mRNA_L-elsbetiae_contig5306.13464.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5306.13464.1
Unique NamemRNA_L-elsbetiae_contig5306.13464.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5306.13464.1 vs. uniprot
Match: A0A812HR73_9DINO (Palmitoyltransferase (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812HR73_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 8.030e-11
Identity = 55/178 (30.90%), Postives = 80/178 (44.94%), Query Frame = 1 
Query:    7 CECEDLDEAFTGLVAPSASTAPTAASAAAPTAAWKRVLAVAQDRARVPWPGGARRLDLAWMLAAALLWLMRLAARRSTSLLKAVAVMATCLGGLGYSHLRALRQRSDSQFHVAWTTLSVLALYSRYREGVALTLSRTDDLMAHIILLALVSCYGHCCLV------DPGRDRGQIMADE 522
            CEC D D+     +  S    P   SA  P    +RV   A DR R+PW GGARRL+   + A  +L L+R   R ST     +  +A     L + H+  L     S + V+W   S+  LYS Y   V    S +  L+ H +LL +V+ +            D   ++GQ+ +DE
Sbjct:    6 CECTDFDKLVDDYL-NSLCRGPK--SAVPPRERLRRVFFTASDRCRIPWFGGARRLNAGALAAPVMLLLLRTVLRLSTYAPWLLFWLAVGASHLAWFHMACLSLPLRSDYFVSWVACSIAGLYSEYWSEVLPRQSSSSMLLCHGLLLVVVTSFASAVYTSAPVQEDQDAEKGQVQSDE 180
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BLAST of mRNA_L-elsbetiae_contig5306.13464.1 vs. uniprot
Match: A0A1Q9DAW9_SYMMI (Palmitoyltransferase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DAW9_SYMMI)

HSP 1 Score: 64.7 bits (156), Expect = 7.390e-9
Identity = 53/180 (29.44%), Postives = 79/180 (43.89%), Query Frame = 1 
Query:    7 CECED----LDEAFTGLVAPSASTAPTAASAAAPTAAWKRVLAVAQDRARVPWPGGARRLDLAWMLAAALLWLMRLAARRSTSLLKAVAVMATCLGGLGYSHLRALRQRSDSQFHVAWTTLSVLALYSRYREGVALTLSRTDDLMAHIILLALVSCYGHCCL----VDPGRDRGQIMADE 522
            CEC D    +D+    L     S+ P       P    +RV   A DR R+PW GGARRL+   + A  +L L+R   R ST     +  +A     L + H+  L     S + V+W   S+  LYS Y   V    S +  L+ H +LL +V  +         V    ++GQ+ ++E
Sbjct:   29 CECTDFDKLVDDYLNSLCRGPKSSVP-------PRERLRRVFFTASDRCRIPWFGGARRLNAGALAAPVMLLLLRTVLRLSTYAPWLLFWLAVGASHLAWFHVACLSLPLRSDYFVSWVACSIAGLYSEYWSEVLPRQSWSSVLLCHGLLLVVVISFASAVYTSAPVQEDAEQGQLQSEE 201
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BLAST of mRNA_L-elsbetiae_contig5306.13464.1 vs. uniprot
Match: D7G215_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G215_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-7
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 FFCECEDLDEAFTGLVAPSASTAPTAASAAAPTAAWKRVLAVAQDRARVPWPG 159
            FFCECEDLDE FT LV  SAS+A ++ +A+ P   WKRVL VAQDRARV + G
Sbjct:   20 FFCECEDLDETFTNLV--SASSAMSSTTASPP--GWKRVLDVAQDRARVGYGG 68
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BLAST of mRNA_L-elsbetiae_contig5306.13464.1 vs. uniprot
Match: A0A6H5LMG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMG4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.250e-6
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    4 FCECEDLDEAFTGLVAPSASTAPTAASAAAPTAAWKRVLAVAQDRAR 144
            FCECEDLDE FT LV+ S++T+ T AS       WKRVL VAQDRAR
Sbjct:   21 FCECEDLDETFTNLVSASSATSSTTASPPG----WKRVLDVAQDRAR 63
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BLAST of mRNA_L-elsbetiae_contig5306.13464.1 vs. uniprot
Match: A0A023FC80_AMBCJ (Palmitoyltransferase (Fragment) n=2 Tax=Amblyomma TaxID=6942 RepID=A0A023FC80_AMBCJ)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-5
Identity = 48/164 (29.27%), Postives = 72/164 (43.90%), Query Frame = 1 
Query:    7 CECEDLDEAFTGLVAPSASTAPTAASAAAPTAAWKRVLAVAQDRARVPWPGGARRLDLAWMLAAALLWLMRLAARRSTSLLKAVAVMATCLGGLGYSHLRALRQRSDSQFHVAWTTLSVLALYSRYREGVA----LTLSRTDDLMAHIILLALVSCYGHCCLVD 486
            C+CE LD AF  L       AP           W R+ A A DR RVPW GGA+R++L  +    LL  + L A  S ++L  +   +     L + H R    R+ ++F ++WT  S++ L   ++  V     +  S    LM  +    L +   H C  D
Sbjct:   34 CDCEALDTAFDRLFTCRRVPAPY----------WSRIKATAMDRIRVPWLGGAKRVELDLVSPIILLPTVLLLACHSWTML--MITFSVLPFALYFIHRRCSSSRTRTKFFLSWTVTSLVVLLGVFQLEVVPYLEILFSENTVLMLAVAFTCLCAYQVHSCPPD 185
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BLAST of mRNA_L-elsbetiae_contig5306.13464.1 vs. uniprot
Match: A0A6P7UE17_IXOSC (Palmitoyltransferase n=3 Tax=Ixodes TaxID=6944 RepID=A0A6P7UE17_IXOSC)

HSP 1 Score: 53.5 bits (127), Expect = 4.770e-5
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 1 
Query:    7 CECEDLDEAFTGLVAPSASTAPTAASAAAPTAAWKRVLAVAQDRARVPWPGGARRLDLAWMLAAALL-WLMRLAARRSTSLLKAVAVMATCLGGLGYSHLRALRQRSDSQFHVAWTTLSVLAL 372
            C+CE +DE F  +V               P   W R+ +   DR RVPW GGARR++   + A  LL  ++ LA    T LL   +++  CL  +   H RA + ++ ++F ++WT  S++ L
Sbjct:   34 CDCEAIDEVFERIVTRRP----------VPPVYWSRISSTVMDRIRVPWFGGARRVEPDVLSAVVLLPTVLLLACHSWTVLLVTFSLLPVCLILI---HRRASKNKTRTRFFLSWTVTSLVLL 143
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5306.13464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A812HR73_9DINO8.030e-1130.90Palmitoyltransferase (Fragment) n=2 Tax=Symbiodini... [more]
A0A1Q9DAW9_SYMMI7.390e-929.44Palmitoyltransferase n=4 Tax=Symbiodinium TaxID=29... [more]
D7G215_ECTSI1.810e-764.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LMG4_9PHAE2.250e-663.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A023FC80_AMBCJ1.390e-529.27Palmitoyltransferase (Fragment) n=2 Tax=Amblyomma ... [more]
A0A6P7UE17_IXOSC4.770e-531.71Palmitoyltransferase n=3 Tax=Ixodes TaxID=6944 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5306contigL-elsbetiae_contig5306:5703..8711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size584
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5306.13464.1prot_L-elsbetiae_contig5306.13464.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5306 5703..8711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816549.6582348-CDS-L-elsbetiae_contig5306:5702..58451622816549.6582348-CDS-L-elsbetiae_contig5306:5702..5845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 5703..5845 +
1691683640.1765883-CDS-L-elsbetiae_contig5306:5702..58451691683640.1765883-CDS-L-elsbetiae_contig5306:5702..5845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 5703..5845 +
1622816549.6778927-CDS-L-elsbetiae_contig5306:6297..63671622816549.6778927-CDS-L-elsbetiae_contig5306:6297..6367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 6298..6367 +
1691683640.1856198-CDS-L-elsbetiae_contig5306:6297..63671691683640.1856198-CDS-L-elsbetiae_contig5306:6297..6367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 6298..6367 +
1622816549.693581-CDS-L-elsbetiae_contig5306:6758..68871622816549.693581-CDS-L-elsbetiae_contig5306:6758..6887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 6759..6887 +
1691683640.194549-CDS-L-elsbetiae_contig5306:6758..68871691683640.194549-CDS-L-elsbetiae_contig5306:6758..6887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 6759..6887 +
1622816549.7086666-CDS-L-elsbetiae_contig5306:7937..80481622816549.7086666-CDS-L-elsbetiae_contig5306:7937..8048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 7938..8048 +
1691683640.204207-CDS-L-elsbetiae_contig5306:7937..80481691683640.204207-CDS-L-elsbetiae_contig5306:7937..8048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 7938..8048 +
1622816549.7205892-CDS-L-elsbetiae_contig5306:8582..87111622816549.7205892-CDS-L-elsbetiae_contig5306:8582..8711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 8583..8711 +
1691683640.2158048-CDS-L-elsbetiae_contig5306:8582..87111691683640.2158048-CDS-L-elsbetiae_contig5306:8582..8711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5306 8583..8711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5306.13464.1

>prot_L-elsbetiae_contig5306.13464.1 ID=prot_L-elsbetiae_contig5306.13464.1|Name=mRNA_L-elsbetiae_contig5306.13464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
FFCECEDLDEAFTGLVAPSASTAPTAASAAAPTAAWKRVLAVAQDRARVP
WPGGARRLDLAWMLAAALLWLMRLAARRSTSLLKAVAVMATCLGGLGYSH
LRALRQRSDSQFHVAWTTLSVLALYSRYREGVALTLSRTDDLMAHIILLA
LVSCYGHCCLVDPGRDRGQIMADEIGPGAPPTGNQEDEGILGTG
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mRNA from alignment at L-elsbetiae_contig5306:5703..8711+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5306.13464.1 ID=mRNA_L-elsbetiae_contig5306.13464.1|Name=mRNA_L-elsbetiae_contig5306.13464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3009bp|location=Sequence derived from alignment at L-elsbetiae_contig5306:5703..8711+ (Laminarionema elsbetiae ELsaHSoW15)
TTCTTCTGCGAGTGCGAAGACCTGGACGAAGCCTTCACCGGTCTCGTGGC
CCCGTCTGCATCAACCGCGCCGACGGCAGCATCGGCAGCTGCGCCTACGG
CGGCCTGGAAGCGCGTGCTCGCCGTGGCTCAGGATCGTGCGCGGTAAGAC
CGAGAGCGGTGGTGCAAACATTTGCAAGGGGGCAAGCGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGAGC
AGCGTGTTTTTCTTCTCTTGTTTTTTTTAGGCCGTGGGCGGATGATGCGT
AACTCTCTGTGTTCCGTGAGCTGTTTTTTTCATGCTGCCCCAACCAGAGC
CGTACGGTAGGGGGGTGCCGTAAGCCAGGGGGGCCGCACGAAGATCATCG
AAGCAGCGCACACCTCCGTAACGCTGCTGACCTTGGTGCTGCTGTTGTTG
GTTGGGGCGATGCGGTTGTTGTTGGTGGAGTTTGCCTCTGCTGCTGCTGC
TGGCTTCCGCTGACGCCGCTCCTGCCGACGTTGTTGCCGCTGTTGTTGTT
TGTTTGCTGTTATTGTTGTTGTCGGTGTGGCGTTCCCGGAGCCAGGGTGC
CGTGGCCAGGCGGCGCGAGGCGCCTGGACCTAGCCTGGATGCTTGCGGCG
GCTCTCCTGTGGCTTGTGCGTGTTCGCCTAAACATATATACGAGAACTAC
GTTGTAGTTTCCGTCGACGCGTGCCTTTCTGCTCACTAACGCATACCATG
TAACAGCAGTACTGGCCGTGTGTGGATAGCGCTGCCTGAGCCGTTGACTT
CACTAATCCAAGTTCACGCCAATCGCCAGCTTCGTGTAACCCCTTCCCTC
CTTCTTTCTCTACCCCTCCCTCCCCCCCCCCCCCCCCCCCGTCCCGGCTC
CCCCCCCCCCCTGTGCGCCGCGGGTGTCGGGCCCGCGGGGGCCNNNNNNN
NNNCCCCCCAGCCGCCACCTCTAGCGACCCCCTCCCTCCCTCCCCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCATTGATTGCGGGGACCTGCCATGCCGA
TGGCAGATGCGGTTAGCGGCCCGAAGGTCGACCTCCCTCCTTAAGGCCGT
GGCCGTGATGGCGACGTGCCTCGGAGGGCTTGGCTACTCGCACCTGAGAG
CGCTCCGCCAGCGTTCCGATTCCCAGTTCCACGTGGTGAGGGCGTTAGTC
ACATTGACCGATGCTGCTTGTGTGTAACCTGATGCTTGGGTTGACCCTCC
GCCAGGCGCGTCTACAACAGTATGTGCATGCATACATACGTAGCCTCCAA
ACAGGCGACAGCATTAAAAGTGGGGTCCAAAAGGCCGGTTTTAAAGCCCA
ACAGTTGGGCGGGGGGTTCTCTGTGTCAATATATCTTGTATTTTCCGCCC
TCTTTTCTCTTTTCGCTGCTGCTGCAGCTCCTGGGAGCGCGCGCAGCGTG
CCGGGAGTCCCTCCTCTCACGATCCCCGCATTCCGTCAGGACGAGGGGCC
TTTTTTTTTTGCCAGATCTGTAAATAAAATGTACTTGTGGACATACATAG
CAGTTAGCTACTAGCAGCAGTGGGTGCTCATGGGCCGATTGGGTTGGTTT
ACGTCGCCGGGGAGGGAAAGGCGGAAAAGTTGGCGGTGTGTGGGTATTAG
GTTATATCCGAGATTGGGGTTTTCCTCAGCCAATTTTCGCCCTACATAAG
TCTGCGAAGGGCACGCGCATCACCGTAAAGGTGCACTATTTATTTACCTA
GTCCAGAGGGAGAGCGGGGAGCGGGCCAGCCATGTGGTATTTTAGCGGGT
GGAATGTCGACGAAGGCATTTTTACGTTTTTTTGTTTTTTTTTGTGAACG
AAAGGCATGACTCGAACGTGGAAGTAACATGGCTTCTCGGCTCTCGGCTC
TCGACCTGCACGTGTGGTTTTGTGTTGTTGTGTTCGAAGCACGACCAGCA
ATCGAAAATCAATGAAAATCTTTGTTAAAACGCGCTCGTTCTGGGTGCGG
GCCCGAAAAACAACCAATAATTTCTAGACCGCTCTCACCAGCAGTGTGGT
GCCGTCTGCTTTATGTTTGCGCGTGCTGTTTACGGGGCGCGTGTCGTGCT
GCACCGACACTGGGCCCCTTCCTTCTCTCCCTTCTTCCCTCTTTTCCTTG
CTTGGTTCCATCATTCCGCTGACTAAATATCCCTGACCCCAAAAATGAAA
ATAATGCAGAGACACAAATACACCCAAAAACGCAGGCTTGGACCACGCTG
TCGGTGCTGGCGCTCTACTCGCGGTACCGCGAGGGTGTGGCCCTCACGCT
ATCGAGGACAGACGACTTGATGGCCCACATCATCTTGCTGGCTCTGGTGA
GAGAGAGGGAGAGAGAGAGAGAGAGAGGGAGAGAGAAGAGAAGAGAAGGA
GGGAGGAGATTTAGAAAGATGCACGTGCGGAGAGAGCGGAGTATGATGAC
GGTGAGCTGGCACGAAGGTTTAAGATGTAAATCTATAAGAAGCCGGAGGC
GATCACGAAACTATTGGGTGGGATTTGTCCCCGTGTATGCAGTAAACAAA
AAAACAAAGAGGACACATCTCTGTATTTATTTCCCAAACTTATACCCGGA
TCCTCGCGTCCGGGTATGGTAAATACGCGCGTGTGTAGTATCGTAGCCTT
TGGAAAAAAAAATAAAAAATGGTGCACAGCAGGAAGCAGCATTACAGTAG
TAGTAGTGGGCTACAGCAGAACAAAGAACCGGGCCACATACGTACAAGTT
AAGCTGCGCGAAAACGTATGTGGTACACACATACTTGTACACGCTTAGAT
CGCGCGCTTTCTCCCCCCCTCATCCTGCATCGTACGCACCGGATTGTTCA
TGTTGCACGTGTGTACTACAACATATTTAGGTGTCTTGCTATGGCCATTG
CTGTCTCGTCGACCCTGGGCGCGACCGGGGCCAGATAATGGCGGATGAAA
TCGGCCCGGGGGCACCGCCGACTGGGAACCAGGAAGACGAGGGTATACTG
GGGACAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5306:5703..8711+

>mRNA_L-elsbetiae_contig5306.13464.1 ID=mRNA_L-elsbetiae_contig5306.13464.1|Name=mRNA_L-elsbetiae_contig5306.13464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig5306:5703..8711+ (Laminarionema elsbetiae ELsaHSoW15)
TTCTTCTGCGAGTGCGAAGACCTGGACGAAGCCTTCACCGGTCTCGTGGC
CCCGTCTGCATCAACCGCGCCGACGGCAGCATCGGCAGCTGCGCCTACGG
CGGCCTGGAAGCGCGTGCTCGCCGTGGCTCAGGATCGTGCGCGTTCTTCT
GCGAGTGCGAAGACCTGGACGAAGCCTTCACCGGTCTCGTGGCCCCGTCT
GCATCAACCGCGCCGACGGCAGCATCGGCAGCTGCGCCTACGGCGGCCTG
GAAGCGCGTGCTCGCCGTGGCTCAGGATCGTGCGCGGGTGCCGTGGCCAG
GCGGCGCGAGGCGCCTGGACCTAGCCTGGATGCTTGCGGCGGCTCTCCTG
TGGCTTGGTGCCGTGGCCAGGCGGCGCGAGGCGCCTGGACCTAGCCTGGA
TGCTTGCGGCGGCTCTCCTGTGGCTTATGCGGTTAGCGGCCCGAAGGTCG
ACCTCCCTCCTTAAGGCCGTGGCCGTGATGGCGACGTGCCTCGGAGGGCT
TGGCTACTCGCACCTGAGAGCGCTCCGCCAGCGTTCCGATTCCCAGTTCC
ACGTGATGCGGTTAGCGGCCCGAAGGTCGACCTCCCTCCTTAAGGCCGTG
GCCGTGATGGCGACGTGCCTCGGAGGGCTTGGCTACTCGCACCTGAGAGC
GCTCCGCCAGCGTTCCGATTCCCAGTTCCACGTGGCTTGGACCACGCTGT
CGGTGCTGGCGCTCTACTCGCGGTACCGCGAGGGTGTGGCCCTCACGCTA
TCGAGGACAGACGACTTGATGGCCCACATCATCTTGCTGGCTCTGGCTTG
GACCACGCTGTCGGTGCTGGCGCTCTACTCGCGGTACCGCGAGGGTGTGG
CCCTCACGCTATCGAGGACAGACGACTTGATGGCCCACATCATCTTGCTG
GCTCTGGTGTCTTGCTATGGCCATTGCTGTCTCGTCGACCCTGGGCGCGA
CCGGGGCCAGATAATGGCGGATGAAATCGGCCCGGGGGCACCGCCGACTG
GGAACCAGGAAGACGAGGGTATACTGGGGACAGGAGTGTCTTGCTATGGC
CATTGCTGTCTCGTCGACCCTGGGCGCGACCGGGGCCAGATAATGGCGGA
TGAAATCGGCCCGGGGGCACCGCCGACTGGGAACCAGGAAGACGAGGGTA
TACTGGGGACAGGA
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