACGGAAGAAGCAGAGAAA
ACAGCAGAAATGGCCGCCGCGAACGACCCTTCGCGATCCCCCGTTGACCT
AGACTCGAGTGGCGGGGATGATGATGCTTGGTCGTCAACAACACCGCAAC
AACCTCTAGGAAGCGATCCTCCGCCGGCCCAAGGACCACTGCCACCCCGA
GTTCCGCGCGATACAGTAGTCGTGAAGACGAATCCAAAGGTGATTCAGGC
CCACGCGACGAGATTCCCGATTCCCAAGCCGCGGCAACCAAGACGAGGCC
CGTGGGCATCGCCGATCGAGAAGCCGTCGTCTTCGCGAGAGTCCGTCGCG
GAGCTGCTGGCGGGAACTGGGGATACTTCGGGCTACGAGGAGGTGCCCAT
GACACCTTCAAGAGTGCCAGGCGTGGACGGAGACTCTCCGCAGATCACTT
GGGGTTCCATCGACGGCACTCCGATGATTCTCGACCCGCGCGCTACCCCC
CTCCCCGGCGGGGATGGTTCTTCAAGTGGTGGAGGGATGGATGTGGGGGG
TTTCATCCGGACGCTGGGAGGTATCAGCGGGGGTGGACGCCAGTTCGAGG
TCAAGGAACTCCCTGCCCGAGACAAGCTCGCGCACCGTCTGGAGGCCGTC
GACACGCGTCGGAAACGGGCCAAGCTTGGCGTCGGCGCGGCCTCGGACGG
AAGGGGGACGCACACGCCCGCGCCCTCTACTCCGTTAACCCCGCAAACGC
CCGGGACAGGACAACGGACCCCTGCTACTGGAAAACGAACGCCAGGAACG
ACGGGTAGACGAACGCCCGGGGGCGCCAAAACGCCTGGTGGTGGTAGGGC
TTCTGGGAAGGGGAGATCTGGCGCGGCGGCGCCCTCGACTCCTGCCGCTC
GGACGTTGGCGGCGAAGTTGGCTCAGCGGCAAAGTGCCGACACTCCGTTC
GGCGGCGGGCTGACTCCTGGTCGGCAGAAAAGGCGAAGTAGTCGCTCGGG
TAGAGGGGGTGGTGCCAAGGGGGGTGGGCTTACTCCGCTCCCAAGCACGC
CTGCAAGATCGGCAACGCCTGTCACGGCAAACGGAAAGTTGGGGGCGGCT
AAAGAAAAACCGTCATCGCTCACAGACGGCTTGTTAGCGCTGAAGTGA
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